Query gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 336 No_of_seqs 248 out of 3383 Neff 7.2 Searched_HMMs 39220 Date Sun May 29 20:16:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780698.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11397 dacD D-alanyl-D-alani 100.0 0 0 556.4 27.6 279 22-300 1-293 (390) 2 PRK10793 D-alanyl-D-alanine ca 100.0 0 0 547.6 28.4 278 21-298 3-299 (403) 3 PRK10001 D-alanyl-D-alanine ca 100.0 0 0 548.0 26.7 250 49-298 35-292 (400) 4 COG1686 DacC D-alanyl-D-alanin 100.0 0 0 546.7 22.2 251 49-299 34-289 (389) 5 PRK11669 pbpG D-alanyl-D-alani 100.0 0 0 477.4 22.1 231 52-288 39-278 (308) 6 pfam00768 Peptidase_S11 D-alan 100.0 0 0 468.8 21.4 226 47-272 6-241 (241) 7 COG2367 PenP Beta-lactamase cl 99.4 5E-12 1.3E-16 90.7 10.2 213 53-272 64-299 (329) 8 PRK11113 D-alanyl-D-alanine ca 99.2 1.9E-10 5E-15 81.2 8.5 139 127-268 294-444 (477) 9 pfam00905 Transpeptidase Penic 98.6 6.7E-06 1.7E-10 54.1 16.5 206 55-271 2-276 (296) 10 PRK10795 penicillin-binding pr 98.6 1.4E-05 3.6E-10 52.2 16.9 225 52-291 269-615 (619) 11 PRK11289 ampC beta-lactamase; 98.5 9.3E-05 2.4E-09 47.3 18.2 121 74-203 83-265 (387) 12 TIGR03423 pbp2_mrdA penicillin 98.2 0.00037 9.4E-09 43.7 19.3 110 52-175 247-393 (592) 13 pfam00144 Beta-lactamase Beta- 98.2 3.4E-05 8.7E-10 49.9 10.8 137 57-203 18-235 (327) 14 PRK10662 beta-lactamase/D-alan 98.1 1.2E-05 3E-10 52.6 7.3 172 25-204 2-270 (377) 15 pfam02113 Peptidase_S13 D-Ala- 97.9 0.00011 2.8E-09 46.9 9.2 179 83-268 190-381 (383) 16 COG2027 DacB D-alanyl-D-alanin 97.4 0.0017 4.2E-08 39.8 9.2 140 126-270 293-443 (470) 17 PRK09506 mrcB penicillin-bindi 97.0 0.024 6.2E-07 32.9 16.9 140 54-201 470-624 (839) 18 PRK13128 D-aminopeptidase; Rev 97.0 0.0058 1.5E-07 36.6 7.9 43 61-104 30-86 (518) 19 PRK03642 hypothetical protein; 96.9 0.0013 3.4E-08 40.4 4.5 52 55-106 57-130 (432) 20 PRK11636 mrcA peptidoglycan sy 96.8 0.034 8.7E-07 32.0 13.2 136 54-199 427-578 (850) 21 COG0768 FtsI Cell division pro 96.4 0.031 7.9E-07 32.2 8.5 229 52-290 266-591 (599) 22 COG2027 DacB D-alanyl-D-alanin 96.3 0.011 2.9E-07 34.8 5.8 101 54-159 38-144 (470) 23 TIGR02074 PBP_1a_fam penicilli 96.3 0.031 7.9E-07 32.2 8.0 140 53-199 368-537 (700) 24 TIGR00666 PBP4 D-alanyl-D-alan 96.2 0.0031 7.8E-08 38.2 2.5 176 88-268 233-424 (427) 25 COG1680 AmpC Beta-lactamase cl 95.5 0.0083 2.1E-07 35.7 2.1 32 75-106 88-120 (390) 26 COG2602 Beta-lactamase class D 94.9 0.27 6.8E-06 26.7 12.4 204 55-285 31-247 (254) 27 TIGR00666 PBP4 D-alanyl-D-alan 94.6 0.25 6.3E-06 26.9 7.7 42 63-105 1-43 (427) 28 PRK11240 penicillin-binding pr 93.8 0.45 1.2E-05 25.3 13.3 222 53-289 300-562 (770) 29 COG0744 MrcB Membrane carboxyp 91.0 1.1 2.7E-05 23.1 8.5 135 53-201 327-476 (661) 30 pfam02113 Peptidase_S13 D-Ala- 89.2 0.26 6.7E-06 26.7 2.2 29 77-106 1-29 (383) 31 KOG4038 consensus 51.4 11 0.00027 17.1 2.0 36 56-91 20-61 (150) 32 TIGR01162 purE phosphoribosyla 51.0 7.6 0.00019 18.0 1.3 42 264-306 1-43 (159) 33 TIGR02079 THD1 threonine dehyd 41.3 18 0.00046 15.7 2.0 63 233-295 273-337 (415) 34 pfam05643 DUF799 Putative bact 38.8 22 0.00056 15.2 2.1 11 162-172 77-87 (215) 35 pfam01011 PQQ PQQ enzyme repea 37.0 27 0.00068 14.7 2.3 21 55-75 11-31 (38) 36 COG0041 PurE Phosphoribosylcar 36.3 28 0.00072 14.6 3.8 24 263-286 4-27 (162) 37 TIGR02214 spoVD_pbp stage V sp 34.7 26 0.00065 14.8 1.9 224 53-295 248-586 (660) 38 TIGR01357 aroB 3-dehydroquinat 32.7 15 0.00039 16.2 0.5 129 156-288 38-181 (361) 39 COG2066 GlsA Glutaminase [Amin 32.7 32 0.00082 14.2 4.3 42 52-93 38-80 (309) 40 PRK00971 glutaminase; Provisio 30.6 35 0.00089 14.0 4.6 40 54-93 39-79 (308) 41 pfam03413 PepSY Peptidase prop 30.3 35 0.0009 14.0 2.1 14 56-69 45-58 (59) 42 pfam04960 Glutaminase Glutamin 28.3 38 0.00098 13.8 4.6 42 52-93 15-57 (286) 43 TIGR02071 PBP_1b penicillin-bi 26.7 41 0.001 13.6 7.5 233 54-298 414-700 (742) 44 pfam05351 GMP_PDE_delta GMP-PD 25.7 42 0.0011 13.6 1.7 17 56-72 14-30 (156) 45 COG0337 AroB 3-dehydroquinate 25.4 25 0.00064 14.9 0.5 127 158-288 48-189 (360) 46 PRK13951 bifunctional shikimat 25.3 42 0.0011 13.5 1.7 69 220-288 262-332 (488) 47 COG3212 Predicted membrane pro 24.6 44 0.0011 13.5 1.6 33 56-88 54-93 (144) 48 TIGR01179 galE UDP-glucose 4-e 22.4 17 0.00045 15.8 -0.8 52 120-171 265-316 (341) 49 COG3417 FlgN Collagen-binding 21.8 50 0.0013 13.1 1.5 19 28-46 4-22 (200) 50 TIGR00477 tehB tellurite resis 20.9 49 0.0012 13.2 1.3 94 166-262 77-185 (239) 51 pfam03482 SIC sic protein. Ser 20.1 56 0.0014 12.8 1.8 32 22-53 1-32 (306) No 1 >PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional Probab=100.00 E-value=0 Score=556.45 Aligned_cols=279 Identities=25% Similarity=0.397 Sum_probs=249.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHH Q ss_conf 123435889999999999986203100------148763199999889628311369988-8813879999999999755 Q gi|254780698|r 22 IYIQRNIQLMGKILFLSIIMISMASEL------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQ 94 (336) Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~ 94 (336) ++++|++.+...++.+++.......+. +...+.||||||++||+|||+||+|++ +|||+|||||+|+++|+++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~i~A~sailiD~~TG~vLy~kN~d~~~~pAS~TKlMT~~v~~e~i~ 80 (390) T PRK11397 1 MLLKRRLIIAASLFVFNLSSAFAAENIPFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAID 80 (390) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 94378999999999999999874045778999996553399999999996920129299848779999999999999997 Q ss_pred CCCCCCCCCCCCCHHHHC------CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 589885541115367612------45443225788568830245788998777776545542010057899988876887 Q gi|254780698|r 95 SKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK 168 (336) Q Consensus 95 ~g~i~~~~~v~is~~a~~------~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~ 168 (336) +|+++|++++++|+++|. .++|.+++++|+++|++|||+|+|+.||||||++|||+++|++++|+++||++|++ T Consensus 81 ~g~l~~d~~v~vs~~a~~~~~~~~~g~s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~ 160 (390) T PRK11397 81 SHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEK 160 (390) T ss_pred CCCCCCCCEEEECHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 39999786599638787414876578722421589899999999998874423999999975279999999999999998 Q ss_pred HCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC-CCCCCEEEEECCCCC Q ss_conf 2661222002454333344530134555554201362046776115654347869972101025-768700565224233 Q gi|254780698|r 169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN 247 (336) Q Consensus 169 lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~-~~~g~~G~KTG~T~~ 247 (336) |||+||||.||+||++++|+|||+||++|++++++++|++++++++++++|+++++.|+|.||+ ++.++||+|||||++ T Consensus 161 lG~~nT~F~np~GL~~~~~~tTA~Dla~la~~~i~~~P~~~~~~~~~~~~~~~~~~~n~N~ll~~~~~~vdGlKTG~T~~ 240 (390) T PRK11397 161 LHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG 240 (390) T ss_pred HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCEEEEEEECCEECCCCCCCHHCCCCCCCEEEECCCHH T ss_conf 58987468544346788888899999999999741485563012167887789632775631012466711112046744 Q ss_pred CCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 37179999997897999998179987899999999999984015403432047 Q gi|254780698|r 248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300 (336) Q Consensus 248 AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f~~~~~~~~~~~~ 300 (336) ||+|||++++|||+|+|+||||+++.+.|+.++++|+||||++|..+...... T Consensus 241 AG~~lv~ta~~~g~rlI~Vvlg~~~~~~r~~~~~~Ll~ygf~~f~~~~l~~~~ 293 (390) T PRK11397 241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRWGQQNFTTVQILHRG 293 (390) T ss_pred HHCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCEEEEEECCC T ss_conf 20817625323983999999589981058999999999998644799960489 No 2 >PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional Probab=100.00 E-value=0 Score=547.56 Aligned_cols=278 Identities=27% Similarity=0.381 Sum_probs=250.7 Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHCCCCC----------CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHH Q ss_conf 51234358899999-99999986203100----------148763199999889628311369988-8813879999999 Q gi|254780698|r 21 SIYIQRNIQLMGKI-LFLSIIMISMASEL----------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI 88 (336) Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v 88 (336) .|++.|.+..+.+. ++|..+..+..++. +...+.||||||++||+|||+||+|++ +|||+|||||+|+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~i~A~sailiD~~TG~VLy~kNad~~~~pAS~TKlMT~~l 82 (403) T PRK10793 3 TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYV 82 (403) T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 46428899999999999999876542110014563799897554199999999994913109499958779999999999 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHCC------CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9997555898855411153676124------5443225788568830245788998777776545542010057899988 Q gi|254780698|r 89 IFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162 (336) Q Consensus 89 ~le~i~~g~i~~~~~v~is~~a~~~------~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~M 162 (336) ++|++++|+++|+++|++|+++|.. ++|.+++++|+.+|++|||+|+|+.||||||++|||+++||+++|+++| T Consensus 83 v~eai~~g~l~~~d~v~vs~~a~~~~~~~~~g~s~~~l~~G~~~tv~dLl~gl~i~SaNDAa~aLAe~i~Gs~~~Fv~~M 162 (403) T PRK10793 83 IGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLM 162 (403) T ss_pred HHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99999759999888599658998514876678742541589899999999975652435999999975069899999999 Q ss_pred HHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEE Q ss_conf 87688726612220024543333445301345555542013620467761156543478699721010257-68700565 Q gi|254780698|r 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIK 241 (336) Q Consensus 163 N~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~K 241 (336) |++|++|||+||||+||+||++++|+|||+||++|++++++++|+++.+++.+.++++++.+.|+|.||+. +.|+||+| T Consensus 163 N~kA~eLG~~nT~F~np~GL~~~~~~tTA~Dla~la~~l~~~~p~~~~~~~~~~~~~~~~~~~n~N~lL~~~~~~vdGlK 242 (403) T PRK10793 163 NSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK 242 (403) T ss_pred HHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCEEEECCCHHHHCCCCCCCCEE T ss_conf 99999858987454478777676765588999999999987484124787778998789886321266444677853100 Q ss_pred ECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 224233371799999978979999981799878999999999999840154034320 Q gi|254780698|r 242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT 298 (336) Q Consensus 242 TG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f~~~~~~~~~~ 298 (336) ||||++||+|||++++|||+|+|+||||+++.+.|+.|+++|+||||++|....... T Consensus 243 TG~T~~AG~~lv~sa~r~g~rlI~Vvlg~~s~~~R~~d~~~Ll~ygf~~f~~~~~~~ 299 (403) T PRK10793 243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVNPLK 299 (403) T ss_pred CCCCCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEECC T ss_conf 244455770678999858969999992899810789999999999987338986226 No 3 >PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional Probab=100.00 E-value=0 Score=547.96 Aligned_cols=250 Identities=29% Similarity=0.421 Sum_probs=236.4 Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC------CCCCCCCC Q ss_conf 148763199999889628311369988-88138799999999997555898855411153676124------54432257 Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLK 121 (336) Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~------~~s~~~l~ 121 (336) +...+.||||||++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++|++|+++|.. ++|.++++ T Consensus 35 P~i~A~sail~D~~TG~VLy~Kn~d~~~~pAS~TKlMTa~lv~eai~~g~i~ld~~v~vs~~a~~~~~~~~~g~S~~~l~ 114 (400) T PRK10001 35 PSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLK 114 (400) T ss_pred CCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEEEEC T ss_conf 97453189999999995945309399848779999999999999986599987864772489985247655687424423 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 88568830245788998777776545542010057899988876887266122200245433334453013455555420 Q gi|254780698|r 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201 (336) Q Consensus 122 ~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~ 201 (336) +|++++|+|||+++|+.||||||++|||+++|++++|+++||++|++|||+||||.