HHsearch alignment for GI: 254780698 and conserved domain: COG1686
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=546.68 Aligned_cols=251 Identities=33% Similarity=0.522 Sum_probs=240.2
Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCEE
Q ss_conf 148763199999889628311369988-881387999999999975558988554111536761245-443225788568
Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF 126 (336)
Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~-~s~~~l~~g~~~ 126 (336)
T Consensus 34 ~~~~a~~aiviD~~sGkVLy~kn~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~~S~~~l~~G~~~ 113 (389)
T COG1686 34 PEIAAKAAIVIDADSGKVLYSKNADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGGGSKMFLKPGETV 113 (389)
T ss_pred CCCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCCEECCCCEE
T ss_conf 67666438999889984721328898878509999999999998764268884553335675663178765113469887
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 83024578899877777654554201005789998887688726612220024543333445301345555542013620
Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206 (336)
Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p 206 (336)
T Consensus 114 tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~~~~tTArDla~l~~~l~~~~P 193 (389)
T COG1686 114 TVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNPGQVTTARDLALLARALIRDYP 193 (389)
T ss_pred EHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89999999887445499999998717989999999999999858988876188788988874669899999999988483
Q ss_pred EEEEEEEEEEEEE--CCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 4677611565434--78699721010257-68700565224233371799999978979999981799878999999999
Q gi|254780698|r 207 QYYKYFSIRKFRY--RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283 (336)
Q Consensus 207 ~~~~~~s~~~~~~--~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~L 283 (336)
T Consensus 194 ~~~~~~s~~~~~~~~~~~~~~n~N~l~~~~~~g~dG~KTGyT~~AG~nlv~sa~~~grrli~Vvlg~~~~~~R~~~~~~L 273 (389)
T COG1686 194 EIYEISSTKSFTFPANKITQRNRNLLLWRKYPGVDGLKTGYTDEAGYNLVGSAKRNGRRLIAVVLGADSAKTRFEDAAKL 273 (389)
T ss_pred HHHHHCCEEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 65311412478871584011221302105788976302432456673179886338928999981899730069999999
Q ss_pred HHHHHCCCCCEEEEEC
Q ss_conf 9998401540343204
Q gi|254780698|r 284 ITSFLEKKTLKHQQTH 299 (336)
Q Consensus 284 l~~~f~~~~~~~~~~~ 299 (336)
T Consensus 274 l~~~f~~~~~~~~~~~ 289 (389)
T COG1686 274 LDWGFTNFETRKILKK 289 (389)
T ss_pred HHHHHHCCCCCCCCCC
T ss_conf 9987410333444445