Query         gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 336
No_of_seqs    248 out of 3383
Neff          7.2 
Searched_HMMs 39220
Date          Sun May 29 20:16:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780698.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11397 dacD D-alanyl-D-alani 100.0       0       0  556.4  27.6  279   22-300     1-293 (390)
  2 PRK10793 D-alanyl-D-alanine ca 100.0       0       0  547.6  28.4  278   21-298     3-299 (403)
  3 PRK10001 D-alanyl-D-alanine ca 100.0       0       0  548.0  26.7  250   49-298    35-292 (400)
  4 COG1686 DacC D-alanyl-D-alanin 100.0       0       0  546.7  22.2  251   49-299    34-289 (389)
  5 PRK11669 pbpG D-alanyl-D-alani 100.0       0       0  477.4  22.1  231   52-288    39-278 (308)
  6 pfam00768 Peptidase_S11 D-alan 100.0       0       0  468.8  21.4  226   47-272     6-241 (241)
  7 COG2367 PenP Beta-lactamase cl  99.4   5E-12 1.3E-16   90.7  10.2  213   53-272    64-299 (329)
  8 PRK11113 D-alanyl-D-alanine ca  99.2 1.9E-10   5E-15   81.2   8.5  139  127-268   294-444 (477)
  9 pfam00905 Transpeptidase Penic  98.6 6.7E-06 1.7E-10   54.1  16.5  206   55-271     2-276 (296)
 10 PRK10795 penicillin-binding pr  98.6 1.4E-05 3.6E-10   52.2  16.9  225   52-291   269-615 (619)
 11 PRK11289 ampC beta-lactamase;   98.5 9.3E-05 2.4E-09   47.3  18.2  121   74-203    83-265 (387)
 12 TIGR03423 pbp2_mrdA penicillin  98.2 0.00037 9.4E-09   43.7  19.3  110   52-175   247-393 (592)
 13 pfam00144 Beta-lactamase Beta-  98.2 3.4E-05 8.7E-10   49.9  10.8  137   57-203    18-235 (327)
 14 PRK10662 beta-lactamase/D-alan  98.1 1.2E-05   3E-10   52.6   7.3  172   25-204     2-270 (377)
 15 pfam02113 Peptidase_S13 D-Ala-  97.9 0.00011 2.8E-09   46.9   9.2  179   83-268   190-381 (383)
 16 COG2027 DacB D-alanyl-D-alanin  97.4  0.0017 4.2E-08   39.8   9.2  140  126-270   293-443 (470)
 17 PRK09506 mrcB penicillin-bindi  97.0   0.024 6.2E-07   32.9  16.9  140   54-201   470-624 (839)
 18 PRK13128 D-aminopeptidase; Rev  97.0  0.0058 1.5E-07   36.6   7.9   43   61-104    30-86  (518)
 19 PRK03642 hypothetical protein;  96.9  0.0013 3.4E-08   40.4   4.5   52   55-106    57-130 (432)
 20 PRK11636 mrcA peptidoglycan sy  96.8   0.034 8.7E-07   32.0  13.2  136   54-199   427-578 (850)
 21 COG0768 FtsI Cell division pro  96.4   0.031 7.9E-07   32.2   8.5  229   52-290   266-591 (599)
 22 COG2027 DacB D-alanyl-D-alanin  96.3   0.011 2.9E-07   34.8   5.8  101   54-159    38-144 (470)
 23 TIGR02074 PBP_1a_fam penicilli  96.3   0.031 7.9E-07   32.2   8.0  140   53-199   368-537 (700)
 24 TIGR00666 PBP4 D-alanyl-D-alan  96.2  0.0031 7.8E-08   38.2   2.5  176   88-268   233-424 (427)
 25 COG1680 AmpC Beta-lactamase cl  95.5  0.0083 2.1E-07   35.7   2.1   32   75-106    88-120 (390)
 26 COG2602 Beta-lactamase class D  94.9    0.27 6.8E-06   26.7  12.4  204   55-285    31-247 (254)
 27 TIGR00666 PBP4 D-alanyl-D-alan  94.6    0.25 6.3E-06   26.9   7.7   42   63-105     1-43  (427)
 28 PRK11240 penicillin-binding pr  93.8    0.45 1.2E-05   25.3  13.3  222   53-289   300-562 (770)
 29 COG0744 MrcB Membrane carboxyp  91.0     1.1 2.7E-05   23.1   8.5  135   53-201   327-476 (661)
 30 pfam02113 Peptidase_S13 D-Ala-  89.2    0.26 6.7E-06   26.7   2.2   29   77-106     1-29  (383)
 31 KOG4038 consensus               51.4      11 0.00027   17.1   2.0   36   56-91     20-61  (150)
 32 TIGR01162 purE phosphoribosyla  51.0     7.6 0.00019   18.0   1.3   42  264-306     1-43  (159)
 33 TIGR02079 THD1 threonine dehyd  41.3      18 0.00046   15.7   2.0   63  233-295   273-337 (415)
 34 pfam05643 DUF799 Putative bact  38.8      22 0.00056   15.2   2.1   11  162-172    77-87  (215)
 35 pfam01011 PQQ PQQ enzyme repea  37.0      27 0.00068   14.7   2.3   21   55-75     11-31  (38)
 36 COG0041 PurE Phosphoribosylcar  36.3      28 0.00072   14.6   3.8   24  263-286     4-27  (162)
 37 TIGR02214 spoVD_pbp stage V sp  34.7      26 0.00065   14.8   1.9  224   53-295   248-586 (660)
 38 TIGR01357 aroB 3-dehydroquinat  32.7      15 0.00039   16.2   0.5  129  156-288    38-181 (361)
 39 COG2066 GlsA Glutaminase [Amin  32.7      32 0.00082   14.2   4.3   42   52-93     38-80  (309)
 40 PRK00971 glutaminase; Provisio  30.6      35 0.00089   14.0   4.6   40   54-93     39-79  (308)
 41 pfam03413 PepSY Peptidase prop  30.3      35  0.0009   14.0   2.1   14   56-69     45-58  (59)
 42 pfam04960 Glutaminase Glutamin  28.3      38 0.00098   13.8   4.6   42   52-93     15-57  (286)
 43 TIGR02071 PBP_1b penicillin-bi  26.7      41   0.001   13.6   7.5  233   54-298   414-700 (742)
 44 pfam05351 GMP_PDE_delta GMP-PD  25.7      42  0.0011   13.6   1.7   17   56-72     14-30  (156)
 45 COG0337 AroB 3-dehydroquinate   25.4      25 0.00064   14.9   0.5  127  158-288    48-189 (360)
 46 PRK13951 bifunctional shikimat  25.3      42  0.0011   13.5   1.7   69  220-288   262-332 (488)
 47 COG3212 Predicted membrane pro  24.6      44  0.0011   13.5   1.6   33   56-88     54-93  (144)
 48 TIGR01179 galE UDP-glucose 4-e  22.4      17 0.00045   15.8  -0.8   52  120-171   265-316 (341)
 49 COG3417 FlgN Collagen-binding   21.8      50  0.0013   13.1   1.5   19   28-46      4-22  (200)
 50 TIGR00477 tehB tellurite resis  20.9      49  0.0012   13.2   1.3   94  166-262    77-185 (239)
 51 pfam03482 SIC sic protein. Ser  20.1      56  0.0014   12.8   1.8   32   22-53      1-32  (306)