||+||++++|++||+||++|++++ T Consensus 115 ~g~~~tv~dLL~~lli~SaNDAA~aLAe~i~Gs~~~Fv~~MN~kA~~LG~~nT~F~np~GL~~~~~~sTA~Dla~la~~l 194 (400) T PRK10001 115 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKAL 194 (400) T ss_pred CCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 79898999999998774425999999972355689999999999998289875435664366754445599999999988 Q ss_pred CCCCEEEEEEEEEEEEEECCEEEEEECHHCCCC-CCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHH Q ss_conf 136204677611565434786997210102576-8700565224233371799999978979999981799878999999 Q gi|254780698|r 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280 (336) Q Consensus 202 ~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~~-~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~ 280 (336) +.++|+++.++++++++++++.+.|+|+||+.. .|+||+|||||++||||||++++|||+|+|+||||+++.+.||.|+ T Consensus 195 ~~~~p~~~~~~~~~~~t~~~~~~~N~N~lL~~~~~~vdGlKTG~t~~AG~~lv~ta~r~g~rlI~VVlga~s~~~R~~dt 274 (400) T PRK10001 195 IHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNES 274 (400) T ss_pred HCCCCHHEEEEEEEEEEECCEEEECCCCCCCCCCCCCEEEEECCCHHCCCCHHHEEECCCCEEEEEEECCCCCCHHHHHH T ss_conf 60683413753478998788897221431126777850376133432377143244338958999994899920799999 Q ss_pred HHHHHHHHCCCCCEEEEE Q ss_conf 999999840154034320 Q gi|254780698|r 281 LELITSFLEKKTLKHQQT 298 (336) Q Consensus 281 ~~Ll~~~f~~~~~~~~~~ 298 (336) ++||||||++|....... T Consensus 275 ~~Ll~ygf~~f~~~~~~~ 292 (400) T PRK10001 275 EKLLTWGFRFFETVTPIK 292 (400) T ss_pred HHHHHHHHHHCEEEEEEC T ss_conf 999999986168887504 No 4 >COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=0 Score=546.68 Aligned_cols=251 Identities=33% Similarity=0.522 Sum_probs=240.2 Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCEE Q ss_conf 148763199999889628311369988-881387999999999975558988554111536761245-443225788568 Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF 126 (336) Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~-~s~~~l~~g~~~ 126 (336) +..++.+|||||++||+|||+||+|.+ +|||||||||+||++|++++|+++|+++|++|+++|..+ +|.+++++|+.+ T Consensus 34 ~~~~a~~aiviD~~sGkVLy~kn~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~~S~~~l~~G~~~ 113 (389) T COG1686 34 PEIAAKAAIVIDADSGKVLYSKNADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGGGSKMFLKPGETV 113 (389) T ss_pred CCCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCCEECCCCEE T ss_conf 67666438999889984721328898878509999999999998764268884553335675663178765113469887 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCE Q ss_conf 83024578899877777654554201005789998887688726612220024543333445301345555542013620 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP 206 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p 206 (336) +++|||+++++.|+||||++|||+++|++++|+++||++|++|||+||||+|||||++++|++||+||++|++++++++| T Consensus 114 tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~~~~tTArDla~l~~~l~~~~P 193 (389) T COG1686 114 TVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNPGQVTTARDLALLARALIRDYP 193 (389) T ss_pred EHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 89999999887445499999998717989999999999999858988876188788988874669899999999988483 Q ss_pred EEEEEEEEEEEEE--CCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHH Q ss_conf 4677611565434--78699721010257-68700565224233371799999978979999981799878999999999 Q gi|254780698|r 207 QYYKYFSIRKFRY--RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283 (336) Q Consensus 207 ~~~~~~s~~~~~~--~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~L 283 (336) ++++++++++++| +++.++|+|.+++. |+|+||+|||||++||||||+++++||||+|+||||+++...||.|+.+| T Consensus 194 ~~~~~~s~~~~~~~~~~~~~~n~N~l~~~~~~g~dG~KTGyT~~AG~nlv~sa~~~grrli~Vvlg~~~~~~R~~~~~~L 273 (389) T COG1686 194 EIYEISSTKSFTFPANKITQRNRNLLLWRKYPGVDGLKTGYTDEAGYNLVGSAKRNGRRLIAVVLGADSAKTRFEDAAKL 273 (389) T ss_pred HHHHHCCEEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHH T ss_conf 65311412478871584011221302105788976302432456673179886338928999981899730069999999 Q ss_pred HHHHHCCCCCEEEEEC Q ss_conf 9998401540343204 Q gi|254780698|r 284 ITSFLEKKTLKHQQTH 299 (336) Q Consensus 284 l~~~f~~~~~~~~~~~ 299 (336) ++|+|+.+........ T Consensus 274 l~~~f~~~~~~~~~~~ 289 (389) T COG1686 274 LDWGFTNFETRKILKK 289 (389) T ss_pred HHHHHHCCCCCCCCCC T ss_conf 9987410333444445 No 5 >PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional Probab=100.00 E-value=0 Score=477.40 Aligned_cols=231 Identities=26% Similarity=0.326 Sum_probs=208.6 Q ss_pred CCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCEEEEE Q ss_conf 763199999889628311369988-88138799999999997555898855411153-6761245443225788568830 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTE 129 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is-~~a~~~~~s~~~l~~g~~~tv~ 129 (336) .+.||||||++||+|||+||+|++ +|||+|||||+|+++|+ ++.+|++++++ ......+++..+++.|++++++ T Consensus 39 ~A~sail~D~~TG~VLy~kn~d~~~~pAS~TKlMTalv~le~----~~~ld~~v~v~~~~~~~~~~~~s~l~~G~~~tv~ 114 (308) T PRK11669 39 ASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDA----KLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRK 114 (308) T ss_pred CCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC----CCCCCCEEEEEHHHHHHCCCCCCCCCCCCEEEHH T ss_conf 540899999999969001582998487899999999999817----8998876997677620006874433479888899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 24578899877777654554201005789998887688726612220024543333445301345555542013620467 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) |||+++|+.|+||||++|||+++|++++|+++||++|++|||+||||+||+||+ ++|+|||+||++|++++ .+||.|. T Consensus 115 dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~np~GL~-~~n~sTA~DLA~L~~~a-~~~P~~~ 192 (308) T PRK11669 115 DMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVEPTGLS-VHNVSTARDLTKLLIAS-KQYPLIG 192 (308) T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCC-CCCEECHHHHHHHHHHH-HHCCHHH T ss_conf 999999874652999999997076799999999999998299988886899989-88803899999999999-8596122 Q ss_pred EEEEEEEEE--ECC----EEEEEECHHCCCCC-CCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHH Q ss_conf 761156543--478----69972101025768-70056522423337179999997897999998179987899999999 Q gi|254780698|r 210 KYFSIRKFR--YRN----RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282 (336) Q Consensus 210 ~~~s~~~~~--~~~----~~~~n~N~lL~~~~-g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~ 282 (336) ++..+++++ ++. +.+.|+|+||+.++ +++|+|||||++||||||++++|||||+|+||||++++..||.|+.+ T Consensus 193 ~~~~t~~~~~~~~~~~~~~~~~NtN~LL~~~~~~i~g~KTG~T~~AG~clV~tA~r~grrlI~VVL~a~gk~~~f~da~r 272 (308) T PRK11669 193 QLSTTREKTVTFRKPNYTLPFRNTNHLVYKDNWNIQLTKTGFTNAAGHCLVMRTVINNRPVALVVLDAFGKYTHFADASR 272 (308) T ss_pred EEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCHHHHHH T ss_conf 04346679998367751531233460213578895707646664357766899999997999999289998663899999 Q ss_pred HHHHHH Q ss_conf 999984 Q gi|254780698|r 283 LITSFL 288 (336) Q Consensus 283 Ll~~~f 288 (336) |++|-- T Consensus 273 l~~w~~ 278 (308) T PRK11669 273 LRTWIE 278 (308) T ss_pred HHHHHH T ss_conf 999998 No 6 >pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase. Probab=100.00 E-value=0 Score=468.82 Aligned_cols=226 Identities=31% Similarity=0.463 Sum_probs=211.1 Q ss_pred CCCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC----CCCCCCCCC Q ss_conf 00148763199999889628311369988-8813879999999999755589885541115367612----454432257 Q gi|254780698|r 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLK 121 (336) Q Consensus 47 ~~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~----~~~s~~~l~ 121 (336) +++...+.||||+|++||+|||+||++++ +|||+|||||+|+++|++++++++++++|++++.++. .+++.++++ T Consensus 6 ~~P~i~A~saiv~D~~tg~iL~~kn~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~~~l~ 85 (241) T pfam00768 6 SAPEIAAKSAILVDYNTGKVLYEKNADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSNMFLK 85 (241) T ss_pred CCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCEEEEC T ss_conf 99856512999999999979000690998177899999999999997562898854442101889986378887346534 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 88568830245788998777776545542010057899988876887266122200245433334453013455555420 Q gi|254780698|r 122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL 201 (336) Q Consensus 122 ~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~ 201 (336) +|+.++++|||+++|++|+||||++|||+++|++++|+++||++|++|||++|||.||+||++++|+|||+||++|++++ T Consensus 86 ~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np~GL~~~~~~sTA~Dla~l~~~~ 165 (241) T pfam00768 86 PGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNPTGLDNHGQYSSARDLAILARAL 165 (241) T ss_pred CCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECHHHHHHHHHHH T ss_conf 89998899999999875645999999998458299999999999998199998666687777888666799999999999 Q ss_pred CCCCEEEEEEEEEEEEEECC----EEEEEECHHCCCCC-CCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC Q ss_conf 13620467761156543478----69972101025768-7005652242333717999999789799999817998 Q gi|254780698|r 202 RKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272 (336) Q Consensus 202 ~~~~p~~~~~~s~~~~~~~~----~~~~n~N~lL~~~~-g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s 272 (336) ++++|+++.+++...+++.+ +++.|+|.+|..+. +++|+|||||++||+|||++++|||+|+|+||||++| T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~NtN~ll~~~~~~v~G~KTG~T~~AG~clv~~a~~~g~~~I~VvLgs~s 241 (241) T pfam00768 166 IKDLPEVLSITKEKSATFNTPIYKINWMNTNGLLYRKGGNVDGLKTGYTKEAGYCLVATATEGGMRVISVVLNADT 241 (241) T ss_pred HHHCHHHEEEEEEEEEEECCCCCEEEEECCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCC T ss_conf 8749584088877899974787358997379510057985799995253166645999999999899999949999 No 7 >COG2367 PenP Beta-lactamase class A [Defense mechanisms] Probab=99.38 E-value=5e-12 Score=90.65 Aligned_cols=213 Identities=23% Similarity=0.219 Sum_probs=139.2 Q ss_pred CCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC--CCCCCCEEEEE Q ss_conf 6319999988962831136998888-13879999999999755589885541115367612454432--25788568830 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTE 129 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~--~l~~g~~~tv~ 129 (336) .....+.|.++| .+.+-|.++++| ||+-|+--+..++++++.|++.|++++++++ ...+++|.+ ....|..++++ T Consensus 64 ~~~~~v~d~~t~-~~~~~n~~~~fp~aSt~K~~v~~a~l~~v~~G~~~l~e~~ti~~-d~~~~~s~~~~~~~~g~~~t~~ 141 (329) T COG2367 64 RVGVYVLDVDTG-ELIAINGDERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITK-DDRVGGSGVLQYLVGGGGSTLR 141 (329) T ss_pred EEEEEEEECCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHCCCCCHHEEECCCCCEEHH T ss_conf 267999966887-31311577521257899999999999971457557554201043-3322576111131578835799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCC--------CCCCCC----CCCCHHHHHHH Q ss_conf 245788998777776545542010057899988876887266122200245--------433334----45301345555 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS--------GLHDKN----QITTARDQAIL 197 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~--------Gl~~~~----~~tta~Dla~l 197 (336) |++..|+..|.|-|...|.+.++|- ...|.+.+++||..|+...+- |-++.. ..+++.+...+ T Consensus 142 el~~~mi~~SDNtAtnmLi~rlg~~-----~~v~~~l~~~Gl~~t~~~~~~~~~ln~~~~~~d~~~~~~~~t~a~~~~~L 216 (329) T COG2367 142 ELLTKMITASDNTATNMLIERLGGP-----KALNEWLRSIGLPNTRLRRPYMPDLNRFNGPYDPRDSGKTTTPADDAATL 216 (329) T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCH-----HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 9996522214028889999993581-----99999999818832231000266200266776633355656878999999 Q ss_pred HHHHCCCCEEEEEEE-EEEEEEECCEEEEEEC---HHC---CCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEEC Q ss_conf 542013620467761-1565434786997210---102---576870056522423337179999997897-99999817 Q gi|254780698|r 198 GILLRKNFPQYYKYF-SIRKFRYRNRIITNHN---KLL---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMG 269 (336) Q Consensus 198 ~~~~~~~~p~~~~~~-s~~~~~~~~~~~~n~N---~lL---~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg 269 (336) .+.++.....--... ..-.+-.....+.|+. .++ ....+.++-|||.......+=++.....+. .+++.