RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
(141 letters)
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 127 bits (321), Expect = 9e-31
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 8 FNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67
FK+F+ARGN++DL+V ++IG AF +V + I+ PL+ + N
Sbjct: 25 LKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQS--------- 75
Query: 68 SEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTENVKNPPA 126
++ G S +NFF++A V F+++ N L K+ E +
Sbjct: 76 ---DVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDT 132
Query: 127 EVQLLTEIRDLLQK 140
+V LLTEIRDLL +
Sbjct: 133 QVVLLTEIRDLLAQ 146
>3hzq_A Large-conductance mechanosensitive channel; intermediate state
mechanosensitive channel osmoregulation, cell membrane,
ION transport; 3.82A {Staphylococcus aureus subsp}
Length = 114
Score = 90.6 bits (225), Expect = 1e-19
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 18/115 (15%)
Query: 3 QGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNY 62
+G+ + EFK+F +GNV+DL++ +++G AFN+++ S+VE+I+MPL+G + G+ +
Sbjct: 17 RGSHMLKEFKEFALKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEW 76
Query: 63 FLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQ 117
YG F +++F I+A +F+ ++ N L+K+
Sbjct: 77 ------------------SFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKK 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.8 bits (77), Expect = 0.015
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 48/117 (41%)
Query: 3 QGTP-----VFN----EFKKFIARGNV-------IDLSVGIIIGGAFNRVV----QSIV- 41
+G P + N + + ++ + N +++S ++ GA N VV QS+
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYG 388
Query: 42 -----EDIMMPLVGCVMGNGTD------------FSNYFLPLSSEIKSSLISEARKQ 81
P +G D FSN FLP++S S L+ A
Sbjct: 389 LNLTLRKAKAP-------SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 31.9 bits (73), Expect = 0.054
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 21 IDLSVGIIIGGAF----------NR--VVQSIVEDIMMPLVGCV----MGNGTDFSNYFL 64
+D +V + F NR V + + L + +G+G D
Sbjct: 269 LDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIG 328
Query: 65 PLSSEIK----SSLISEARKQGAVFAYGSFASVLVNFFILAGVV 104
PL E I++A ++GA G A F ++
Sbjct: 329 PLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTIL 372
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransferase); PLP-binding
enzyme, lysine biosynthesis, structural genomics; HET:
LLP; 2.00A {Mycobacterium tuberculosis H37RV}
Length = 411
Score = 30.5 bits (67), Expect = 0.14
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
T VF E R ++L G
Sbjct: 11 ATTVFAEMSALATRIGAVNLGQG 33
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 30.1 bits (66), Expect = 0.21
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
GT +F + + I+LS G
Sbjct: 16 GTTIFTQMSALAQQHQAINLSQG 38
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 29.0 bits (63), Expect = 0.41
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
V+ E+ + A+ ++L G
Sbjct: 23 TKSVWVEYIQLAAQYKPLNLGQG 45
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, alternative splicing,
aminotransferase, lyase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.8 bits (63), Expect = 0.43
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
+ V+ EF K A +V++L G
Sbjct: 9 DSNVWVEFTKLAADPSVVNLGQG 31
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, lyase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 27.4 bits (59), Expect = 1.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
+ EF K + +V++L G
Sbjct: 14 DYNPWVEFVKLASEHDVVNLGQG 36
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP:
c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 27.0 bits (58), Expect = 1.8
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
+F R ++L G
Sbjct: 11 KESIFPRMSGLAQRLGAVNLGQG 33
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3inj_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 2vle_A* 1cw3_A*
1ag8_A 1a4z_A
Length = 500
Score = 26.5 bits (58), Expect = 2.4
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 34 NRVVQSIVEDIMMPLVGCV----MGNGTDFSNYFLPLSSEIK----SSLISEARKQGAVF 85
V + I ++ + V +GN D P E + I+ +++GA
Sbjct: 308 TFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKL 367
Query: 86 AYGSFASVLVNFFILAGVV 104
G + +FI V
Sbjct: 368 LCGGGIAADRGYFIQPTVF 386
>3d6k_A Putative aminotransferase; APC82464, structural genomics, PSI-2,
protein structure initiative; 2.00A {Corynebacterium
diphtheriae}
Length = 422
Score = 26.3 bits (57), Expect = 2.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
V ++ + A+ +DL+ G
Sbjct: 18 REEVTAKYAELKAKNLSLDLTRG 40
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A*
Length = 517
Score = 25.0 bits (54), Expect = 6.5
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 33 FNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIK----SSLISEARKQGAVFAYG 88
+ V+ ++ + +GN + P + E K+GA G
Sbjct: 331 EESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCG 390
Query: 89 SFASVLVNFFILAGVV 104
FF V
Sbjct: 391 GNQVPRPGFFFQPTVF 406
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.141 0.395
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,137,580
Number of extensions: 46518
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 16
Length of query: 141
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 58
Effective length of database: 3,680,978
Effective search space: 213496724
Effective search space used: 213496724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)