No 1  
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=100.00  E-value=0  Score=556.45  Aligned_cols=279  Identities=25%  Similarity=0.397  Sum_probs=249.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             123435889999999999986203100------148763199999889628311369988-8813879999999999755
Q gi|254780698|r   22 IYIQRNIQLMGKILFLSIIMISMASEL------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQ   94 (336)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~   94 (336)
                      ++++|++.+...++.+++.......+.      +...+.||||||++||+|||+||+|++ +|||+|||||+|+++|+++
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~i~A~sailiD~~TG~vLy~kN~d~~~~pAS~TKlMT~~v~~e~i~   80 (390)
T PRK11397          1 MLLKRRLIIAASLFVFNLSSAFAAENIPFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAID   80 (390)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             94378999999999999999874045778999996553399999999996920129299848779999999999999997


Q ss_pred             CCCCCCCCCCCCCHHHHC------CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             589885541115367612------45443225788568830245788998777776545542010057899988876887
Q gi|254780698|r   95 SKKLHLNTQIPVSKTAAT------QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKK  168 (336)
Q Consensus        95 ~g~i~~~~~v~is~~a~~------~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~  168 (336)
                      +|+++|++++++|+++|.      .++|.+++++|+++|++|||+|+|+.||||||++|||+++|++++|+++||++|++
T Consensus        81 ~g~l~~d~~v~vs~~a~~~~~~~~~g~s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~  160 (390)
T PRK11397         81 SHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEK  160 (390)
T ss_pred             CCCCCCCCEEEECHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             39999786599638787414876578722421589899999999998874423999999975279999999999999998


Q ss_pred             HCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC-CCCCCEEEEECCCCC
Q ss_conf             2661222002454333344530134555554201362046776115654347869972101025-768700565224233
Q gi|254780698|r  169 IGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRN  247 (336)
Q Consensus       169 lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~-~~~g~~G~KTG~T~~  247 (336)
                      |||+||||.||+||++++|+|||+||++|++++++++|++++++++++++|+++++.|+|.||+ ++.++||+|||||++
T Consensus       161 lG~~nT~F~np~GL~~~~~~tTA~Dla~la~~~i~~~P~~~~~~~~~~~~~~~~~~~n~N~ll~~~~~~vdGlKTG~T~~  240 (390)
T PRK11397        161 LHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG  240 (390)
T ss_pred             HCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCEEEEEEECCEECCCCCCCHHCCCCCCCEEEECCCHH
T ss_conf             58987468544346788888899999999999741485563012167887789632775631012466711112046744


Q ss_pred             CCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             37179999997897999998179987899999999999984015403432047
Q gi|254780698|r  248 SGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR  300 (336)
Q Consensus       248 AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f~~~~~~~~~~~~  300 (336)
                      ||+|||++++|||+|+|+||||+++.+.|+.++++|+||||++|..+......
T Consensus       241 AG~~lv~ta~~~g~rlI~Vvlg~~~~~~r~~~~~~Ll~ygf~~f~~~~l~~~~  293 (390)
T PRK11397        241 AGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRWGQQNFTTVQILHRG  293 (390)
T ss_pred             HHCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCEEEEEECCC
T ss_conf             20817625323983999999589981058999999999998644799960489


No 2  
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=100.00  E-value=0  Score=547.56  Aligned_cols=278  Identities=27%  Similarity=0.381  Sum_probs=250.7

Q ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHCCCCC----------CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHH
Q ss_conf             51234358899999-99999986203100----------148763199999889628311369988-8813879999999
Q gi|254780698|r   21 SIYIQRNIQLMGKI-LFLSIIMISMASEL----------HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYI   88 (336)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v   88 (336)
                      .|++.|.+..+.+. ++|..+..+..++.          +...+.||||||++||+|||+||+|++ +|||+|||||+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~i~A~sailiD~~TG~VLy~kNad~~~~pAS~TKlMT~~l   82 (403)
T PRK10793          3 TIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYV   82 (403)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             46428899999999999999876542110014563799897554199999999994913109499958779999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHCC------CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             9997555898855411153676124------5443225788568830245788998777776545542010057899988
Q gi|254780698|r   89 IFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM  162 (336)
Q Consensus        89 ~le~i~~g~i~~~~~v~is~~a~~~------~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~M  162 (336)
                      ++|++++|+++|+++|++|+++|..      ++|.+++++|+.+|++|||+|+|+.||||||++|||+++||+++|+++|
T Consensus        83 v~eai~~g~l~~~d~v~vs~~a~~~~~~~~~g~s~~~l~~G~~~tv~dLl~gl~i~SaNDAa~aLAe~i~Gs~~~Fv~~M  162 (403)
T PRK10793         83 IGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLM  162 (403)
T ss_pred             HHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999759999888599658998514876678742541589899999999975652435999999975069899999999


Q ss_pred             HHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEE
Q ss_conf             87688726612220024543333445301345555542013620467761156543478699721010257-68700565
Q gi|254780698|r  163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIK  241 (336)
Q Consensus       163 N~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~K  241 (336)
                      |++|++|||+||||+||+||++++|+|||+||++|++++++++|+++.+++.+.++++++.+.|+|.||+. +.|+||+|
T Consensus       163 N~kA~eLG~~nT~F~np~GL~~~~~~tTA~Dla~la~~l~~~~p~~~~~~~~~~~~~~~~~~~n~N~lL~~~~~~vdGlK  242 (403)
T PRK10793        163 NSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIK  242 (403)
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCEEEECCCHHHHCCCCCCCCEE
T ss_conf             99999858987454478777676765588999999999987484124787778998789886321266444677853100


Q ss_pred             ECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             224233371799999978979999981799878999999999999840154034320
Q gi|254780698|r  242 TGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQT  298 (336)
Q Consensus       242 TG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f~~~~~~~~~~  298 (336)
                      ||||++||+|||++++|||+|+|+||||+++.+.|+.|+++|+||||++|.......
T Consensus       243 TG~T~~AG~~lv~sa~r~g~rlI~Vvlg~~s~~~R~~d~~~Ll~ygf~~f~~~~~~~  299 (403)
T PRK10793        243 TGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVNPLK  299 (403)
T ss_pred             CCCCCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf             244455770678999858969999992899810789999999999987338986226


No 3  
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=100.00  E-value=0  Score=547.96  Aligned_cols=250  Identities=29%  Similarity=0.421  Sum_probs=236.4