+++ T Consensus 217 ~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~~ia~K~G~~l~~~~~D~~~~~~~~~~~~v~~~~~ 296 (329) T COG2367 217 LQLILGAVLSPSDRATGLSGYLAEWALLANTIGRDWLLRAGLPFDWAIAHKTGTGLGGTANDVGIIWAPVPKPIVAAVIG 296 (329) T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEE T ss_conf 99873355785422344058888789986266864320103874422304656346788776378856988448999973 Q ss_pred CCC Q ss_conf 998 Q gi|254780698|r 270 MPT 272 (336) Q Consensus 270 ~~s 272 (336) ... T Consensus 297 ~~~ 299 (329) T COG2367 297 ERP 299 (329) T ss_pred CCC T ss_conf 476 No 8 >PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional Probab=99.16 E-value=1.9e-10 Score=81.17 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=93.6 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-HHHCC--CCCCEECCCCCCCCCCCCCHHHHHH Q ss_conf 83024578899877777654554201-------00578999888768-87266--1222002454333344530134555 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFIS-------GSEKKFAILMSNKA-KKIGM--QNTIYKNASGLHDKNQITTARDQAI 196 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~-------Gs~~~Fv~~MN~~A-~~lGl--~~t~f~np~Gl~~~~~~tta~Dla~ 196 (336) ++.++++.|+-.|.|--|..|...++ |+.+.-.+.+.+.. .++|+ .+..+.|.+||...+ ..|++.|.. T Consensus 294 pL~eiv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~~~~i~DGSGLSR~N-riSp~~l~~ 372 (477) T PRK11113 294 PLHDLLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLGNTIIADGSGLSRHN-LIAPATMMQ 372 (477) T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHH T ss_conf 9999999998538469999999999998348999889999999999998409897777774588888244-729999999 Q ss_pred HHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE Q ss_conf 5542013620467761156543478699721010257-687005652242333717999999-78979999981 Q gi|254780698|r 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336) Q Consensus 197 l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336) +..++..+ |....+...-..-....++.+++.+... ..|-.=.|||+-+ .=.||.+... ++|++++.++| T Consensus 373 lL~~~~~~-~~~~~~~~sLPiaG~dGTL~~R~~~~~~~~~g~v~aKTGTL~-gV~sLAGYv~~~~G~~l~Fsi~ 444 (477) T PRK11113 373 VLQYIAQH-DKELNLISMLPLAGYDGTLQYRGSLHQAPVDGKVSAKTGSLQ-GVYNLAGFITTASGQRMAFVQF 444 (477) T ss_pred HHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEE T ss_conf 99999869-427889974885677885455566667765686999874356-8357179999899599999999 No 9 >pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family. Probab=98.65 E-value=6.7e-06 Score=54.11 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=107.3 Q ss_pred CEEEEECCCCEEEEE-CCC----C------------C-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 199999889628311-369----9------------8-888138799999999997555898855411153676124544 Q gi|254780698|r 55 SSIVIDVNKNQMTGF-KQD----E------------P-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336) Q Consensus 55 sAiv~D~~tG~ILy~-Kn~----~------------~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336) |+|+||.+||+||.- -.+ + . +.|.|+-|.+|+..+|| +|.+.+++.+..... ...++. T Consensus 2 a~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe---~g~~~~~~~~~~~~~-~~~~~~ 77 (296) T pfam00905 2 SAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALD---NGILKPEETFDDWPG-LPVGGY 77 (296) T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH---CCCCCCCCCCCCCCC-CCCCCC T ss_conf 5999989999299998689889787664222187668658848999999999998---799887611147764-347993 Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC--------------- Q ss_conf 32257885688302457889987777765455420100578999888768872661222002454--------------- Q gi|254780698|r 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG--------------- 181 (336) Q Consensus 117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G--------------- 181 (336) .. -.......-.--++-.+..|.|-..+-|++.++. +.+.+.++++|+....-....+ T Consensus 78 ~~-~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~------~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~~~~ 150 (296) T pfam00905 78 TI-KDWNQDGSGTITLREALEYSSNWYFQQLALKLGK------DKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRGDGA 150 (296) T ss_pred CE-ECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 22-4689998875549999985096778999997084------7899999971888776888864435667775543101 Q ss_pred ---CCCCCCCCCHHHHHHHHHHHCCC----CEEEEEEEEEE-EEEEC-CEEEE-----EECHHC-----------CCCCC Q ss_conf ---33334453013455555420136----20467761156-54347-86997-----210102-----------57687 Q gi|254780698|r 182 ---LHDKNQITTARDQAILGILLRKN----FPQYYKYFSIR-KFRYR-NRIIT-----NHNKLL-----------NKMHN 236 (336) Q Consensus 182 ---l~~~~~~tta~Dla~l~~~~~~~----~p~~~~~~s~~-~~~~~-~~~~~-----n~N~lL-----------~~~~g 236 (336) +-......|+.+|+.....+..+ .|.+.+-.... ..... ...+. .-..+| ..... T Consensus 151 ~~~~G~G~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~~~~~~is~~~a~~v~~~l~~vv~~gt~~~~~~~~ 230 (296) T pfam00905 151 TTAWGQGSLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLKLVVNDGGGAAAVPGY 230 (296) T ss_pred HEEEECCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 01010676622699999999998719968376999500147898222340389999999999998507788743346897 Q ss_pred CEEEEECCCCCCC----------CEEEEEEEECCEEEE-EEEECCC Q ss_conf 0056522423337----------179999997897999-9981799 Q gi|254780698|r 237 IDGIKTGYTRNSG----------FNIVTSLRYKDDPIV-AVVMGMP 271 (336) Q Consensus 237 ~~G~KTG~T~~AG----------~clv~~a~~~g~~lI-~Vvlg~~ 271 (336) -.+.|||++.... .-|++.+--++-++. +|+++.+ T Consensus 231 ~vaGKTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~~~ 276 (296) T pfam00905 231 KVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDP 276 (296) T ss_pred CEEEEEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC T ss_conf 2689982536658888878865899999998799829999998668 No 10 >PRK10795 penicillin-binding protein 2; Provisional Probab=98.59 E-value=1.4e-05 Score=52.18 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=122.8 Q ss_pred CCCCEEEEECCCCEEEEE-CC-------------------------------C-CCCC-CCHHHHHHHHHHHHHHHHCCC Q ss_conf 763199999889628311-36-------------------------------9-9888-813879999999999755589 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGF-KQ-------------------------------D-EPRY-PASLTKMMTLYIIFEYLQSKK 97 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~-Kn-------------------------------~-~~~~-PASlTKlMTa~v~le~i~~g~ 97 (336) ...++||||.+||+||.- .. + ...| |+|+=|++|+..+|| .|. T Consensus 269 ~~gavVvmd~~TGeILAmaS~P~fdpN~~~~~~~~~~~~~~~~~~~~p~~Nra~~~~yePGStfK~~t~~aaLe---~g~ 345 (619) T PRK10795 269 SRAAVVVTDPRTGGILALVSNPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALS---AGV 345 (619) T ss_pred CCCEEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHEECCCCCCCCHHHHHHHHHHH---CCC T ss_conf 77259999679884899981687784664157787889986338676520211011668986069999999997---499 Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCC----CC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC Q ss_conf 885541115367612454432257----88-5688302457889987777765455420100578999888768872661 Q gi|254780698|r 98 LHLNTQIPVSKTAATQNPSKLYLK----EK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172 (336) Q Consensus 98 i~~~~~v~is~~a~~~~~s~~~l~----~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~ 172 (336) +++++.+.. ...+..++....++ .| ..++ +...+..|.|...+-+|..++. +.|.+.++.+|+. T Consensus 346 i~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~G~~~----~~~al~~SsNv~~~~i~~~lg~------~~~~~~~~~fG~g 414 (619) T PRK10795 346 ITRNTSLFD-PGWWQLPGSEKRYRDWKKWGHGRLN----VTKSLEESADTFFYQVAYDMGI------DRLSEWMGKFGYG 414 (619) T ss_pred CCCCCEEEE-CCCEEECCCCCCCCCCCCCCCCCCH----HHHHHHHCCCHHHHHHHHHHCC------HHHHHHHHHCCCC T ss_conf 999977960-9933767886225668889997400----8889886355999999887052------2554455532788 Q ss_pred CCCEECC----CCCC-CC---------------------CC---CCCHHHHHHHHHHHCCC----CEEEEEEEEEEE--E Q ss_conf 2220024----5433-33---------------------44---53013455555420136----204677611565--4 Q gi|254780698|r 173 NTIYKNA----SGLH-DK---------------------NQ---ITTARDQAILGILLRKN----FPQYYKYFSIRK--F 217 (336) Q Consensus 173 ~t~f~np----~Gl~-~~---------------------~~---~tta~Dla~l~~~~~~~----~p~~~~~~s~~~--~ 217 (336) ...-..- .|+- .. +| ..|+--|+.....+... .|.+..-..... . T Consensus 415 ~~tgi~lp~E~~G~~p~~~w~~~~~~~~w~~~~~~~~siGQG~~~~TPlQla~~~~aiaN~G~~~~P~lv~~~~~~~~~v 494 (619) T PRK10795 415 HYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQV 494 (619) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEE T ss_conf 76688876655786787566542024666645455541204255635999999999996398086347998751489664 Q ss_pred EECC---EEEEE--E-----------------C----HHCCCCCCCEEEEECCCCCCC------C-------------EE Q ss_conf 3478---69972--1-----------------0----102576870056522423337------1-------------79 Q gi|254780698|r 218 RYRN---RIITN--H-----------------N----KLLNKMHNIDGIKTGYTRNSG------F-------------NI 252 (336) Q Consensus 218 ~~~~---~~~~n--~-----------------N----~lL~~~~g~~G~KTG~T~~AG------~-------------cl 252 (336) .+.. ..... . + ......++-.|+|||+....| + .| T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~m~~Vv~~~~GT~~~~~~~~~~~vaGKTGTAqv~~~~~~~~~~~~~~~~~~~~hawf 574 (619) T PRK10795 495 PWVQPHEPPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLM 574 (619) T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 20366655445557789999999999867279952560005899679998253246366787532343345456777599 Q ss_pred EEEEEECCEEEEEEEE---CCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 9999978979999981---79987899999999999984015 Q gi|254780698|r 253 VTSLRYKDDPIVAVVM---GMPTSQERDQKALELITSFLEKK 291 (336) Q Consensus 253 v~~a~~~g~~lI~Vvl---g~~s~~~R~~~~~~Ll~~~f~~~ 291 (336) ++.|--++-++.++|+ |+... .--.-+++++++.+... T Consensus 575 ~gfaP~d~P~~av~V~ve~gg~G~-~aapi~r~i~~~~l~~~ 615 (619) T PRK10795 575 TAFAPYNNPQVAVAIILENGGAGP-AVGTIMRQILDHIMLGD 615 (619) T ss_pred EEEEECCCCEEEEEEEEECCCCCC-HHHHHHHHHHHHHHCCC T ss_conf 999776898899999997998402-68999999999996489 No 11 >PRK11289 ampC beta-lactamase; Provisional Probab=98.46 E-value=9.3e-05 Score=47.30 Aligned_cols=121 Identities=16% Similarity=0.051 Sum_probs=69.0 Q ss_pred CCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHH------------------ Q ss_conf 888-8138799999999997555898855411153676124544322578856883024578------------------ Q gi|254780698|r 74 PRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA------------------ 134 (336) Q Consensus 74 ~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~~------------------ 134 (336) -++ .||+||.+|+.+++..+++|+++||++|.- +--...++ .-+.+|+++||.- T Consensus 83 T~F~iaSisK~fTa~~~~~Lv~~G~L~ldd~v~~--ylP~~~~~-----~~~~ITi~~Ll~HtsG~~p~~~~~~~~~~~~ 155 (387) T PRK11289 83 TLFELGSVSKTFTATLAAYAQARGELSLSDPASK--YLPELKGS-----PFDGITLLHLATYTAGGLPLQVPDEVKDDAQ 155 (387) T ss_pred CEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCCCCC-----CCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 8785211059999999999997696676672988--48265788-----8788649998754589974348765699999 Q ss_pred ----HHHH----------H-HHHHHHHH---HHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC--------CCC---- Q ss_conf ----8998----------7-77776545---542010057899988876-887266122200245--------433---- Q gi|254780698|r 135 ----LITR----------S-ANDVSTAF---GEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS--------GLH---- 183 (336) Q Consensus 135 ----lli~----------S-~NdAa~al---Ae~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~--------Gl~---- 183 (336) +--. + .|-.-..+ .|.+.| ..|.+.|.++ .+-|||++|.|.-|. |.. T Consensus 156 ~~~~~~~~~~~~~pG~~~~YsN~~~~llg~ive~vsg--~~~~~~l~~~if~PLgM~~T~~~~~~~~~~~~A~Gy~~~~~ 233 (387) T PRK11289 156 LLAYFKAWQPAYAPGTQRLYSNPSIGLLGYLAAKSMG--QPFAQLMEQRLFPPLGLTHTYINVPAAEMADYAQGYNKDGK 233 (387) T ss_pred HHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC T ss_conf 9999984598889998666264899999999999969--89999999856444699776347995673566645356896 Q ss_pred ------------CCCCCCCHHHHHHHHHHHCC Q ss_conf ------------33445301345555542013 Q gi|254780698|r 184 ------------DKNQITTARDQAILGILLRK 203 (336) Q Consensus 184 ------------~~~~~tta~Dla~l~~~~~~ 203 (336) ..+-++|+.||++.++..+. T Consensus 234 p~~~~~~~~~a~AGGl~STa~DL~kwl~a~L~ 265 (387) T PRK11289 234 PVRVNPGVLDAEAYGVKSTAADMLRFVQANLG 265 (387) T ss_pred EEECCCCCCCCCCEEEEECHHHHHHHHHHHCC T ss_conf 22048776667843567789999999998568 No 12 >TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Probab=98.23 E-value=0.00037 Score=43.71 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=73.1 Q ss_pred CCCCEEEEECCCCEEEEEC-------------------------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCC Q ss_conf 7631999998896283113-------------------------------6-9-9888-813879999999999755589 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFK-------------------------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKK 97 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~K-------------------------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~ 97 (336) ...