HHsearch alignment for GI: 254780698 and conserved domain: PRK11397
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional.
Probab=100.00 E-value=0 Score=556.45 Aligned_cols=279 Identities=25% Similarity=0.397 Sum_probs=249.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 123435889999999999986203100------148763199999889628311369988-8813879999999999755
Q gi|254780698|r 22 IYIQRNIQLMGKILFLSIIMISMASEL------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQ 94 (336)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~ 94 (336)
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~i~A~sailiD~~TG~vLy~kN~d~~~~pAS~TKlMT~~v~~e~i~ 80 (390)
T PRK11397 1 MLLKRRLIIAASLFVFNLSSAFAAENIPFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAID 80 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94378999999999999999874045778999996553399999999996920129299848779999999999999997
Q ss_pred CCCCCCCCCCCCCHHHHC------CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 589885541115367612------45443225788568830245788998777776545542010057899988876887
Q gi|254780698|r 95 SKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168 (336)
Q Consensus 95 ~g~i~~~~~v~is~~a~~------~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~ 168 (336)
T Consensus 81 ~g~l~~d~~v~vs~~a~~~~~~~~~g~s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~ 160 (390)
T PRK11397 81 SHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEK 160 (390)
T ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 39999786599638787414876578722421589899999999998874423999999975279999999999999998
Q ss_pred HCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC-CCCCCEEEEECCCCC
Q ss_conf 2661222002454333344530134555554201362046776115654347869972101025-768700565224233
Q gi|254780698|r 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247 (336)
Q Consensus 169 lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~-~~~g~~G~KTG~T~~ 247 (336)
T Consensus 161 lG~~nT~F~np~GL~~~~~~tTA~Dla~la~~~i~~~P~~~~~~~~~~~~~~~~~~~n~N~ll~~~~~~vdGlKTG~T~~ 240 (390)
T PRK11397 161 LHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240 (390)
T ss_pred HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCEEEEEEECCEECCCCCCCHHCCCCCCCEEEECCCHH
T ss_conf 58987468544346788888899999999999741485563012167887789632775631012466711112046744
Q ss_pred CCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 37179999997897999998179987899999999999984015403432047
Q gi|254780698|r 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300 (336)
Q Consensus 248 AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f~~~~~~~~~~~~ 300 (336)
T Consensus 241 AG~~lv~ta~~~g~rlI~Vvlg~~~~~~r~~~~~~Ll~ygf~~f~~~~l~~~~ 293 (390)
T PRK11397 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRWGQQNFTTVQILHRG 293 (390)
T ss_pred HHCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCEEEEEECCC
T ss_conf 20817625323983999999589981058999999999998644799960489