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC------CCCCCCCC
Q ss_conf             148763199999889628311369988-88138799999999997555898855411153676124------54432257
Q gi|254780698|r   49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ------NPSKLYLK  121 (336)
Q Consensus        49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~------~~s~~~l~  121 (336)
                      +...+.||||||++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++|++|+++|..      ++|.++++
T Consensus        35 P~i~A~sail~D~~TG~VLy~Kn~d~~~~pAS~TKlMTa~lv~eai~~g~i~ld~~v~vs~~a~~~~~~~~~g~S~~~l~  114 (400)
T PRK10001         35 PSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLK  114 (400)
T ss_pred             CCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEEEEC
T ss_conf             97453189999999995945309399848779999999999999986599987864772489985247655687424423


Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88568830245788998777776545542010057899988876887266122200245433334453013455555420
Q gi|254780698|r  122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL  201 (336)
Q Consensus       122 ~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~  201 (336)
                      +|++++|+|||+++|+.||||||++|||+++|++++|+++||++|++|||+||||.||+||++++|++||+||++|++++
T Consensus       115 ~g~~~tv~dLL~~lli~SaNDAA~aLAe~i~Gs~~~Fv~~MN~kA~~LG~~nT~F~np~GL~~~~~~sTA~Dla~la~~l  194 (400)
T PRK10001        115 PGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKAL  194 (400)
T ss_pred             CCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             79898999999998774425999999972355689999999999998289875435664366754445599999999988


Q ss_pred             CCCCEEEEEEEEEEEEEECCEEEEEECHHCCCC-CCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHH
Q ss_conf             136204677611565434786997210102576-8700565224233371799999978979999981799878999999
Q gi|254780698|r  202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA  280 (336)
Q Consensus       202 ~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~~-~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~  280 (336)
                      +.++|+++.++++++++++++.+.|+|+||+.. .|+||+|||||++||||||++++|||+|+|+||||+++.+.||.|+
T Consensus       195 ~~~~p~~~~~~~~~~~t~~~~~~~N~N~lL~~~~~~vdGlKTG~t~~AG~~lv~ta~r~g~rlI~VVlga~s~~~R~~dt  274 (400)
T PRK10001        195 IHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNES  274 (400)
T ss_pred             HCCCCHHEEEEEEEEEEECCEEEECCCCCCCCCCCCCEEEEECCCHHCCCCHHHEEECCCCEEEEEEECCCCCCHHHHHH
T ss_conf             60683413753478998788897221431126777850376133432377143244338958999994899920799999


Q ss_pred             HHHHHHHHCCCCCEEEEE
Q ss_conf             999999840154034320
Q gi|254780698|r  281 LELITSFLEKKTLKHQQT  298 (336)
Q Consensus       281 ~~Ll~~~f~~~~~~~~~~  298 (336)
                      ++||||||++|.......
T Consensus       275 ~~Ll~ygf~~f~~~~~~~  292 (400)
T PRK10001        275 EKLLTWGFRFFETVTPIK  292 (400)
T ss_pred             HHHHHHHHHHCEEEEEEC
T ss_conf             999999986168887504


No 4  
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=546.68  Aligned_cols=251  Identities=33%  Similarity=0.522  Sum_probs=240.2

Q ss_pred             CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCEE
Q ss_conf             148763199999889628311369988-881387999999999975558988554111536761245-443225788568
Q gi|254780698|r   49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYF  126 (336)
Q Consensus        49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~-~s~~~l~~g~~~  126 (336)
                      +..++.+|||||++||+|||+||+|.+ +|||||||||+||++|++++|+++|+++|++|+++|..+ +|.+++++|+.+
T Consensus        34 ~~~~a~~aiviD~~sGkVLy~kn~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~~S~~~l~~G~~~  113 (389)
T COG1686          34 PEIAAKAAIVIDADSGKVLYSKNADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGGGSKMFLKPGETV  113 (389)
T ss_pred             CCCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCCEECCCCEE
T ss_conf             67666438999889984721328898878509999999999998764268884553335675663178765113469887


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             83024578899877777654554201005789998887688726612220024543333445301345555542013620
Q gi|254780698|r  127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP  206 (336)
Q Consensus       127 tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p  206 (336)
                      +++|||+++++.|+||||++|||+++|++++|+++||++|++|||+||||+|||||++++|++||+||++|++++++++|
T Consensus       114 tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~~~~tTArDla~l~~~l~~~~P  193 (389)
T COG1686         114 TVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNPGQVTTARDLALLARALIRDYP  193 (389)
T ss_pred             EHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             89999999887445499999998717989999999999999858988876188788988874669899999999988483


Q ss_pred             EEEEEEEEEEEEE--CCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             4677611565434--78699721010257-68700565224233371799999978979999981799878999999999
Q gi|254780698|r  207 QYYKYFSIRKFRY--RNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL  283 (336)
Q Consensus       207 ~~~~~~s~~~~~~--~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~L  283 (336)
                      ++++++++++++|  +++.++|+|.+++. |+|+||+|||||++||||||+++++||||+|+||||+++...||.|+.+|
T Consensus       194 ~~~~~~s~~~~~~~~~~~~~~n~N~l~~~~~~g~dG~KTGyT~~AG~nlv~sa~~~grrli~Vvlg~~~~~~R~~~~~~L  273 (389)
T COG1686         194 EIYEISSTKSFTFPANKITQRNRNLLLWRKYPGVDGLKTGYTDEAGYNLVGSAKRNGRRLIAVVLGADSAKTRFEDAAKL  273 (389)
T ss_pred             HHHHHCCEEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             65311412478871584011221302105788976302432456673179886338928999981899730069999999


Q ss_pred             HHHHHCCCCCEEEEEC
Q ss_conf             9998401540343204
Q gi|254780698|r  284 ITSFLEKKTLKHQQTH  299 (336)
Q Consensus       284 l~~~f~~~~~~~~~~~  299 (336)
                      ++|+|+.+........
T Consensus       274 l~~~f~~~~~~~~~~~  289 (389)
T COG1686         274 LDWGFTNFETRKILKK  289 (389)
T ss_pred             HHHHHHCCCCCCCCCC
T ss_conf             9987410333444445


No 5  
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=100.00  E-value=0  Score=477.40  Aligned_cols=231  Identities=26%  Similarity=0.326  Sum_probs=208.6