++||||.+||+||.-- | + ...| |.|+=|+.|+..+|| +|. T Consensus 247 ~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~ 323 (592) T TIGR03423 247 RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGV 323 (592) T ss_pred CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCC T ss_conf 73569999668884899961788770230378798899987439665421201122446872689999999997---599 Q ss_pred CCCCCCCCCCHHHHCCCCCCCC--CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 8855411153676124544322--5788-568830245788998777776545542010057899988876887266122 Q gi|254780698|r 98 LHLNTQIPVSKTAATQNPSKLY--LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174 (336) Q Consensus 98 i~~~~~v~is~~a~~~~~s~~~--l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t 174 (336) +++++.+... .....++.... -..| ..++ +...+..|.|...+-+|+.++. +.+-..++++|+... T Consensus 324 i~~~~~~~~~-g~~~~~~~~i~d~~~~~~g~lt----~~~~l~~SsNvg~~~ia~~lg~------~~~~~~~~~fGfg~~ 392 (592) T TIGR03423 324 ITPDTRINCP-GYFQLGGRRFRCWKRGGHGRVD----LRKAIEESCDVYFYQLALRLGI------DKIAEYAKKFGFGQK 392 (592) T ss_pred CCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEC----HHHHHHEEECHHHHHHHHHCCH------HHHHHHHHHCCCCCC T ss_conf 9998589607-8302598523047888863014----5544103833999789886187------889999984678877 Q ss_pred C Q ss_conf 2 Q gi|254780698|r 175 I 175 (336) Q Consensus 175 ~ 175 (336) . T Consensus 393 t 393 (592) T TIGR03423 393 T 393 (592) T ss_pred C T ss_conf 6 No 13 >pfam00144 Beta-lactamase Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. Probab=98.19 E-value=3.4e-05 Score=49.88 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=80.4 Q ss_pred EEEECCCCEEEEECC-------------CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 999988962831136-------------998888-138799999999997555898855411153676124544322578 Q gi|254780698|r 57 IVIDVNKNQMTGFKQ-------------DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122 (336) Q Consensus 57 iv~D~~tG~ILy~Kn-------------~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~ 122 (336) .|.=.+.|+++|++. ++-++. ||+||.+|+.+++..+++|++++|++|.- +--... ... T Consensus 18 ~v~V~~~g~~~~~~~~G~~d~~~~~p~~~dT~f~iaSvsK~~ta~~i~~Lve~G~l~Ld~~v~~--ylP~~~-----~~~ 90 (327) T pfam00144 18 AVAVTRDGKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDPVSK--YLPEFA-----GSG 90 (327) T ss_pred EEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCCC-----CCC T ss_conf 9999999999999868884477798899998587301279999999999997599886643254--286667-----787 Q ss_pred CCEEEEEHHHH--------------------------HHHH------------HHHHHHHHHHH---HHHCCHHHHHHHH Q ss_conf 85688302457--------------------------8899------------87777765455---4201005789998 Q gi|254780698|r 123 KTYFTTEQGIL--------------------------ALIT------------RSANDVSTAFG---EFISGSEKKFAIL 161 (336) Q Consensus 123 g~~~tv~dLl~--------------------------~lli------------~S~NdAa~alA---e~i~Gs~~~Fv~~ 161 (336) .+.+|+++||. .+.- .| |-....|+ |.+.| ..|.+. T Consensus 91 ~~~iTi~~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ys-n~g~~llg~iie~~tg--~~~~~~ 167 (327) T pfam00144 91 KGGVTLRDLLTHTSGLPPLFAPDDLEEAAADAAELVAALAALPPVWPPGTRFGYS-NTAYGLLGELLERVTG--QSYEEL 167 (327) T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEC-CCHHHHHHHHHHHHHC--CCHHHH T ss_conf 6786599994465799976556543234689999999998389868999656636-8069999999999879--789999 Q ss_pred HHHH-HHHHCCCCCCEECCCCCC-------------------------CCCCCCCHHHHHHHHHHHCC Q ss_conf 8876-887266122200245433-------------------------33445301345555542013 Q gi|254780698|r 162 MSNK-AKKIGMQNTIYKNASGLH-------------------------DKNQITTARDQAILGILLRK 203 (336) Q Consensus 162 MN~~-A~~lGl~~t~f~np~Gl~-------------------------~~~~~tta~Dla~l~~~~~~ 203 (336) +.+. .+-|||.+|.|..+.-.. ..+-++|+.||++....+.. T Consensus 168 ~~~~I~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~st~~Dl~kf~~~l~~ 235 (327) T pfam00144 168 LGDRILRPLGMTETELGVPEPGDPRDAAGYTGEGPPVRVSPGPLDAGAYGGLKSTARDLARFLLALLG 235 (327) T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC T ss_conf 99997742499777578982442670451135788754456556777775315679999999999848 No 14 >PRK10662 beta-lactamase/D-alanine carboxypeptidase; Provisional Probab=98.12 E-value=1.2e-05 Score=52.64 Aligned_cols=172 Identities=19% Similarity=0.170 Sum_probs=92.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC--------------------CCCCCEEEEECCCCEEEEEC------------CC Q ss_conf 43588999999999998620310014--------------------87631999998896283113------------69 Q gi|254780698|r 25 QRNIQLMGKILFLSIIMISMASELHA--------------------KPKYSSIVIDVNKNQMTGFK------------QD 72 (336) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~sAiv~D~~tG~ILy~K------------n~ 72 (336) .+++.+...+|..++.+....+.+.. .|..+..|+ +.|+++|.. ++ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iD~~~~~~m~~~~iPG~avavv--~~~~~~~~~yG~ad~~~~~~~t~ 79 (377) T PRK10662 2 KRALLLSAALLAASLTSVAAAQPIADPLLASDIVDRYAQHIFYGSGATGMALVVI--DGNQRVFRSYGETRPGNNVRPQL 79 (377) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEEEEEEEEECCCCCCCCC T ss_conf 1689999999999988504876557802577889999999998579984899999--89999997136643577989999 Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH------------------ Q ss_conf 9888-813879999999999755589885541115367612454432257885688302457------------------ Q gi|254780698|r 73 EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL------------------ 133 (336) Q Consensus 73 ~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~------------------ 133 (336) +-.+ .||+||.+|+.+++..+++|+++||++|.- +... .....-..++.+|+++|+. T Consensus 80 dT~F~IaSiSK~fTa~ai~~Lve~Gkl~lddpv~~--ylP~--~~~~~~~~~~~ITlr~LltHtSGlp~~~~~~~~~~~~ 155 (377) T PRK10662 80 DSVIRIASITKLMTSEVLVKLADDGTVKLTDPLSK--YAPP--GVRVPTYNGTPITLLNLATHTSALPREQPGGPAHRPV 155 (377) T ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCEECCCCHHH--HCCC--CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 98787004319999999999997792206781999--6865--1357867999656999956207898767887323632 Q ss_pred -----------HHHHH----------H-HHH---HHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC------- Q ss_conf -----------88998----------7-777---76545542010057899988876-887266122200245------- Q gi|254780698|r 134 -----------ALITR----------S-AND---VSTAFGEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS------- 180 (336) Q Consensus 134 -----------~lli~----------S-~Nd---Aa~alAe~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~------- 180 (336) .+.-. . .|- .+-.+.|.+.| ..|.+.|.++ -+-|||++|.|.-+. T Consensus 156 ~~~~~~~~~~~~l~~~~~~~~PG~~~~YSN~gy~llg~vie~vsG--~~~~~~~~~~If~PLgM~~T~~~~~~~~~~~~a 233 (377) T PRK10662 156 FVWPTREQRWKWLSTAKLKVAPGTQAAYSNLAFDLLADALANAAG--KPYTQLLEEKITAPLGMKDTTFTPSPDQCKRLM 233 (377) T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC T ss_conf 235899999999843899889997444162889999999999969--899999999734116987665778967751401 Q ss_pred -CC------------CCCCCCCCHHHHHHHHHHHCCC Q ss_conf -43------------3334453013455555420136 Q gi|254780698|r 181 -GL------------HDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 181 -Gl------------~~~~~~tta~Dla~l~~~~~~~ 204 (336) |. +..+-+||+.||++-++..+.. T Consensus 234 ~gy~~~~~~~~~~~~~AGgl~STa~Dmar~~~a~L~~ 270 (377) T PRK10662 234 VGKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQFLSS 270 (377) T ss_pred CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCC T ss_conf 0567778778766677500288899999999998367 No 15 >pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family. Probab=97.93 E-value=0.00011 Score=46.90 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=111.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHC------CHHH Q ss_conf 9999999997555898855411153676124544322578856883024578899877777654554201------0057 Q gi|254780698|r 83 MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------GSEK 156 (336) Q Consensus 83 lMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~------Gs~~ 156 (336) ...+.+.-+.+.+.-+.....+.... .......+..-..-++.++++.|+-.|.|--|..|...++ |+.+ T Consensus 190 ~~~~~~f~~~L~~~Gi~v~~~~~~~~----~~~~~~~l~~~~S~pL~~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~ 265 (383) T pfam02113 190 GYAGAIFAKALALQGITVSGDIGRAG----TPQSARVLAVHQSAPLSDLLKKMMKKSDNLIAESLFREIGVAIKRPGSFE 265 (383) T ss_pred HHHHHHHHHHHHHCCCEEECCEEECC----CCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99999999999976987806354246----89985699999697999999999741856999999999998627998889 Q ss_pred HHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEE---CHHC Q ss_conf 89998887688726612--220024543333445301345555542013620467761156543478699721---0102 Q gi|254780698|r 157 KFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH---NKLL 231 (336) Q Consensus 157 ~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~---N~lL 231 (336) .-...+.+..+++|+.. .++.+.+||... +..|+++|..+.+++... |.+..+.+.-..--...++.++ +++- T Consensus 266 ~g~~~v~~~L~~~gi~~~~~~l~DGSGLSr~-n~is~~~l~~lL~~~~~~-~~~~~~~~sLPvaG~dGTL~~r~~~~~~~ 343 (383) T pfam02113 266 AGADAVRSILSTAGIDTANLVLRDGSGLSRH-NLVTAATLAQLLQAIADQ-PALQALLDSLPVAGESGTLVGGTLRNRFK 343 (383) T ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-CCCCHHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 9999999999974999556478448988733-454999999999999869-43889998398268888555555555445 Q ss_pred C-CCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE Q ss_conf 5-7687005652242333717999999-78979999981 Q gi|254780698|r 232 N-KMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336) Q Consensus 232 ~-~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336) . ...|..=.|||+-+ .-.||.+... ++|++++.++| T Consensus 344 ~~~~~G~v~aKTGTL~-~V~sLaGyv~~~~G~~l~Fsi~ 381 (383) T pfam02113 344 GTPAVGKVRAKTGSLT-GVYSLAGYVTTDSGRKLAFSFI 381 (383) T ss_pred CCCCCCEEEEEEEECC-CCEEEEEEEECCCCCEEEEEEE T ss_conf 7775675999985006-9579479999799899999999 No 16 >COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane] Probab=97.44 E-value=0.0017 Score=39.84 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=90.4 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHH-HHCC--CCCCEECCCCCCCCCCCCCHHHHHH Q ss_conf 88302457889987777765455420100------5789998887688-7266--1222002454333344530134555 Q gi|254780698|r 126 FTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNKAK-KIGM--QNTIYKNASGLHDKNQITTARDQAI 196 (336) Q Consensus 126 ~tv~dLl~~lli~S~NdAa~alAe~i~Gs------~~~Fv~~MN~~A~-~lGl--~~t~f~np~Gl~~~~~~tta~Dla~ 196 (336) .++.++|+-||-.|.|.-|.+|.+.+++. ...-++.|.+.-. +.|. .+....|.+||.- ++.-|++-|.. T Consensus 293 ~PL~~lLk~m~k~SnN~~Ae~L~~~ig~~~~~~gs~~~~~~~v~~~l~~~~GId~~~~vL~DGSGLSr-~Nritpr~l~~ 371 (470) T COG2027 293 APLSQLLKDMNKYSDNLMAEALFRAIGGAIKRPGSVSAAADAVRQILLQRAGIDLAGLVLADGSGLSR-DNRITPRTLVQ 371 (470) T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH-HCCCCHHHHHH T ss_conf 88899999998615089999999984534478742667789999999987398856648741898871-10229899999 Q ss_pred HHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHC-CCCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEECC Q ss_conf 55420136204677611565434786997210102-57687005652242333717999999-7897999998179 Q gi|254780698|r 197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM 270 (336) Q Consensus 197 l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL-~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvlg~ 270 (336) +.+++..+ |....+...--.-....++.|+ +- -.-.|-.=.|||+.. .=+.|.+..+ ++|+++..|++-. T Consensus 372 ~Lq~~~~~-~~~~~~~dsLPIAG~~GTL~~R--~~~~~~~G~v~aKTGTL~-gV~aLaGyv~~~~g~~l~Fai~~N 443 (470) T COG2027 372 LLQAAAQS-PAAAALIDSLPIAGVDGTLRNR--LRGTGAAGKVRAKTGTLT-GVSALAGYVTTASGRKLAFAIILN 443 (470) T ss_pred HHHHHHCC-CHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCEEEEECCCC-CCHHHEEEEECCCCCEEEEEEECC T ss_conf 99998729-7177899847737778750131--446787871788631232-404111068768898899999658 No 17 >PRK09506 mrcB penicillin-binding protein 1b; Reviewed Probab=97.00 E-value=0.024 Score=32.86 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=81.0 Q ss_pred CCEEEEECCCCEEEEE---CC--------C-C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC-CC-CCC Q ss_conf 3199999889628311---36--------9-9-8888138799999999997555898855411153676124-54-432 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF---KQ--------D-E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP-SKL 118 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~---Kn--------~-~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~-~~-s~~ 118 (336) .|.+++|..||+|+.- .+ + + .|.|.|+-|-.