HHsearch alignment for GI: 254780698 and conserved domain: PRK11113
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional.
Probab=99.16 E-value=1.9e-10 Score=81.17 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=93.6
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-HHHCC--CCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 83024578899877777654554201-------00578999888768-87266--1222002454333344530134555
Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFIS-------GSEKKFAILMSNKA-KKIGM--QNTIYKNASGLHDKNQITTARDQAI 196 (336)
Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~-------Gs~~~Fv~~MN~~A-~~lGl--~~t~f~np~Gl~~~~~~tta~Dla~ 196 (336)
T Consensus 294 pL~eiv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~~~~i~DGSGLSR~N-riSp~~l~~ 372 (477)
T PRK11113 294 PLHDLLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLGNTIIADGSGLSRHN-LIAPATMMQ 372 (477)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHH
T ss_conf 9999999998538469999999999998348999889999999999998409897777774588888244-729999999
Q ss_pred HHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE
Q ss_conf 5542013620467761156543478699721010257-687005652242333717999999-78979999981
Q gi|254780698|r 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336)
Q Consensus 197 l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336)
T Consensus 373 lL~~~~~~-~~~~~~~~sLPiaG~dGTL~~R~~~~~~~~~g~v~aKTGTL~-gV~sLAGYv~~~~G~~l~Fsi~ 444 (477)
T PRK11113 373 VLQYIAQH-DKELNLISMLPLAGYDGTLQYRGSLHQAPVDGKVSAKTGSLQ-GVYNLAGFITTASGQRMAFVQF 444 (477)
T ss_pred HHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEE
T ss_conf 99999869-427889974885677885455566667765686999874356-8357179999899599999999