Q ss_pred             CCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             763199999889628311369988-88138799999999997555898855411153-6761245443225788568830
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS-KTAATQNPSKLYLKEKTYFTTE  129 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is-~~a~~~~~s~~~l~~g~~~tv~  129 (336)
                      .+.||||||++||+|||+||+|++ +|||+|||||+|+++|+    ++.+|++++++ ......+++..+++.|++++++
T Consensus        39 ~A~sail~D~~TG~VLy~kn~d~~~~pAS~TKlMTalv~le~----~~~ld~~v~v~~~~~~~~~~~~s~l~~G~~~tv~  114 (308)
T PRK11669         39 ASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDA----KLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRK  114 (308)
T ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC----CCCCCCEEEEEHHHHHHCCCCCCCCCCCCEEEHH
T ss_conf             540899999999969001582998487899999999999817----8998876997677620006874433479888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             24578899877777654554201005789998887688726612220024543333445301345555542013620467
Q gi|254780698|r  130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY  209 (336)
Q Consensus       130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~  209 (336)
                      |||+++|+.|+||||++|||+++|++++|+++||++|++|||+||||+||+||+ ++|+|||+||++|++++ .+||.|.
T Consensus       115 dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~np~GL~-~~n~sTA~DLA~L~~~a-~~~P~~~  192 (308)
T PRK11669        115 DMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVEPTGLS-VHNVSTARDLTKLLIAS-KQYPLIG  192 (308)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCC-CCCEECHHHHHHHHHHH-HHCCHHH
T ss_conf             999999874652999999997076799999999999998299988886899989-88803899999999999-8596122


Q ss_pred             EEEEEEEEE--ECC----EEEEEECHHCCCCC-CCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHH
Q ss_conf             761156543--478----69972101025768-70056522423337179999997897999998179987899999999
Q gi|254780698|r  210 KYFSIRKFR--YRN----RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE  282 (336)
Q Consensus       210 ~~~s~~~~~--~~~----~~~~n~N~lL~~~~-g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~  282 (336)
                      ++..+++++  ++.    +.+.|+|+||+.++ +++|+|||||++||||||++++|||||+|+||||++++..||.|+.+
T Consensus       193 ~~~~t~~~~~~~~~~~~~~~~~NtN~LL~~~~~~i~g~KTG~T~~AG~clV~tA~r~grrlI~VVL~a~gk~~~f~da~r  272 (308)
T PRK11669        193 QLSTTREKTVTFRKPNYTLPFRNTNHLVYKDNWNIQLTKTGFTNAAGHCLVMRTVINNRPVALVVLDAFGKYTHFADASR  272 (308)
T ss_pred             EEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCHHHHHH
T ss_conf             04346679998367751531233460213578895707646664357766899999997999999289998663899999


Q ss_pred             HHHHHH
Q ss_conf             999984
Q gi|254780698|r  283 LITSFL  288 (336)
Q Consensus       283 Ll~~~f  288 (336)
                      |++|--
T Consensus       273 l~~w~~  278 (308)
T PRK11669        273 LRTWIE  278 (308)
T ss_pred             HHHHHH
T ss_conf             999998


No 6  
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=100.00  E-value=0  Score=468.82  Aligned_cols=226  Identities=31%  Similarity=0.463  Sum_probs=211.1

Q ss_pred             CCCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC----CCCCCCCCC
Q ss_conf             00148763199999889628311369988-8813879999999999755589885541115367612----454432257
Q gi|254780698|r   47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----QNPSKLYLK  121 (336)
Q Consensus        47 ~~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~----~~~s~~~l~  121 (336)
                      +++...+.||||+|++||+|||+||++++ +|||+|||||+|+++|++++++++++++|++++.++.    .+++.++++
T Consensus         6 ~~P~i~A~saiv~D~~tg~iL~~kn~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~~~l~   85 (241)
T pfam00768         6 SAPEIAAKSAILVDYNTGKVLYEKNADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSNMFLK   85 (241)
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCEEEEC
T ss_conf             99856512999999999979000690998177899999999999997562898854442101889986378887346534


Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88568830245788998777776545542010057899988876887266122200245433334453013455555420
Q gi|254780698|r  122 EKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILL  201 (336)
Q Consensus       122 ~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~  201 (336)
                      +|+.++++|||+++|++|+||||++|||+++|++++|+++||++|++|||++|||.||+||++++|+|||+||++|++++
T Consensus        86 ~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np~GL~~~~~~sTA~Dla~l~~~~  165 (241)
T pfam00768        86 PGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNPTGLDNHGQYSSARDLAILARAL  165 (241)
T ss_pred             CCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECHHHHHHHHHHH
T ss_conf             89998899999999875645999999998458299999999999998199998666687777888666799999999999


Q ss_pred             CCCCEEEEEEEEEEEEEECC----EEEEEECHHCCCCC-CCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC
Q ss_conf             13620467761156543478----69972101025768-7005652242333717999999789799999817998
Q gi|254780698|r  202 RKNFPQYYKYFSIRKFRYRN----RIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT  272 (336)
Q Consensus       202 ~~~~p~~~~~~s~~~~~~~~----~~~~n~N~lL~~~~-g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s  272 (336)
                      ++++|+++.+++...+++.+    +++.|+|.+|..+. +++|+|||||++||+|||++++|||+|+|+||||++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~NtN~ll~~~~~~v~G~KTG~T~~AG~clv~~a~~~g~~~I~VvLgs~s  241 (241)
T pfam00768       166 IKDLPEVLSITKEKSATFNTPIYKINWMNTNGLLYRKGGNVDGLKTGYTKEAGYCLVATATEGGMRVISVVLNADT  241 (241)
T ss_pred             HHHCHHHEEEEEEEEEEECCCCCEEEEECCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCC
T ss_conf             8749584088877899974787358997379510057985799995253166645999999999899999949999


No 7  
>COG2367 PenP Beta-lactamase class A [Defense mechanisms]
Probab=99.38  E-value=5e-12  Score=90.65  Aligned_cols=213  Identities=23%  Similarity=0.219  Sum_probs=139.2

Q ss_pred             CCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC--CCCCCCEEEEE
Q ss_conf             6319999988962831136998888-13879999999999755589885541115367612454432--25788568830
Q gi|254780698|r   53 KYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL--YLKEKTYFTTE  129 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~--~l~~g~~~tv~  129 (336)
                      .....+.|.++| .+.+-|.++++| ||+-|+--+..++++++.|++.|++++++++ ...+++|.+  ....|..++++
T Consensus        64 ~~~~~v~d~~t~-~~~~~n~~~~fp~aSt~K~~v~~a~l~~v~~G~~~l~e~~ti~~-d~~~~~s~~~~~~~~g~~~t~~  141 (329)
T COG2367          64 RVGVYVLDVDTG-ELIAINGDERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITK-DDRVGGSGVLQYLVGGGGSTLR  141 (329)
T ss_pred             EEEEEEEECCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHCCCCCHHEEECCCCCEEHH
T ss_conf             267999966887-31311577521257899999999999971457557554201043-3322576111131578835799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCC--------CCCCCC----CCCCHHHHHHH
Q ss_conf             245788998777776545542010057899988876887266122200245--------433334----45301345555
Q gi|254780698|r  130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS--------GLHDKN----QITTARDQAIL  197 (336)
Q Consensus       130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~--------Gl~~~~----~~tta~Dla~l  197 (336)
                      |++..|+..|.|-|...|.+.++|-     ...|.+.+++||..|+...+-        |-++..    ..+++.+...+
T Consensus       142 el~~~mi~~SDNtAtnmLi~rlg~~-----~~v~~~l~~~Gl~~t~~~~~~~~~ln~~~~~~d~~~~~~~~t~a~~~~~L  216 (329)
T COG2367         142 ELLTKMITASDNTATNMLIERLGGP-----KALNEWLRSIGLPNTRLRRPYMPDLNRFNGPYDPRDSGKTTTPADDAATL  216 (329)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHCCH-----HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             9996522214028889999993581-----99999999818832231000266200266776633355656878999999