+-+.+++. .+...+++.+.-+...... +| ... T Consensus 470 ~A~VviD~~TG~V~AmVGG~d~~~sgfNRA~~A~RQ~GSt~KPfvY~aAL~~--~~~~~~~T~l~D~Pi~~~~~~G~~W~ 547 (839) T PRK09506 470 TAMVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ--PDKYRLNTWIADAPISLRQPNGQVWS 547 (839) T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC--CCCCCCCCEECCCCEEEECCCCCCCC T ss_conf 5799997899859999748887766761345467799765118999999866--79977764524535486468987438 Q ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 25788568830245788998777776545542010057899988876887266122200245433334453013455555 Q gi|254780698|r 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198 (336) Q Consensus 119 ~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~ 198 (336) .-+.+..+.-.-.++-.+..|-|-+++-|+..++-+ ..-..++++|...........+.-...-.|..+|+..- T Consensus 548 P~Nyd~~~~G~VtLr~ALa~S~N~paVrL~~~vGl~------~v~~~~~~lGi~~~~~~~~pSlaLGa~evSplemA~AY 621 (839) T PRK09506 548 PQNDDRRYSGRVMLVDALTRSMNVPTVNLGMALGLP------AVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAF 621 (839) T ss_pred CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHH------HHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHH T ss_conf 864899865712199999858389999999987989------99999998699866688886731077888899999999 Q ss_pred HHH Q ss_conf 420 Q gi|254780698|r 199 ILL 201 (336) Q Consensus 199 ~~~ 201 (336) ..+ T Consensus 622 atf 624 (839) T PRK09506 622 QTI 624 (839) T ss_pred HHH T ss_conf 999 No 18 >PRK13128 D-aminopeptidase; Reviewed Probab=96.95 E-value=0.0058 Score=36.58 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=33.1 Q ss_pred CCCCEEEEECC-------------CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 88962831136-------------99888-8138799999999997555898855411 Q gi|254780698|r 61 VNKNQMTGFKQ-------------DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104 (336) Q Consensus 61 ~~tG~ILy~Kn-------------~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v 104 (336) ...|+|+|+|. ++-++ .||+||.+|+.+++.-.++|++ +|++| T Consensus 30 vkdGkvv~~kgyG~adle~~~Pvt~dT~F~IaSvTK~FTaaail~Lveegkl-LDdpV 86 (518) T PRK13128 30 VKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQFTCAVLLDCIGEPEM-LDAAL 86 (518) T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC-CCCCH T ss_conf 9999999994054442677988999987864313799999999999862986-56637 No 19 >PRK03642 hypothetical protein; Provisional Probab=96.93 E-value=0.0013 Score=40.41 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=39.6 Q ss_pred CEEEEECCCCEEEEECC-C-------------------CCCC-CCHHHHHH-HHHHHHHHHHCCCCCCCCCCCC Q ss_conf 19999988962831136-9-------------------9888-81387999-9999999755589885541115 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQ-D-------------------EPRY-PASLTKMM-TLYIIFEYLQSKKLHLNTQIPV 106 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn-~-------------------~~~~-PASlTKlM-Ta~v~le~i~~g~i~~~~~v~i 106 (336) .+.++=+..|+|+|.|. . +-.+ .||+||++ |+..++.-.++|++.+|++|.- T Consensus 57 G~~v~V~r~Gkiv~~ka~G~~~~~~g~~~~~~~~p~t~dTiF~iAS~TK~~~T~~Alm~LvE~Gkl~LddpV~~ 130 (432) T PRK03642 57 GANLLVIKDNHIVKRKAWGYAKKYDGSTLLAHPIKATTNTMYDLASNTKMYATNFALQKLVSEGKLDVNDLISK 130 (432) T ss_pred CEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH T ss_conf 65999998999999841145433566433346888998867663546099999999999998698774227988 No 20 >PRK11636 mrcA peptidoglycan synthetase; Provisional Probab=96.83 E-value=0.034 Score=32.01 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=78.5 Q ss_pred CCEEEEECCCCEEEEE---C-------C-CC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-HC--CCCCC Q ss_conf 3199999889628311---3-------6-99--8888138799999999997555898855411153676-12--45443 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF---K-------Q-DE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT--QNPSK 117 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~---K-------n-~~--~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a-~~--~~~s~ 117 (336) .|.++||..||+|+.= . | +. .|-|.|.-|-..-..++ ++| +++.+.+.-+... +. .+... T Consensus 427 ~AlV~iDp~tG~V~A~vGG~d~~~s~fNrA~qa~RQpGStfKPfvYaaAl---e~G-~t~~t~v~D~Pi~~~~~~~g~~w 502 (850) T PRK11636 427 SALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAM---DKG-LTLASMLNDVPISRWDAGAGSDW 502 (850) T ss_pred CEEEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHH---HCC-CCCCCEECCCCCEEECCCCCCCC T ss_conf 21798606778346751675642113225443444788651789999999---749-99644505877123027888866 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHH Q ss_conf 22578856883024578899877777654554201005789998887688726612220024543333445301345555 Q gi|254780698|r 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197 (336) Q Consensus 118 ~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l 197 (336) ..-+.+..+.-.--++-.+..|-|-.++-+.+.++-+ ..-+.++.+|+..........+--...-.|..+|+.- T Consensus 503 ~P~N~~~~~~G~vtlr~AL~~S~N~~aVrl~~~vG~~------~~~~~~~~~Gi~~~~~~~~~slaLGs~~vtplema~A 576 (850) T PRK11636 503 RPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVD------YAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARG 576 (850) T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHH------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 7007998838869999999848479999999986969------9999999849985566766320257677679999999 Q ss_pred HH Q ss_conf 54 Q gi|254780698|r 198 GI 199 (336) Q Consensus 198 ~~ 199 (336) -. T Consensus 577 Ya 578 (850) T PRK11636 577 YA 578 (850) T ss_pred HH T ss_conf 99 No 21 >COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] Probab=96.41 E-value=0.031 Score=32.24 Aligned_cols=229 Identities=14% Similarity=0.061 Sum_probs=114.1 Q ss_pred CCCCEEEEECCCCEEEEE-C----CC---------------------CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 763199999889628311-3----69---------------------9888-8138799999999997555898855411 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGF-K----QD---------------------EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI 104 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~-K----n~---------------------~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v 104 (336) ...+++|+|.+||+||.- . |+ ...| |.|+-|.+|+..+|+....+....+..+ T Consensus 266 ~~g~~vv~dp~tGeILAmas~P~ydpn~~~~~~~~~~~~~~~~n~a~~~~yePGStfK~~t~aaaL~~g~~~~~~~~~~~ 345 (599) T COG0768 266 KGGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPITAAAALETGNTGLFDPGSVL 345 (599) T ss_pred CCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE T ss_conf 60489998178884899956899998622332100233420244755170478210899999999976998534898547 Q ss_pred CCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CEECC---C Q ss_conf 1536761245443225788568830245788998777776545542010057899988876887266122-20024---5 Q gi|254780698|r 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT-IYKNA---S 180 (336) Q Consensus 105 ~is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t-~f~np---~ 180 (336) ..........+....-..+. .--+...+..|.|..-.-||..++... +.+.++++|...- .+--| . T Consensus 346 ~~~~~~~~~~~~~~~~~~~~----~~~~~~al~~SsNv~f~~la~~~g~~~------~~~~~~~fGfg~~t~idl~~e~~ 415 (599) T COG0768 346 DGNGPKIRIWGRTGHDYGGR----PLTLTEALQKSSNVGFAKLALRLGPDG------LYDYLKKFGFGQKTGIDLPGETS 415 (599) T ss_pred ECCCCEEEECCCCCCCCCCC----CCCHHHHHHHHCHHHHHHHHHHHCHHH------HHHHHHHCCCCCCCCCCCCCCCC T ss_conf 36986164188156787763----128999988708099999999858588------99999876998755679866425 Q ss_pred CC-CCC-----------------CCCCCHHHHHHHHHHHCCC----CEEEEEEEEEEEE-------EECCEE-------- Q ss_conf 43-333-----------------4453013455555420136----2046776115654-------347869-------- Q gi|254780698|r 181 GL-HDK-----------------NQITTARDQAILGILLRKN----FPQYYKYFSIRKF-------RYRNRI-------- 223 (336) Q Consensus 181 Gl-~~~-----------------~~~tta~Dla~l~~~~~~~----~p~~~~~~s~~~~-------~~~~~~-------- 223 (336) |+ ++. +-..|+--|+.....+..+ .|.+.+-...... ...... T Consensus 416 g~~p~~~~~~~~~~~~~~~siGQ~~~vTPlQla~~~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~~~~~~~is~~~~~~ 495 (599) T COG0768 416 GLLPSREPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVLKKRVISPETAEK 495 (599) T ss_pred CCCCCCHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 65798200136721124404787402089999999999962997942589712446555421246643455589999999 Q ss_pred -------EEEEC----HHCCC-CCCCEEEEECCCCCCCC------------EEEEEEEECCEEEE-EEEECCCC----HH Q ss_conf -------97210----10257-68700565224233371------------79999997897999-99817998----78 Q gi|254780698|r 224 -------ITNHN----KLLNK-MHNIDGIKTGYTRNSGF------------NIVTSLRYKDDPIV-AVVMGMPT----SQ 274 (336) Q Consensus 224 -------~~n~N----~lL~~-~~g~~G~KTG~T~~AG~------------clv~~a~~~g~~lI-~Vvlg~~s----~~ 274 (336) ..+.. .-... -.+-.++|||+...+.. .|++.+-.++-+++ +|++..+. .. T Consensus 496 v~~~m~~Vv~~~~gg~~~~a~v~g~~iaGKTGTAq~~~~~~~~y~~~~~~~~Fvg~aP~d~P~~~v~v~v~~~~~~~g~~ 575 (599) T COG0768 496 VREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGRYHAWFVGFAPADNPKYAVAVLVDNPGGGYGGA 575 (599) T ss_pred HHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCHH T ss_conf 99999987717877641104568952376501150334788863456534899997416899799999997788776235 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 9999999999998401 Q gi|254780698|r 275 ERDQKALELITSFLEK 290 (336) Q Consensus 275 ~R~~~~~~Ll~~~f~~ 290 (336) .--.-++.++++.+.. T Consensus 576 ~aapv~~~I~~~~~~~ 591 (599) T COG0768 576 VAAPVFKKIMERLLDY 591 (599) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 6799999999999997 No 22 >COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane] Probab=96.31 E-value=0.011 Score=34.82 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=57.9 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-----CCCCCCCCCCCCCEEE Q ss_conf 31999998896283113699888-81387999999999975558988554111536761-----2454432257885688 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFT 127 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~-----~~~~s~~~l~~g~~~t 127 (336) .+-.|.+.++|+++|+.|++..+ |||+.||.|++.+++.+-. +-.....-+.. ..+|.......|+..- T Consensus 38 ~~i~v~~~~~~~~~~~~~~~~~~~PASt~kl~T~~aal~~LG~-----~~r~~T~~~~~g~~~g~l~Gnl~~~~~Gdp~l 112 (470) T COG2027 38 VGITVQDLDTGQPAYDYNADTMANPASTQKLLTALAALSVLGP-----DFRFTTELYTSGVKNGVLNGNLYLRGSGDPTL 112 (470) T ss_pred EEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHCCCCCCCCCCCEEEEECCCCCCC T ss_conf 5788754688851110376556788511678899999985185-----41000254116643571043489963688777 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 30245788998777776545542010057899 Q gi|254780698|r 128 TEQGILALITRSANDVSTAFGEFISGSEKKFA 159 (336) Q Consensus 128 v~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv 159 (336) -.+-+..+.-...+---.++..++-.+...|. T Consensus 113 ~~~dl~~l~~~l~~~gv~ai~g~l~lD~s~~~ 144 (470) T COG2027 113 TREDLTKLAPDLKASGVTAITGLLVLDTSVFA 144 (470) T ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEECCEEEC T ss_conf 87888899999986251001145664123332 No 23 >TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic. Probab=96.30 E-value=0.031 Score=32.23 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=104.3 Q ss_pred CCCEEEEECCCCEEEE-------EC------C-CCC--CCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHC--- Q ss_conf 6319999988962831-------13------6-998--8881387999999999975558-9885541115367612--- Q gi|254780698|r 53 KYSSIVIDVNKNQMTG-------FK------Q-DEP--RYPASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAAT--- 112 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy-------~K------n-~~~--~~PASlTKlMTa~v~le~i~~g-~i~~~~~v~is~~a~~--- 112 (336) ..|.++||.+||+|.+ .+ | +++ |-|-|+=|=.+.|.+ +|+.| +.++++.+.-.+..+. T Consensus 368 q~A~V~~D~~TG~v~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~--Ale~G~~~~~~~~~~D~P~~~~~~~ 445 (700) T TIGR02074 368 QAALVAIDPKTGAVRALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAA--ALEKGLKYTPASILDDEPITYSGDP 445 (700) T ss_pred CEEEEEEECCCCEEEEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHH--HHHHHCCCCCCCEEEECCEEECCCC T ss_conf 50068984589768998746123777644642010002686512657999999--9985043470103330334535888 Q ss_pred -CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--C-----EECCCCCCC Q ss_conf -45443225788568830245788998777776545542010057899988876887266122--2-----002454333 Q gi|254780698|r 113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--I-----YKNASGLHD 184 (336) Q Consensus 113 -~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t--~-----f~np~Gl~~ 184 (336) .|+....-+.|..+.=.=.|+-+|..|-|-.