RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
         (141 letters)



>2oar_A Large-conductance mechanosensitive channel; stretch
           activated ION channel mechanosensitive, membrane
           protein; 3.50A {Mycobacterium tuberculosis H37RA}
           (A:1-126)
          Length = 126

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           +   FK+F+ARGN++DL+V ++IG AF  +V    + I+ PL+  +  N           
Sbjct: 24  MLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQS-------- 75

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTE 119
                  ++      G         S  +NFF++A  V F+++   N L K+ E
Sbjct: 76  ----DVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGE 125


>3hzq_A Large-conductance mechanosensitive channel; intermediate
           state mechanosensitive channel osmoregulation, cell
           membrane, ION transport; 3.82A {Staphylococcus aureus
           subsp} (A:33-114)
          Length = 82

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 18/99 (18%)

Query: 19  NVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEA 78
           NV+DL++ +++G AFN+++ S+VE+I+MPL+G + G+      +                
Sbjct: 1   NVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEWS--------------- 45

Query: 79  RKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQ 117
                   YG F   +++F I+A  +F+ ++  N L+K+
Sbjct: 46  ---FWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKK 81


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.141    0.395 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 987,967
Number of extensions: 38723
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 4
Length of query: 141
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 61
Effective length of database: 2,251,649
Effective search space: 137350589
Effective search space used: 137350589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)