Q ss_pred             HHHHCCCCEEEEEEE-EEEEEEECCEEEEEEC---HHC---CCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEEC
Q ss_conf             542013620467761-1565434786997210---102---576870056522423337179999997897-99999817
Q gi|254780698|r  198 GILLRKNFPQYYKYF-SIRKFRYRNRIITNHN---KLL---NKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMG  269 (336)
Q Consensus       198 ~~~~~~~~p~~~~~~-s~~~~~~~~~~~~n~N---~lL---~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg  269 (336)
                      .+.++.....--... ..-.+-.....+.|+.   .++   ....+.++-|||.......+=++.....+. .+++.+++
T Consensus       217 ~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~~~ia~K~G~~l~~~~~D~~~~~~~~~~~~v~~~~~  296 (329)
T COG2367         217 LQLILGAVLSPSDRATGLSGYLAEWALLANTIGRDWLLRAGLPFDWAIAHKTGTGLGGTANDVGIIWAPVPKPIVAAVIG  296 (329)
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEE
T ss_conf             99873355785422344058888789986266864320103874422304656346788776378856988448999973


Q ss_pred             CCC
Q ss_conf             998
Q gi|254780698|r  270 MPT  272 (336)
Q Consensus       270 ~~s  272 (336)
                      ...
T Consensus       297 ~~~  299 (329)
T COG2367         297 ERP  299 (329)
T ss_pred             CCC
T ss_conf             476


No 8  
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=99.16  E-value=1.9e-10  Score=81.17  Aligned_cols=139  Identities=14%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH-HHHCC--CCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf             83024578899877777654554201-------00578999888768-87266--1222002454333344530134555
Q gi|254780698|r  127 TTEQGILALITRSANDVSTAFGEFIS-------GSEKKFAILMSNKA-KKIGM--QNTIYKNASGLHDKNQITTARDQAI  196 (336)
Q Consensus       127 tv~dLl~~lli~S~NdAa~alAe~i~-------Gs~~~Fv~~MN~~A-~~lGl--~~t~f~np~Gl~~~~~~tta~Dla~  196 (336)
                      ++.++++.|+-.|.|--|..|...++       |+.+.-.+.+.+.. .++|+  .+..+.|.+||...+ ..|++.|..
T Consensus       294 pL~eiv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~~~~i~DGSGLSR~N-riSp~~l~~  372 (477)
T PRK11113        294 PLHDLLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLGNTIIADGSGLSRHN-LIAPATMMQ  372 (477)
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHH
T ss_conf             9999999998538469999999999998348999889999999999998409897777774588888244-729999999


Q ss_pred             HHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE
Q ss_conf             5542013620467761156543478699721010257-687005652242333717999999-78979999981
Q gi|254780698|r  197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM  268 (336)
Q Consensus       197 l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl  268 (336)
                      +..++..+ |....+...-..-....++.+++.+... ..|-.=.|||+-+ .=.||.+... ++|++++.++|
T Consensus       373 lL~~~~~~-~~~~~~~~sLPiaG~dGTL~~R~~~~~~~~~g~v~aKTGTL~-gV~sLAGYv~~~~G~~l~Fsi~  444 (477)
T PRK11113        373 VLQYIAQH-DKELNLISMLPLAGYDGTLQYRGSLHQAPVDGKVSAKTGSLQ-GVYNLAGFITTASGQRMAFVQF  444 (477)
T ss_pred             HHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEE
T ss_conf             99999869-427889974885677885455566667765686999874356-8357179999899599999999


No 9  
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=98.65  E-value=6.7e-06  Score=54.11  Aligned_cols=206  Identities=15%  Similarity=0.050  Sum_probs=107.3

Q ss_pred             CEEEEECCCCEEEEE-CCC----C------------C-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             199999889628311-369----9------------8-888138799999999997555898855411153676124544
Q gi|254780698|r   55 SSIVIDVNKNQMTGF-KQD----E------------P-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS  116 (336)
Q Consensus        55 sAiv~D~~tG~ILy~-Kn~----~------------~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s  116 (336)
                      |+|+||.+||+||.- -.+    +            . +.|.|+-|.+|+..+||   +|.+.+++.+..... ...++.
T Consensus         2 a~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe---~g~~~~~~~~~~~~~-~~~~~~   77 (296)
T pfam00905         2 SAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALD---NGILKPEETFDDWPG-LPVGGY   77 (296)
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH---CCCCCCCCCCCCCCC-CCCCCC
T ss_conf             5999989999299998689889787664222187668658848999999999998---799887611147764-347993


Q ss_pred             CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC---------------
Q ss_conf             32257885688302457889987777765455420100578999888768872661222002454---------------
Q gi|254780698|r  117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG---------------  181 (336)
Q Consensus       117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G---------------  181 (336)
                      .. -.......-.--++-.+..|.|-..+-|++.++.      +.+.+.++++|+....-....+               
T Consensus        78 ~~-~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~------~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~~~~  150 (296)
T pfam00905        78 TI-KDWNQDGSGTITLREALEYSSNWYFQQLALKLGK------DKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRGDGA  150 (296)
T ss_pred             CE-ECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             22-4689998875549999985096778999997084------7899999971888776888864435667775543101


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHCCC----CEEEEEEEEEE-EEEEC-CEEEE-----EECHHC-----------CCCCC
Q ss_conf             ---33334453013455555420136----20467761156-54347-86997-----210102-----------57687
Q gi|254780698|r  182 ---LHDKNQITTARDQAILGILLRKN----FPQYYKYFSIR-KFRYR-NRIIT-----NHNKLL-----------NKMHN  236 (336)
Q Consensus       182 ---l~~~~~~tta~Dla~l~~~~~~~----~p~~~~~~s~~-~~~~~-~~~~~-----n~N~lL-----------~~~~g  236 (336)
                         +-......|+.+|+.....+..+    .|.+.+-.... ..... ...+.     .-..+|           .....
T Consensus       151 ~~~~G~G~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~~~~~~is~~~a~~v~~~l~~vv~~gt~~~~~~~~  230 (296)
T pfam00905       151 TTAWGQGSLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLKLVVNDGGGAAAVPGY  230 (296)
T ss_pred             HEEEECCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             01010676622699999999998719968376999500147898222340389999999999998507788743346897