|+-|+..+| |.+...+.++++|.+.. . -..+-.|.. T Consensus 446 ~~G~~w~P~Ny~g~y~G~vtl~~ALa~S~N~pAv~l~~~vG-----~~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~ALG~ 520 (700) T TIGR02074 446 GNGGGWEPKNYGGKYRGNVTLRQALAQSINIPAVKLLDEVG-----FLDKVVALAKRFGITSPELPEKTLDPVLSLALGT 520 (700) T ss_pred CCCCCCCEECCCCCEEECCCHHHHHHHCCCHHHHHHHHHHC-----CHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC T ss_conf 98895030006881461332999975122389999998707-----8279999999708878766665888756501066 Q ss_pred CC--CCCCHHHHHHHHH Q ss_conf 34--4530134555554 Q gi|254780698|r 185 KN--QITTARDQAILGI 199 (336) Q Consensus 185 ~~--~~tta~Dla~l~~ 199 (336) -+ .-.|..+||.--. T Consensus 521 ~e~~~Gv~pl~~A~AYa 537 (700) T TIGR02074 521 VESRKGVSPLEMASAYA 537 (700) T ss_pred CCCCCCCCHHHHHHHHH T ss_conf 54344756899998767 No 24 >TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis. Probab=96.23 E-value=0.0031 Score=38.23 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=117.0 Q ss_pred HHHHHHHCCCCCCCCCCC-CCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH Q ss_conf 999975558988554111-53676124544322578856883024578899877777654554201-------0057899 Q gi|254780698|r 88 IIFEYLQSKKLHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-------GSEKKFA 159 (336) Q Consensus 88 v~le~i~~g~i~~~~~v~-is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~-------Gs~~~Fv 159 (336) +.-+.+++--|++...+. .++ ....+.+.|-.-....+.+||.-||-.|.|--|.+|-+.++ +|-+.-+ T Consensus 233 ~~~~~Lk~~GI~~~g~~~r~~~---~~~~~~~PLa~~~S~PL~~Ll~~mmk~SdN~~Ae~l~r~~~~~~~~~~~Sw~~g~ 309 (427) T TIGR00666 233 ILKQKLKQLGITVSGKILRAAQ---APEAGQVPLASHQSAPLIDLLKKMMKKSDNLIAEALFREVAVARIKRPGSWQKGV 309 (427) T ss_pred HHHHHHHHCCCCEEEEEEECCC---CCCCCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 9999999718962136774378---8875656533214886689999986210633378887631543126752078889 Q ss_pred HHHHHHHHHHCC--CCCCEECCCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEEEEEEEEEEEECCEEE-EEE--CHHCCC Q ss_conf 988876887266--1222002454333344530134555554201-3620467761156543478699-721--010257 Q gi|254780698|r 160 ILMSNKAKKIGM--QNTIYKNASGLHDKNQITTARDQAILGILLR-KNFPQYYKYFSIRKFRYRNRII-TNH--NKLLNK 233 (336) Q Consensus 160 ~~MN~~A~~lGl--~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~-~~~p~~~~~~s~~~~~~~~~~~-~n~--N~lL~~ 233 (336) +..+....+.|. .++...+.+||...| .-|+.-|.-+..++. -+.+....+...--.--+..++ ..+ +.+-.. T Consensus 310 ~av~s~L~~~G~d~~~~~L~DGSGLSr~n-lv~p~tl~q~L~~~aGP~~~~~~~~~~~LP~AG~~Gtlv~~Rl~~~~~~~ 388 (427) T TIGR00666 310 EAVKSILQEAGVDTGNVILRDGSGLSRHN-LVTPKTLVQLLQYIAGPDQSAKLAYLDSLPVAGRSGTLVGERLLDGLKDT 388 (427) T ss_pred HHHHHHHHHCCCEECCEEEEECCCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC T ss_conf 99987544404000352787145525445-66499999999985388871135688734446899840478888766177 Q ss_pred -CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE Q ss_conf -687005652242333717999999-78979999981 Q gi|254780698|r 234 -MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336) Q Consensus 234 -~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336) ..|-.-.|||. -.+=++|++.++ +.|+++..|.+ T Consensus 389 p~~GkvrAKTGS-L~gV~sL~G~~t~~~G~~~aF~~~ 424 (427) T TIGR00666 389 PLVGKVRAKTGS-LTGVYSLAGYVTNASGKKLAFSFL 424 (427) T ss_pred CCCCEEEEECCC-CCEEEEEEEEEECCCCCEEEEEEE T ss_conf 987437752233-421323477788368988999888 No 25 >COG1680 AmpC Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms] Probab=95.46 E-value=0.0083 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.4 Q ss_pred CC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 88-813879999999999755589885541115 Q gi|254780698|r 75 RY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 (336) Q Consensus 75 ~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~i 106 (336) .+ .||+||.+|+.+++..+++|++++|++|.. T Consensus 88 ~f~i~S~TK~~ta~~i~~LveeG~l~lddpV~~ 120 (390) T COG1680 88 VFRIASVTKSFTATLLGKLVEEGKLDLDDPVSK 120 (390) T ss_pred EEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 467510179999999999998699761044887 No 26 >COG2602 Beta-lactamase class D [Defense mechanisms] Probab=94.87 E-value=0.27 Score=26.66 Aligned_cols=204 Identities=14% Similarity=0.067 Sum_probs=118.8 Q ss_pred CEEEEEC-CCCEEEEE-CCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 1999998-89628311-3699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 55 SSIVIDV-NKNQMTGF-KQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 55 sAiv~D~-~tG~ILy~-Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) +-+++|. .++.++|. ...++|+ |||+=|+--+|+.++. |.++.++... ....+-...+ +...-+.- T Consensus 31 tfvlyd~~~~~~~i~n~~~~~qr~sPaSTfKI~~sLigld~---Gvl~d~~~~v-----~~wd~~~~~f---~~W~qd~d 99 (254) T COG2602 31 TFVLYDDKAMGYSIYNEERAKQRFSPASTFKIALSLIGLDA---GVLSDEDTPV-----LLWDGKIRWF---ESWNQDQD 99 (254) T ss_pred EEEEEECCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCEE-----EEECCCCCCC---HHHCCCCC T ss_conf 49999754563246333553686684689999999741145---7313587655-----5107775634---11215588 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC-CCCCCCCHHHHHHHHHHHCCC-CEEEE Q ss_conf 5788998777776545542010057899988876887266122200245433-334453013455555420136-20467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKN-FPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~-~~~~~tta~Dla~l~~~~~~~-~p~~~ 209 (336) +...|..|.+-.-..+++.++- +.|-++-++||.-|-....+.|.= ...-.-|+..-....+.+.++ .|.-. T Consensus 100 l~~amk~Svvwy~q~iar~ig~------ek~~aylk~l~YGN~dis~~~~~Wl~~sLkIS~~EQv~fL~rL~~~~LPFs~ 173 (254) T COG2602 100 LTSAMKNSVVWYYQEIARAIGR------EKMAAYLKQLGYGNQDISGNPGFWLESSLKISPKEQVIFLRRLAQNELPFSA 173 (254) T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCCHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCH T ss_conf 8999999878899999998768------9999998875226311058998111366522779999999999746699887 Q ss_pred EEEEEEEEEECCEEEEEECHHCCCC-CCCEEEEECCCCCCC---CEEEEEEEECCEEEEEEEECC----CCHHHHHHHHH Q ss_conf 7611565434786997210102576-870056522423337---179999997897999998179----98789999999 Q gi|254780698|r 210 KYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSG---FNIVTSLRYKDDPIVAVVMGM----PTSQERDQKAL 281 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~n~N~lL~~~-~g~~G~KTG~T~~AG---~clv~~a~~~g~~lI~Vvlg~----~s~~~R~~~~~ 281 (336) +.. .....--++... .+..-+|||+....+ .=+|+.+++++..++...+=. ++...|-.-.. T Consensus 174 ~a~----------~~v~~~m~~~~~~~~~l~GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~nld~~~~~d~~k~~~i~~ 243 (254) T COG2602 174 KAQ----------DLVKAIMILERGPNWELHGKTGTGIVNTKNLGWFVGWVETNENKYVFATNLDIDGNEDGPKREEITE 243 (254) T ss_pred HHH----------HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHH T ss_conf 899----------9998777013089769984044465378875059999996893799999612577775467788999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780698|r 282 ELIT 285 (336) Q Consensus 282 ~Ll~ 285 (336) +.|. T Consensus 244 ~~Lk 247 (254) T COG2602 244 AILK 247 (254) T ss_pred HHHH T ss_conf 9998 No 27 >TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis. Probab=94.65 E-value=0.25 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=32.2 Q ss_pred CCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 9628311369988-881387999999999975558988554111 Q gi|254780698|r 63 KNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105 (336) Q Consensus 63 tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~ 105 (336) +|++||+.+++.+ .|||.-||+||..++-.+.+ +....+.|. T Consensus 1 ~~q~~~~y~~d~~~~PASt~K~lTAaAAL~~Lg~-~frFtT~v~ 43 (427) T TIGR00666 1 TGQPLYQYSGDTFMLPASTQKLLTAAAALLELGP-NFRFTTEVV 43 (427) T ss_pred CCCEEEECCCCEEECCCCCHHHHHHHHHHHHCCC-CCEEEEEEE T ss_conf 9843343068855203246278999999974393-751799997 No 28 >PRK11240 penicillin-binding protein 1C; Provisional Probab=93.83 E-value=0.45 Score=25.30 Aligned_cols=222 Identities=15% Similarity=0.094 Sum_probs=106.7 Q ss_pred CCCEEEEECCCCEEEEE-C--C--C----------C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 63199999889628311-3--6--9----------9-8888138799999999997555898855411153676124544 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF-K--Q--D----------E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~-K--n--~----------~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336) ..+++++|..||+|+.- - + + . .|-|.|+-|-..-.. ++++|.+..++.+.-.... .++ T Consensus 300 ~~A~vviD~~tg~V~A~VG~~d~~~~~~~g~vd~~~A~RqPGStlKPfvYa~---Ale~G~i~p~s~l~D~P~~--~g~- 373 (770) T PRK11240 300 SLAMIVVDHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGL---ALDDGLIHPASLLQDVPRR--TGD- 373 (770) T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HHHCCCCCCCCEECCCCCC--CCC- T ss_conf 6359999789980899983766675444676330203568962388999999---9976999988784168701--488- Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE-ECCCCCC--CCCCCCCHHH Q ss_conf 322578856883024578899877777654554201005789998887688726612220-0245433--3344530134 Q gi|254780698|r 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY-KNASGLH--DKNQITTARD 193 (336) Q Consensus 117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f-~np~Gl~--~~~~~tta~D 193 (336) ...-+-+..+.-.--++-.+..|-|-.|+-+.+.++- +.|.+ .++.+|+....- ..-.||. -.+.-.|..| T Consensus 374 y~P~Nfd~~~~G~vt~r~AL~~SlNipAV~ll~~~G~--~~~~~----~l~~~Gi~~~l~~~~~~~LslaLGg~evtl~e 447 (770) T PRK11240 374 YRPGNFDSGFHGPVSMSEALVRSLNLPAVQVLEAYGP--KRFAA----KLRNVGLPLYLPAGAAPNLSLILGGAGARLED 447 (770) T ss_pred CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCH--HHHHH----HHHHCCCCCCCCCCCCCCCCEECCCCCCCHHH T ss_conf 6870278872061109999986547999999998796--99999----99973997567877789853331576888999 Q ss_pred HHHHHHHHCCC----CEEEEEEEEEEEEE-EC------------CEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEE Q ss_conf 55555420136----20467761156543-47------------869972101025768700565224233371799999 Q gi|254780698|r 194 QAILGILLRKN----FPQYYKYFSIRKFR-YR------------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL 256 (336) Q Consensus 194 la~l~~~~~~~----~p~~~~~~s~~~~~-~~------------~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a 256 (336) |+..-..+... .+.+..-....+.. +. +..-.....-+.. ..-...|||+|.. +-=...+ T Consensus 448 La~aYa~~An~G~~~~~~~~~~~~~~~~~v~s~~aa~~~~~iL~~~~r~~~~~~l~~-~~pvAgKTGTS~g--~RDaWfv 524 (770) T PRK11240 448 MAAAYSAFARHGKAAKLRLQPDDPLLERPLMSPGAAWIIRRIMADEAQPLPDAALPR-VVPLAWKTGTSYG--YRDAWAI 524 (770) T ss_pred HHHHHHHHHCCCEECCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCC-CCCCEECCCCCCC--CCCEEEE T ss_conf 999999997798433517715886332136888889999999875044430110023-7762443467888--7333898 Q ss_pred EECCEEEEEEEECCCCHHHH-----HHHHHHHHHHHHC Q ss_conf 97897999998179987899-----9999999999840 Q gi|254780698|r 257 RYKDDPIVAVVMGMPTSQER-----DQKALELITSFLE 289 (336) Q Consensus 257 ~~~g~~lI~Vvlg~~s~~~R-----~~~~~~Ll~~~f~ 289 (336) =-.++-.++|=+|-++..-+ ...+.-|+...|+ T Consensus 525 G~tp~ytvgVWvGn~Dg~p~~~~~G~~~AaPllf~i~~ 562 (770) T PRK11240 525 GVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNN 562 (770) T ss_pred EECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 63598599999868999938774060235879999999 No 29 >COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane] Probab=91.05 E-value=1.1 Score=23.11 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=80.6 Q ss_pred CCCEEEEECCCCEEEE----------ECC-CC--CCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 6319999988962831----------136-99--888813879999999999755--58988554111536761245443 Q gi|254780698|r 53 KYSSIVIDVNKNQMTG----------FKQ-DE--PRYPASLTKMMTLYIIFEYLQ--SKKLHLNTQIPVSKTAATQNPSK 117 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy----------~Kn-~~--~~~PASlTKlMTa~v~le~i~--~g~i~~~~~v~is~~a~~~~~s~ 117 (336) ..+.+++|..||.|.. +=| +. .|-|.|+-|..+.|.++++-. ...+..|.++++. ...+... T Consensus 327 q~a~v~~d~~tG~V~A~VGg~d~~~~~fNrAt~a~Rq~GSt~KP~~~~~a~~~~~~~~~~~~~d~p~~~~---~~~p~N~ 403 (661) T COG0744 327 QAALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTYG---NWSPKNY 403 (661) T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCEECC---CCCCEEC T ss_conf 3679999668985899976888986653300003678852588999999997389997744526872237---8887466 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHH Q ss_conf 22578856883024578899877777654554201005789998887688726612220024543333445301345555 Q gi|254780698|r 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197 (336) Q Consensus 118 ~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l 197 (336) .+-..|..+++ +-.+..|.|-.++-+...++- +..-+.++++|+....- ...++.....-.|..