Q ss_pred             CEEEEECCCCCCC----------CEEEEEEEECCEEEE-EEEECCC
Q ss_conf             0056522423337----------179999997897999-9981799
Q gi|254780698|r  237 IDGIKTGYTRNSG----------FNIVTSLRYKDDPIV-AVVMGMP  271 (336)
Q Consensus       237 ~~G~KTG~T~~AG----------~clv~~a~~~g~~lI-~Vvlg~~  271 (336)
                      -.+.|||++....          .-|++.+--++-++. +|+++.+
T Consensus       231 ~vaGKTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~~~  276 (296)
T pfam00905       231 KVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDP  276 (296)
T ss_pred             CEEEEEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC
T ss_conf             2689982536658888878865899999998799829999998668


No 10 
>PRK10795 penicillin-binding protein 2; Provisional
Probab=98.59  E-value=1.4e-05  Score=52.18  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=122.8

Q ss_pred             CCCCEEEEECCCCEEEEE-CC-------------------------------C-CCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             763199999889628311-36-------------------------------9-9888-813879999999999755589
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGF-KQ-------------------------------D-EPRY-PASLTKMMTLYIIFEYLQSKK   97 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~-Kn-------------------------------~-~~~~-PASlTKlMTa~v~le~i~~g~   97 (336)
                      ...++||||.+||+||.- ..                               + ...| |+|+=|++|+..+||   .|.
T Consensus       269 ~~gavVvmd~~TGeILAmaS~P~fdpN~~~~~~~~~~~~~~~~~~~~p~~Nra~~~~yePGStfK~~t~~aaLe---~g~  345 (619)
T PRK10795        269 SRAAVVVTDPRTGGILALVSNPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALS---AGV  345 (619)
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHEECCCCCCCCHHHHHHHHHHH---CCC
T ss_conf             77259999679884899981687784664157787889986338676520211011668986069999999997---499


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCCC----CC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             885541115367612454432257----88-5688302457889987777765455420100578999888768872661
Q gi|254780698|r   98 LHLNTQIPVSKTAATQNPSKLYLK----EK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ  172 (336)
Q Consensus        98 i~~~~~v~is~~a~~~~~s~~~l~----~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~  172 (336)
                      +++++.+.. ...+..++....++    .| ..++    +...+..|.|...+-+|..++.      +.|.+.++.+|+.
T Consensus       346 i~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~G~~~----~~~al~~SsNv~~~~i~~~lg~------~~~~~~~~~fG~g  414 (619)
T PRK10795        346 ITRNTSLFD-PGWWQLPGSEKRYRDWKKWGHGRLN----VTKSLEESADTFFYQVAYDMGI------DRLSEWMGKFGYG  414 (619)
T ss_pred             CCCCCEEEE-CCCEEECCCCCCCCCCCCCCCCCCH----HHHHHHHCCCHHHHHHHHHHCC------HHHHHHHHHCCCC
T ss_conf             999977960-9933767886225668889997400----8889886355999999887052------2554455532788


Q ss_pred             CCCEECC----CCCC-CC---------------------CC---CCCHHHHHHHHHHHCCC----CEEEEEEEEEEE--E
Q ss_conf             2220024----5433-33---------------------44---53013455555420136----204677611565--4
Q gi|254780698|r  173 NTIYKNA----SGLH-DK---------------------NQ---ITTARDQAILGILLRKN----FPQYYKYFSIRK--F  217 (336)
Q Consensus       173 ~t~f~np----~Gl~-~~---------------------~~---~tta~Dla~l~~~~~~~----~p~~~~~~s~~~--~  217 (336)
                      ...-..-    .|+- ..                     +|   ..|+--|+.....+...    .|.+..-.....  .
T Consensus       415 ~~tgi~lp~E~~G~~p~~~w~~~~~~~~w~~~~~~~~siGQG~~~~TPlQla~~~~aiaN~G~~~~P~lv~~~~~~~~~v  494 (619)
T PRK10795        415 HYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQV  494 (619)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEE
T ss_conf             76688876655786787566542024666645455541204255635999999999996398086347998751489664


Q ss_pred             EECC---EEEEE--E-----------------C----HHCCCCCCCEEEEECCCCCCC------C-------------EE
Q ss_conf             3478---69972--1-----------------0----102576870056522423337------1-------------79
Q gi|254780698|r  218 RYRN---RIITN--H-----------------N----KLLNKMHNIDGIKTGYTRNSG------F-------------NI  252 (336)
Q Consensus       218 ~~~~---~~~~n--~-----------------N----~lL~~~~g~~G~KTG~T~~AG------~-------------cl  252 (336)
                      .+..   .....  .                 +    ......++-.|+|||+....|      +             .|
T Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~m~~Vv~~~~GT~~~~~~~~~~~vaGKTGTAqv~~~~~~~~~~~~~~~~~~~~hawf  574 (619)
T PRK10795        495 PWVQPHEPPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLM  574 (619)
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             20366655445557789999999999867279952560005899679998253246366787532343345456777599


Q ss_pred             EEEEEECCEEEEEEEE---CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999978979999981---79987899999999999984015
Q gi|254780698|r  253 VTSLRYKDDPIVAVVM---GMPTSQERDQKALELITSFLEKK  291 (336)
Q Consensus       253 v~~a~~~g~~lI~Vvl---g~~s~~~R~~~~~~Ll~~~f~~~  291 (336)
                      ++.|--++-++.++|+   |+... .--.-+++++++.+...
T Consensus       575 ~gfaP~d~P~~av~V~ve~gg~G~-~aapi~r~i~~~~l~~~  615 (619)
T PRK10795        575 TAFAPYNNPQVAVAIILENGGAGP-AVGTIMRQILDHIMLGD  615 (619)
T ss_pred             EEEEECCCCEEEEEEEEECCCCCC-HHHHHHHHHHHHHHCCC
T ss_conf             999776898899999997998402-68999999999996489


No 11 
>PRK11289 ampC beta-lactamase; Provisional
Probab=98.46  E-value=9.3e-05  Score=47.30  Aligned_cols=121  Identities=16%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             CCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHH------------------
Q ss_conf             888-8138799999999997555898855411153676124544322578856883024578------------------
Q gi|254780698|r   74 PRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILA------------------  134 (336)
Q Consensus        74 ~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~~------------------  134 (336)
                      -++ .||+||.+|+.+++..+++|+++||++|.-  +--...++     .-+.+|+++||.-                  
T Consensus        83 T~F~iaSisK~fTa~~~~~Lv~~G~L~ldd~v~~--ylP~~~~~-----~~~~ITi~~Ll~HtsG~~p~~~~~~~~~~~~  155 (387)
T PRK11289         83 TLFELGSVSKTFTATLAAYAQARGELSLSDPASK--YLPELKGS-----PFDGITLLHLATYTAGGLPLQVPDEVKDDAQ  155 (387)
T ss_pred             CEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCCCCC-----CCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             8785211059999999999997696676672988--48265788-----8788649998754589974348765699999


Q ss_pred             ----HHHH----------H-HHHHHHHH---HHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC--------CCC----
Q ss_conf             ----8998----------7-77776545---542010057899988876-887266122200245--------433----
Q gi|254780698|r  135 ----LITR----------S-ANDVSTAF---GEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS--------GLH----  183 (336)
Q Consensus       135 ----lli~----------S-~NdAa~al---Ae~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~--------Gl~----  183 (336)
                          +--.          + .|-.-..+   .|.+.|  ..|.+.|.++ .+-|||++|.|.-|.        |..    
T Consensus       156 ~~~~~~~~~~~~~pG~~~~YsN~~~~llg~ive~vsg--~~~~~~l~~~if~PLgM~~T~~~~~~~~~~~~A~Gy~~~~~  233 (387)
T PRK11289        156 LLAYFKAWQPAYAPGTQRLYSNPSIGLLGYLAAKSMG--QPFAQLMEQRLFPPLGLTHTYINVPAAEMADYAQGYNKDGK  233 (387)
T ss_pred             HHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             9999984598889998666264899999999999969--89999999856444699776347995673566645356896


Q ss_pred             ------------CCCCCCCHHHHHHHHHHHCC
Q ss_conf             ------------33445301345555542013
Q gi|254780698|r  184 ------------DKNQITTARDQAILGILLRK  203 (336)
Q Consensus       184 ------------~~~~~tta~Dla~l~~~~~~  203 (336)
                                  ..+-++|+.||++.++..+.
T Consensus       234 p~~~~~~~~~a~AGGl~STa~DL~kwl~a~L~  265 (387)
T PRK11289        234 PVRVNPGVLDAEAYGVKSTAADMLRFVQANLG  265 (387)
T ss_pred             EEECCCCCCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf             22048776667843567789999999998568


No 12 
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=98.23  E-value=0.00037  Score=43.71  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CCCCEEEEECCCCEEEEEC-------------------------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             7631999998896283113-------------------------------6-9-9888-813879999999999755589
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGFK-------------------------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKK   97 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~K-------------------------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~   97 (336)
                      ...++||||.+||+||.--                               | + ...| |.|+=|+.|+..+||   +|.
T Consensus       247 ~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~  323 (592)
T TIGR03423       247 RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGV  323 (592)
T ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCC
T ss_conf             73569999668884899961788770230378798899987439665421201122446872689999999997---599


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCC--CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8855411153676124544322--5788-568830245788998777776545542010057899988876887266122
Q gi|254780698|r   98 LHLNTQIPVSKTAATQNPSKLY--LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT  174 (336)
Q Consensus        98 i~~~~~v~is~~a~~~~~s~~~--l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t  174 (336)
                      +++++.+... .....++....  -..| ..++    +...+..|.|...+-+|+.++.      +.+-..++++|+...
T Consensus       324 i~~~~~~~~~-g~~~~~~~~i~d~~~~~~g~lt----~~~~l~~SsNvg~~~ia~~lg~------~~~~~~~~~fGfg~~  392 (592)
T TIGR03423       324 ITPDTRINCP-GYFQLGGRRFRCWKRGGHGRVD----LRKAIEESCDVYFYQLALRLGI------DKIAEYAKKFGFGQK  392 (592)
T ss_pred             CCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEC----HHHHHHEEECHHHHHHHHHCCH------HHHHHHHHHCCCCCC
T ss_conf             9998589607-8302598523047888863014----5544103833999789886187------889999984678877


Q ss_pred             C
Q ss_conf             2
Q gi|254780698|r  175 I  175 (336)
Q Consensus       175 ~  175 (336)
                      .
T Consensus       393 t  393 (592)
T TIGR03423       393 T  393 (592)
T ss_pred             C
T ss_conf             6


No 13 
>pfam00144 Beta-lactamase Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
Probab=98.19  E-value=3.4e-05  Score=49.88  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             EEEECCCCEEEEECC-------------CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf             999988962831136-------------998888-138799999999997555898855411153676124544322578
Q gi|254780698|r   57 IVIDVNKNQMTGFKQ-------------DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE  122 (336)
Q Consensus        57 iv~D~~tG~ILy~Kn-------------~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~  122 (336)
                      .|.=.+.|+++|++.             ++-++. ||+||.+|+.+++..+++|++++|++|.-  +--...     ...
T Consensus        18 ~v~V~~~g~~~~~~~~G~~d~~~~~p~~~dT~f~iaSvsK~~ta~~i~~Lve~G~l~Ld~~v~~--ylP~~~-----~~~   90 (327)
T pfam00144        18 AVAVTRDGKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDPVSK--YLPEFA-----GSG   90 (327)
T ss_pred             EEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCCC-----CCC
T ss_conf             9999999999999868884477798899998587301279999999999997599886643254--286667-----787


Q ss_pred             CCEEEEEHHHH--------------------------HHHH------------HHHHHHHHHHH---HHHCCHHHHHHHH
Q ss_conf             85688302457--------------------------8899------------87777765455---4201005789998
Q gi|254780698|r  123 KTYFTTEQGIL--------------------------ALIT------------RSANDVSTAFG---EFISGSEKKFAIL  161 (336)
Q Consensus       123 g~~~tv~dLl~--------------------------~lli------------~S~NdAa~alA---e~i~Gs~~~Fv~~  161 (336)
                      .+.+|+++||.                          .+.-            .| |-....|+   |.+.|  ..|.+.
T Consensus        91 ~~~iTi~~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ys-n~g~~llg~iie~~tg--~~~~~~  167 (327)
T pfam00144        91 KGGVTLRDLLTHTSGLPPLFAPDDLEEAAADAAELVAALAALPPVWPPGTRFGYS-NTAYGLLGELLERVTG--QSYEEL  167 (327)
T ss_pred             CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEC-CCHHHHHHHHHHHHHC--CCHHHH
T ss_conf             6786599994465799976556543234689999999998389868999656636-8069999999999879--789999


Q ss_pred             HHHH-HHHHCCCCCCEECCCCCC-------------------------CCCCCCCHHHHHHHHHHHCC
Q ss_conf             8876-887266122200245433-------------------------33445301345555542013
Q gi|254780698|r  162 MSNK-AKKIGMQNTIYKNASGLH-------------------------DKNQITTARDQAILGILLRK  203 (336)
Q Consensus       162 MN~~-A~~lGl~~t~f~np~Gl~-------------------------~~~~~tta~Dla~l~~~~~~  203 (336)
                      +.+. .+-|||.+|.|..+.-..                         ..+-++|+.||++....+..
T Consensus       168 ~~~~I~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~st~~Dl~kf~~~l~~  235 (327)
T pfam00144       168 LGDRILRPLGMTETELGVPEPGDPRDAAGYTGEGPPVRVSPGPLDAGAYGGLKSTARDLARFLLALLG  235 (327)
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC
T ss_conf             99997742499777578982442670451135788754456556777775315679999999999848