+|+.. T Consensus 404 ~~~y~~g~vtl----~~ALa~S~Nipav~l~~~vG~------~~~~~~~~~lGi~~~~~-~~~s~~lg~~~~sp~~ma~a 472 (661) T COG0744 404 DGRYEGGSVTL----REALATSLNIPAVRLLQKVGL------DKVVDTAKKLGINSPLV-PGPSLALGASEVSPLEMASA 472 (661) T ss_pred CCCCCCCEECH----HHHHHCCCCHHHHHHHHHHCH------HHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHH T ss_conf 78656852619----999871999999999998674------89999999829988888-86522268888989999998 Q ss_pred HHHH Q ss_conf 5420 Q gi|254780698|r 198 GILL 201 (336) Q Consensus 198 ~~~~ 201 (336) -... T Consensus 473 Y~~f 476 (661) T COG0744 473 YATF 476 (661) T ss_pred HHHH T ss_conf 9999 No 30 >pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family. Probab=89.18 E-value=0.26 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=21.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 813879999999999755589885541115 Q gi|254780698|r 77 PASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 (336) Q Consensus 77 PASlTKlMTa~v~le~i~~g~i~~~~~v~i 106 (336) |||++||+|++.+|+.+.. ...+.+++-. T Consensus 1 PAS~~Kl~TtaaAL~~LG~-d~rf~T~v~~ 29 (383) T pfam02113 1 PASTQKLITAAAALPVLGA-NFRFTTEVAA 29 (383) T ss_pred CCHHHHHHHHHHHHHHCCC-CCEEEEEEEE T ss_conf 9688999999999985399-9759889997 No 31 >KOG4038 consensus Probab=51.43 E-value=11 Score=17.14 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=21.0 Q ss_pred EEEEECCCCEEEEECCCCCCCC-----CHH-HHHHHHHHHHH Q ss_conf 9999988962831136998888-----138-79999999999 Q gi|254780698|r 56 SIVIDVNKNQMTGFKQDEPRYP-----ASL-TKMMTLYIIFE 91 (336) Q Consensus 56 Aiv~D~~tG~ILy~Kn~~~~~P-----ASl-TKlMTa~v~le 91 (336) -++-|++||+|||+.+.+-..| |-+ -|++-+-.+-. T Consensus 20 mnlrdaetgkilwq~ted~s~p~~ehearvpkkilkcravsr 61 (150) T KOG4038 20 MNLRDAETGKILWQETEDFSAPDQEHEARVPKKILKCRAVSR 61 (150) T ss_pred EEEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHH T ss_conf 673025446165402555578860322106588875676664 No 32 >TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex. Probab=51.02 E-value=7.6 Score=17.98 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=28.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCEEE Q ss_conf 99981799878999999999999840-15403432047762001 Q gi|254780698|r 264 VAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRKDNLSS 306 (336) Q Consensus 264 I~Vvlg~~s~~~R~~~~~~Ll~~~f~-~~~~~~~~~~~~~~~~~ 306 (336) ++|+|||.|++.--+++.+.|+. |+ .|..+-...+.+|.... T Consensus 1 V~iIMGS~SD~~~m~~a~~~L~~-fgi~~e~~V~SAHRTP~~~~ 43 (159) T TIGR01162 1 VGIIMGSDSDLETMKKAAEILEE-FGIPYELRVVSAHRTPELMF 43 (159) T ss_pred CEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHH T ss_conf 96853672547899999999985-59966789860677808899 No 33 >TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process. Probab=41.26 E-value=18 Score=15.74 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=41.4 Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHH--HHHHHHHHCCCCCEE Q ss_conf 768700565224233371799999978979999981799878999999--999999840154034 Q gi|254780698|r 233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--LELITSFLEKKTLKH 295 (336) Q Consensus 233 ~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~--~~Ll~~~f~~~~~~~ 295 (336) +.+|+.-==-|--+-|+---..--+-.|.++|+||=|++++=.|..|. +.|+..|.++|-+.. T Consensus 273 n~EgiVaEPAGALSiAAL~~~~r~ei~gKTVVC~vSGGNNDi~R~~Ei~eRsl~y~GLKhYFiv~ 337 (415) T TIGR02079 273 NLEGIVAEPAGALSIAALEELSREEIKGKTVVCVVSGGNNDIERTEEIRERSLLYEGLKHYFIVR 337 (415) T ss_pred HCCCEEEECCHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 16826981513667999875122004697279995277575331367898888731770368752 No 34 >pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins. Probab=38.82 E-value=22 Score=15.25 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=3.9 Q ss_pred HHHHHHHHCCC Q ss_conf 88768872661 Q gi|254780698|r 162 MSNKAKKIGMQ 172 (336) Q Consensus 162 MN~~A~~lGl~ 172 (336) +++.-++-|+. T Consensus 77 V~etfk~nGl~ 87 (215) T pfam05643 77 VEETFKQNGLT 87 (215) T ss_pred HHHHHHHCCCC T ss_conf 99999975999 No 35 >pfam01011 PQQ PQQ enzyme repeat. The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group. Probab=36.96 E-value=27 Score=14.73 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=16.2 Q ss_pred CEEEEECCCCEEEEECCCCCC Q ss_conf 199999889628311369988 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPR 75 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~ 75 (336) .-..+|++||+++++.+.... T Consensus 11 ~l~AlD~~tGk~~W~~~~~~~ 31 (38) T pfam01011 11 RLYALDAKTGKVLWKFKTGGP 31 (38) T ss_pred EEEEEECCCCCEEEEEECCCC T ss_conf 699988778827899975996 No 36 >COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Probab=36.33 E-value=28 Score=14.60 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.4 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 999981799878999999999999 Q gi|254780698|r 263 IVAVVMGMPTSQERDQKALELITS 286 (336) Q Consensus 263 lI~Vvlg~~s~~~R~~~~~~Ll~~ 286 (336) .++|+||++|++.--+++.+.|+. T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~ 27 (162) T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEE 27 (162) T ss_pred EEEEEECCCCHHHHHHHHHHHHHH T ss_conf 189995570239999999999998 No 37 >TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927 This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD.. Probab=34.73 E-value=26 Score=14.85 Aligned_cols=224 Identities=21% Similarity=0.220 Sum_probs=118.6 Q ss_pred CCCEEEEECCCCEEEEE-------------------------------CC-C-CCCC-CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 63199999889628311-------------------------------36-9-9888-8138799999999997555898 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF-------------------------------KQ-D-EPRY-PASLTKMMTLYIIFEYLQSKKL 98 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~-------------------------------Kn-~-~~~~-PASlTKlMTa~v~le~i~~g~i 98 (336) ..++||||.++|+||.= .| . ...| |-|+=||.|+..++++ |-. T Consensus 248 g~~i~vMnpknGeILGM~nrP~ydpn~p~~~s~~~~~kdesa~LQ~~WRN~~v~d~yEPGS~FKiiT~~AA~~e---g~v 324 (660) T TIGR02214 248 GVSIIVMNPKNGEILGMSNRPSYDPNDPRDKSPEVKRKDESAKLQKSWRNRVVSDAYEPGSIFKIITSSAAMEE---GIV 324 (660) T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHC---CCE T ss_conf 58999976999717652067887877743037436054203688650188501122169847799999999732---740 Q ss_pred CCCCCCCCCHHHHCCCCC--CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 855411153676124544--322578856883024578899877777654554201005789998887688726612220 Q gi|254780698|r 99 HLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY 176 (336) Q Consensus 99 ~~~~~v~is~~a~~~~~s--~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f 176 (336) .+++..--..-+..+++. +++=..|+- .+-..-.+-.|=|-+=+-|++.++- +.+|++-+..| | T Consensus 325 ~le~d~FYd~G~~~vg~~~~kCWK~~GHG---~qtF~~vv~NSCN~GF~elG~~LG~------~~L~~Yi~~FG-----F 390 (660) T TIGR02214 325 KLEKDKFYDDGSATVGGKKIKCWKPGGHG---SQTFLEVVQNSCNVGFIELGERLGA------EKLNEYIKKFG-----F 390 (660) T ss_pred ECCCCEEECCCEEEECCCEEEEECCCCCC---CCCHHHHHHCCCCHHHHHHHHHCCH------HHHHHHHHHCC-----C T ss_conf 00365010784144348266767688695---5464787532777789988554076------68999998428-----9 Q ss_pred ECCCCCCCC---------CCCCCHHHHHHHHH----------------------HHCCCCEEEEEEEEEEEEEEC----- Q ss_conf 024543333---------44530134555554----------------------201362046776115654347----- Q gi|254780698|r 177 KNASGLHDK---------NQITTARDQAILGI----------------------LLRKNFPQYYKYFSIRKFRYR----- 220 (336) Q Consensus 177 ~np~Gl~~~---------~~~tta~Dla~l~~----------------------~~~~~~p~~~~~~s~~~~~~~----- 220 (336) -.++|.+-+ -..-.+=|+|.++- .+++ |.+.+-.+....+.+ T Consensus 391 G~~tGIdL~GEA~GIl~n~~~v~pvdlAT~SfGQ~n~v~~iQ~~~A~~AvaNGG~L~~--P~i~~e~~d~~~NG~~~v~~ 468 (660) T TIGR02214 391 GSKTGIDLPGEAAGILKNLEKVGPVDLATISFGQANTVTPIQLMTAVNAVANGGKLIQ--PHIMKEISDKENNGRKVVDK 468 (660) T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCC--HHHHHHHCCCCCCCCEEEEE T ss_conf 8768866677410334137655612254331052000477899999998751665661--33122021757895158875 Q ss_pred ---CEEE------EEECH---HC--------CCCCC----CEEEEECCCCCC-----CC-------EEEEEEE-ECCEEE Q ss_conf ---8699------72101---02--------57687----005652242333-----71-------7999999-789799 Q gi|254780698|r 221 ---NRII------TNHNK---LL--------NKMHN----IDGIKTGYTRNS-----GF-------NIVTSLR-YKDDPI 263 (336) Q Consensus 221 ---~~~~------~n~N~---lL--------~~~~g----~~G~KTG~T~~A-----G~-------clv~~a~-~~g~~l 263 (336) .... ..+.+ .| +..-+ -.|+|||+-.+- || .||+.|= .|-.=. T Consensus 469 ~f~P~~~~~vv~~~~~~~l~~~LE~vVs~GsGk~AfIdGyrvGGKTGTAqKv~P~~G~Y~~g~YivSFvG~APa~dP~v~ 548 (660) T TIGR02214 469 KFEPEVKRKVVDKETTEKLRLALEKVVSKGSGKDAFIDGYRVGGKTGTAQKVKPEDGGYLEGEYIVSFVGFAPADDPEVA 548 (660) T ss_pred EECCCEEEEECCHHHHHHHHHHHHCEEECCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEE T ss_conf 30770123532677899998864114514777561103469577304534447888934148668998642788988479 Q ss_pred EEEEECCCCHHHHHHH------HHHHHHHHHCCCCCEE Q ss_conf 9998179987899999------9999999840154034 Q gi|254780698|r 264 VAVVMGMPTSQERDQK------ALELITSFLEKKTLKH 295 (336) Q Consensus 264 I~Vvlg~~s~~~R~~~------~~~Ll~~~f~~~~~~~ 295 (336) +.|+...|...+.|.- ..++++-.|+....++ T Consensus 549 ~~V~vD~P~~~~~FGG~vAAPv~~~v~~d~l~~lGi~P 586 (660) T TIGR02214 549 VLVVVDNPKGVEQFGGLVAAPVVGEVFNDILNYLGIKP 586 (660) T ss_pred EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHCCCCC T ss_conf 99998679897201344874146889998887557689 No 38 >TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037 The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process. Probab=32.75 E-value=15 Score=16.19 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=75.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHH-HHHHHHCCCCEEEEEEEEEEE------------EEECCE Q ss_conf 7899988876887266122200245433334453013455-555420136204677611565------------434786 Q gi|254780698|r 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRK------------FRYRNR 222 (336) Q Consensus 156 ~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla-~l~~~~~~~~p~~~~~~s~~~------------~~~~~~ 222 (336) .-|.+.+-+..++.|..--.++-|.|-..+. ..+..++. .|.. .+.+.-.-+...=- .-.|++ T Consensus 38 ~~~~~~~~~~~~~~g~~v~~~~~p~GE~~K~-l~~~~~l~~~L~~---~~~~R~~~i~~~GGGvvgDlaGFvAaty~RGi 113 (361) T TIGR01357 38 DLYAEKLLEALQSAGFNVLVLTVPDGEESKS-LETVQRLYDQLLE---AGLDRSSTIIALGGGVVGDLAGFVAATYMRGI 113 (361) T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHH---CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 8888899999985387526887078987454-8889999999996---58895647888545377878999999996155 Q ss_pred EEEEE-CHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 99721-0102576870056522423337179999997897-999998179987899999999999984 Q gi|254780698|r 223 IITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELITSFL 288 (336) Q Consensus 223 ~~~n~-N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg~~s~~~R~~~~~~Ll~~~f 288 (336) .+.+= -.||-..+-.+|+|||---..|-|+|+++-+=.- =+=.-+|-+=.+.+-..-+...+-||| T Consensus 114 ~~iqvPTTLLAmVDsSvGGKtGiN~~~gKNlIGaFy~P~~V~~D~~~L~TLP~~E~~~G~AEviK~g~ 181 (361) T TIGR01357 114 RFIQVPTTLLAMVDSSVGGKTGINFPLGKNLIGAFYQPKAVLIDPDFLKTLPERELRSGMAEVIKHGL 181 (361) T ss_pred CEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHCCCCHHHHHCCCHHHHHHHH T ss_conf 82641404777765303764111378886304211377402650144158846888644357788875 No 39 >COG2066 GlsA Glutaminase [Amino acid transport and metabolism] Probab=32.71 E-value=32 Score=14.24 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=35.3 Q ss_pred CCCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH Q ss_conf 76319999988962831136998888-1387999999999975 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i 93 (336) +..-+|-+=...|+++-+-+.+.++. =|++|+.+..++++.. T Consensus 38 ~~~fgiai~t~dG~~~~aGD~d~~FsiqSISKvf~l~lal~~~ 80 (309) T COG2066 38 PDLFGIAIVTVDGQVYSAGDADERFSIQSISKVFTLALALEDI 80 (309) T ss_pred HHHCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHH T ss_conf 0470699992599599716767614432429999999999866 No 40 >PRK00971 glutaminase; Provisional Probab=30.58 E-value=35 Score=14.03 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=31.3 Q ss_pred CCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH Q ss_conf 319999988962831136998888-1387999999999975 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i 93 (336) .=+|-+=.-.|+++..-+.+.+++ -|++|++|..++++.. T Consensus 39 ~fgiai~t~dG~~~~~GD~~~~FsiQSisK~f~~~lal~~~ 79 (308) T PRK00971 39 KLGIAVCTLDGEIYSAGDADERFSIQSISKVFSLTLALQHY 79 (308) T ss_pred HCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH T ss_conf 74899994599889557878853289889999999999887 No 41 >pfam03413 PepSY Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB. Probab=30.31 E-value=35 Score=14.00 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=9.4 Q ss_pred EEEEECCCCEEEEE Q ss_conf 99999889628311 Q gi|254780698|r 56 SIVIDVNKNQMTGF 69 (336) Q Consensus 56 Aiv~D~~tG~ILy~ 69 (336) -+.+|+.||+||.. T Consensus 45 ~~~VDa~tG~vl~~ 58 (59) T pfam03413 45 EVYIDAYTGEVLKV 58 (59) T ss_pred EEEEECCCCEEEEE T ss_conf 99998998718862 No 42 >pfam04960 Glutaminase Glutaminase. This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2. Probab=28.29 E-value=38 Score=13.79 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.0 Q ss_pred CCCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH Q ss_conf 76319999988962831136998888-1387999999999975 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i 93 (336) |..-+|-+=...|+++..-+.+.+++ -|++|++|..++++.. T Consensus 15 p~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~ 57 (286) T pfam04960 15 PDLLGIAVVTVDGQVHSAGDADEPFSLQSISKVFTLALALGDL 57 (286) T ss_pred HHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH T ss_conf 0783899990799689557889977359999999999999877 No 43 >TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall. Probab=26.70 E-value=41 Score=13.62 Aligned_cols=233 Identities=17% Similarity=0.143 Sum_probs=139.5 Q ss_pred CCEEEEECCCCEEEE---EC-------C-C-CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC- Q ss_conf 319999988962831---13-------6-9-98-888138799999999997555898855411153676124544322- Q gi|254780698|r 54 YSSIVIDVNKNQMTG---FK-------Q-D-EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY- 119 (336) Q Consensus 54 ~sAiv~D~~tG~ILy---~K-------n-~-~~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~- 119 (336) .|.||+|..||||.+ ++ | + +. |..-||.|=.|=+++|..= .+-.+++.|.-.+-+-.......+ T Consensus 414 aAmvv~D~~~GEvrA~vGg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P--~~Y~LnTw~~d~P~~ik~~~G~~W~ 491 (742) T TIGR02071 414 AAMVVVDRFTGEVRALVGGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQP--DKYRLNTWIEDQPLSIKLSNGQVWS 491 (742) T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCCCEEEECCCCCCCC T ss_conf 77889836887078887587887560103641637764324368999972789--7311466423664477568887246 Q ss_pred -CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEE-CCCCCCCCCCCCCHHHHHHH Q ss_conf -5788568830245788998777776545542010057899988876887266122200-24543333445301345555 Q gi|254780698|r 120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK-NASGLHDKNQITTARDQAIL 197 (336) Q Consensus 120 -l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~-np~Gl~~~~~~tta~Dla~l 197 (336) -+...++.=+=+|.-+|+.|=|-+.+.|+-.+|=+ ..-+.-..||..+.... +|+=+- ..---|++++|.+ T Consensus 492 P~N~D~~~~g~V~L~dALa~S~N~pTV~lGm~vGl~------~V~~t~~~LG~~k~~i~~~PsmlL-GA~~ltP~evaq~ 564 (742) T TIGR02071 492 PRNYDRRYSGTVMLYDALARSLNIPTVNLGMKVGLD------KVSQTLKKLGINKDEIPPVPSMLL-GAISLTPYEVAQL 564 (742) T ss_pred CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHCCCCCCCCCCCHHHH-CCCCCCHHHHHHH T ss_conf 514774225626467898765317678864631767------899999982877120476633552-1136687899989 Q ss_pred HHHHCCC---CE-------------EEEEEEEEEEEE--------------ECCEEEEEECHHCC-CCC--CCEEEEECC Q ss_conf 5420136---20-------------467761156543--------------47869972101025-768--700565224 Q gi|254780698|r 198 GILLRKN---FP-------------QYYKYFSIRKFR--------------YRNRIITNHNKLLN-KMH--NIDGIKTGY 244 (336) Q Consensus 198 ~~~~~~~---~p-------------~~~~~~s~~~~~--------------~~~~~~~n~N~lL~-~~~--g~~G~KTG~ 244 (336) -.-+..- -| .+++...+.+-- .......-|-+-|. .++ -...+|||+ T Consensus 565 YQtlAsgG~~~pL~avRSVl~~dG~vLy~~~~~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGT 644 (742) T TIGR02071 565 YQTLASGGERAPLSAVRSVLDEDGKVLYQSLPQAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGT 644 (742) T ss_pred HHHHHCCCCCCCCHHHHHEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC T ss_conf 97762577554310220101147763301788745457742035776777877542012011001004666565456365 Q ss_pred CCCCCCE-EEEEEEECCEEEEEEEECCCC-HHHH---HHHHHHHHHHHHCCCCCEEEEE Q ss_conf 2333717-999999789799999817998-7899---9999999999840154034320 Q gi|254780698|r 245 TRNSGFN-IVTSLRYKDDPIVAVVMGMPT-SQER---DQKALELITSFLEKKTLKHQQT 298 (336) Q Consensus 245 T~~AG~c-lv~~a~~~g~~lI~Vvlg~~s-~~~R---~~~~~~Ll~~~f~~~~~~~~~~ 298 (336) |++..=+ |++ -||..+-+|=+|=++ .+++ -.-|..+..-+|++-.-.+... T Consensus 645 tNd~RDsWF~G---~dG~~~~~~W~GRD~N~~TkLtGAsGAl~vy~~yL~~~~P~~L~l 700 (742) T TIGR02071 645 TNDSRDSWFVG---IDGKEVTIVWLGRDDNGPTKLTGASGALQVYKRYLKYQTPEPLLL 700 (742) T ss_pred CCCCCCEEEEE---ECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 68885104776---438789999985278988476453158999999985258874233 No 44 >pfam05351 GMP_PDE_delta GMP-PDE, delta subunit. GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport. Probab=25.72 E-value=42 Score=13.58 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=13.1 Q ss_pred EEEEECCCCEEEEECCC Q ss_conf 99999889628311369 Q gi|254780698|r 56 SIVIDVNKNQMTGFKQD 72 (336) Q Consensus 56 Aiv~D~~tG~ILy~Kn~ 72 (336) -.+=|++||+|||+-.. T Consensus 14 f~iRD~etG~vlfe~~~ 30 (156) T pfam05351 14 FKIRDAETGKVLFEIAK 30 (156) T ss_pred EEEEECCCCEEEEEECC T ss_conf 99861777818998527 No 45 >COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] Probab=25.45 E-value=25 Score=14.88 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=61.2 Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEEEEEEEEE--------E---EE-ECCEEE Q ss_conf 99988876887266122200245433334453013455555420136-20467761156--------5---43-478699 Q gi|254780698|r 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIR--------K---FR-YRNRII 224 (336) Q Consensus 158 Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~-~p~~~~~~s~~--------~---~~-~~~~~~ 224 (336) +.+......+..|..-.+++-|.|-..++- .+ +..+...++.. .+.---+...= - -+ .|+..+ T Consensus 48 y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl-~~---~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~f 123 (360) T COG0337 48 YLEKLLATLEAAGVEVDSIVLPDGEEYKSL-ET---LEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRF 123 (360) T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCH-HH---HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCE T ss_conf 799999999855860579995798450559-99---99999999975999886799978758777778999999708976 Q ss_pred EE-ECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEE-EECCCCHHHHHHHHHHHHHHHH Q ss_conf 72-1010257687005652242333717999999789799999-8179987899999999999984 Q gi|254780698|r 225 TN-HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV-VMGMPTSQERDQKALELITSFL 288 (336) Q Consensus 225 ~n-~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~V-vlg~~s~~~R~~~~~~Ll~~~f 288 (336) .+ --.||-..+-.+|+|||--...|-|+|+++-+=..=+|-. +|..=...+--.-+...+-|++ T Consensus 124 iqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~ 189 (360) T COG0337 124 IQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGL 189 (360) T ss_pred EECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 755632987762345643453788876226515698679980588641998899876999988764 No 46 >PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Probab=25.33 E-value=42 Score=13.54 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=41.2 Q ss_pred CCEEEEEE-CHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEE-EECCCCHHHHHHHHHHHHHHHH Q ss_conf 78699721-010257687005652242333717999999789799999-8179987899999999999984 Q gi|254780698|r 220 RNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV-VMGMPTSQERDQKALELITSFL 288 (336) Q Consensus 220 ~~~~~~n~-N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~V-vlg~~s~~~R~~~~~~Ll~~~f 288 (336) +++.+.+- -.||...+-.+|+|||.--..|-|+++++..-..-+|-. .|..=...+.-.-...++-+++ T Consensus 262 RGi~~i~iPTTLLa~VDssvGGKtgIN~~~gKNliG~F~~P~~V~iD~~~L~TLp~re~~~G~aEviK~g~ 332 (488) T PRK13951 262 RGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTI 332 (488) T ss_pred CCCCEEECCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEECHHHHCCCCHHHHHCCHHHHHHHHH T ss_conf 49987875405998776302566057689984658987698367870777656999999747999998664 No 47 >COG3212 Predicted membrane protein [Function unknown] Probab=24.62 E-value=44 Score=13.45 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=15.0 Q ss_pred EEEEECCCCEEEEECCCC----CC---CCCHHHHHHHHHH Q ss_conf 999998896283113699----88---8813879999999 Q gi|254780698|r 56 SIVIDVNKNQMTGFKQDE----PR---YPASLTKMMTLYI 88 (336) Q Consensus 56 Aiv~D~~tG~ILy~Kn~~----~~---~PASlTKlMTa~v 88 (336) -+-.|.+++++....++. .. .|=|..+.+..-+ T Consensus 54 e~~~d~~~~d~~~~~~~~~~~~~~~~~~iis~~ea~~iAl 93 (144) T COG3212 54 EVEADSDGDDDDMDQDAKTKEVQKGESTIISLEEAKEIAL 93 (144) T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 2355257832545436765544058764469999999999 No 48 >TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process. Probab=22.44 E-value=17 Score=15.83 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=32.1 Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC Q ss_conf 5788568830245788998777776545542010057899988876887266 Q gi|254780698|r 120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171 (336) Q Consensus 120 l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl 171 (336) +-.|.-+||+|.+.+.--.||.+-.+-++..-.|+...++.--.+--++||. T Consensus 265 lG~G~G~SV~EVi~a~~~vsG~~~~~~~~~RR~GDpa~l~Ada~ki~~~LgW 316 (341) T TIGR01179 265 LGYGQGFSVLEVIEAFKKVSGKDIPVELAPRRPGDPASLVADASKIRRELGW 316 (341) T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEECCHHHHHHHCCC T ss_conf 2467541099999998661098137887687798845487386999975385 No 49 >COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only] Probab=21.78 E-value=50 Score=13.10 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHHHHHCCC Q ss_conf 8899999999999862031 Q gi|254780698|r 28 IQLMGKILFLSIIMISMAS 46 (336) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (336) .+....++++.++....++ T Consensus 4 ~k~~~~il~~al~l~GCs~ 22 (200) T COG3417 4 MKIYASILLLALFLSGCSS 22 (200) T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 7999999999999841136 No 50 >TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm. Probab=20.92 E-value=49 Score=13.17 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=47.4 Q ss_pred HHHHCC---CCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEE-------ECHHC---- Q ss_conf 887266---1222002454333344530134555554201362046776115654347869972-------10102---- Q gi|254780698|r 166 AKKIGM---QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-------HNKLL---- 231 (336) Q Consensus 166 A~~lGl---~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n-------~N~lL---- 231 (336) .-.||| .|+=|-...|.|-..-=-++..+|-+.+-. ..+-+...++.-+.++...+.. |=-++ T Consensus 77 tLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k---~~EnL~nl~t~~yDiNaa~~~e~YDFI~sTVVf~FL~a 153 (239) T TIGR00477 77 TLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIK---EKENLDNLRTDVYDINAAALDEDYDFILSTVVFMFLEA 153 (239) T ss_pred EEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCC T ss_conf 532688885378999761684101216866887599888---76267110046554335540127874210201221058 Q ss_pred CCCCCCEEEEECCCCCCCCEEEEEEE-ECCEE Q ss_conf 57687005652242333717999999-78979 Q gi|254780698|r 232 NKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDP 262 (336) Q Consensus 232 ~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~ 262 (336) .+.|+++-=---+|...|||||.+|= -++-+ T Consensus 154 ~rvP~iIanMq~hT~pGGYNLIVaAMdTaDyP 185 (239) T TIGR00477 154 ERVPEIIANMQEHTKPGGYNLIVAAMDTADYP 185 (239) T ss_pred CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC T ss_conf 87726788658746798732223321578888 No 51 >pfam03482 SIC sic protein. Serotype M1 group A Streptococcus strains cause epidemic waves of human infections. This family includes the sic protein an extracellular protein (streptococcal inhibitor of complement) that inhibits human complement. Probab=20.08 E-value=56 Score=12.83 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=24.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 12343588999999999998620310014876 Q gi|254780698|r 22 IYIQRNIQLMGKILFLSIIMISMASELHAKPK 53 (336) Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (336) +.|+..|+.-+.+||.++..+++..+.+.+.+ T Consensus 1 MkIRNKI~nSktLLFTSLvAVALLGATQPvSA 32 (306) T pfam03482 1 MNIRNKIENSKTLLFTSLVAVALLGATQPVSA 32 (306) T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCH T ss_conf 94443100112567899999998447776524 Done!