No 14 
>PRK10662 beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=98.12  E-value=1.2e-05  Score=52.64  Aligned_cols=172  Identities=19%  Similarity=0.170  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCC--------------------CCCCCEEEEECCCCEEEEEC------------CC
Q ss_conf             43588999999999998620310014--------------------87631999998896283113------------69
Q gi|254780698|r   25 QRNIQLMGKILFLSIIMISMASELHA--------------------KPKYSSIVIDVNKNQMTGFK------------QD   72 (336)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~sAiv~D~~tG~ILy~K------------n~   72 (336)
                      .+++.+...+|..++.+....+.+..                    .|..+..|+  +.|+++|..            ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iD~~~~~~m~~~~iPG~avavv--~~~~~~~~~yG~ad~~~~~~~t~   79 (377)
T PRK10662          2 KRALLLSAALLAASLTSVAAAQPIADPLLASDIVDRYAQHIFYGSGATGMALVVI--DGNQRVFRSYGETRPGNNVRPQL   79 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--ECCEEEEEEEEEEECCCCCCCCC
T ss_conf             1689999999999988504876557802577889999999998579984899999--89999997136643577989999


Q ss_pred             CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH------------------
Q ss_conf             9888-813879999999999755589885541115367612454432257885688302457------------------
Q gi|254780698|r   73 EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL------------------  133 (336)
Q Consensus        73 ~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~------------------  133 (336)
                      +-.+ .||+||.+|+.+++..+++|+++||++|.-  +...  .....-..++.+|+++|+.                  
T Consensus        80 dT~F~IaSiSK~fTa~ai~~Lve~Gkl~lddpv~~--ylP~--~~~~~~~~~~~ITlr~LltHtSGlp~~~~~~~~~~~~  155 (377)
T PRK10662         80 DSVIRIASITKLMTSEVLVKLADDGTVKLTDPLSK--YAPP--GVRVPTYNGTPITLLNLATHTSALPREQPGGPAHRPV  155 (377)
T ss_pred             CCEEEEEECHHHHHHHHHHHHHHCCCEECCCCHHH--HCCC--CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             98787004319999999999997792206781999--6865--1357867999656999956207898767887323632


Q ss_pred             -----------HHHHH----------H-HHH---HHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC-------
Q ss_conf             -----------88998----------7-777---76545542010057899988876-887266122200245-------
Q gi|254780698|r  134 -----------ALITR----------S-AND---VSTAFGEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS-------  180 (336)
Q Consensus       134 -----------~lli~----------S-~Nd---Aa~alAe~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~-------  180 (336)
                                 .+.-.          . .|-   .+-.+.|.+.|  ..|.+.|.++ -+-|||++|.|.-+.       
T Consensus       156 ~~~~~~~~~~~~l~~~~~~~~PG~~~~YSN~gy~llg~vie~vsG--~~~~~~~~~~If~PLgM~~T~~~~~~~~~~~~a  233 (377)
T PRK10662        156 FVWPTREQRWKWLSTAKLKVAPGTQAAYSNLAFDLLADALANAAG--KPYTQLLEEKITAPLGMKDTTFTPSPDQCKRLM  233 (377)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC
T ss_conf             235899999999843899889997444162889999999999969--899999999734116987665778967751401


Q ss_pred             -CC------------CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             -43------------3334453013455555420136
Q gi|254780698|r  181 -GL------------HDKNQITTARDQAILGILLRKN  204 (336)
Q Consensus       181 -Gl------------~~~~~~tta~Dla~l~~~~~~~  204 (336)
                       |.            +..+-+||+.||++-++..+..
T Consensus       234 ~gy~~~~~~~~~~~~~AGgl~STa~Dmar~~~a~L~~  270 (377)
T PRK10662        234 VGKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQFLSS  270 (377)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCC
T ss_conf             0567778778766677500288899999999998367


No 15 
>pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Probab=97.93  E-value=0.00011  Score=46.90  Aligned_cols=179  Identities=13%  Similarity=0.089  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHC------CHHH
Q ss_conf             9999999997555898855411153676124544322578856883024578899877777654554201------0057
Q gi|254780698|r   83 MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------GSEK  156 (336)
Q Consensus        83 lMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~------Gs~~  156 (336)
                      ...+.+.-+.+.+.-+.....+....    .......+..-..-++.++++.|+-.|.|--|..|...++      |+.+
T Consensus       190 ~~~~~~f~~~L~~~Gi~v~~~~~~~~----~~~~~~~l~~~~S~pL~~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~  265 (383)
T pfam02113       190 GYAGAIFAKALALQGITVSGDIGRAG----TPQSARVLAVHQSAPLSDLLKKMMKKSDNLIAESLFREIGVAIKRPGSFE  265 (383)
T ss_pred             HHHHHHHHHHHHHCCCEEECCEEECC----CCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999999999976987806354246----89985699999697999999999741856999999999998627998889


Q ss_pred             HHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEE---CHHC
Q ss_conf             89998887688726612--220024543333445301345555542013620467761156543478699721---0102
Q gi|254780698|r  157 KFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH---NKLL  231 (336)
Q Consensus       157 ~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~---N~lL  231 (336)
                      .-...+.+..+++|+..  .++.+.+||... +..|+++|..+.+++... |.+..+.+.-..--...++.++   +++-
T Consensus       266 ~g~~~v~~~L~~~gi~~~~~~l~DGSGLSr~-n~is~~~l~~lL~~~~~~-~~~~~~~~sLPvaG~dGTL~~r~~~~~~~  343 (383)
T pfam02113       266 AGADAVRSILSTAGIDTANLVLRDGSGLSRH-NLVTAATLAQLLQAIADQ-PALQALLDSLPVAGESGTLVGGTLRNRFK  343 (383)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-CCCCHHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999974999556478448988733-454999999999999869-43889998398268888555555555445


Q ss_pred             C-CCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE
Q ss_conf             5-7687005652242333717999999-78979999981
Q gi|254780698|r  232 N-KMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM  268 (336)
Q Consensus       232 ~-~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl  268 (336)
                      . ...|..=.|||+-+ .-.||.+... ++|++++.++|
T Consensus       344 ~~~~~G~v~aKTGTL~-~V~sLaGyv~~~~G~~l~Fsi~  381 (383)
T pfam02113       344 GTPAVGKVRAKTGSLT-GVYSLAGYVTTDSGRKLAFSFI  381 (383)
T ss_pred             CCCCCCEEEEEEEECC-CCEEEEEEEECCCCCEEEEEEE
T ss_conf             7775675999985006-9579479999799899999999


No 16 
>COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Probab=97.44  E-value=0.0017  Score=39.84  Aligned_cols=140  Identities=14%  Similarity=0.054  Sum_probs=90.4

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHH-HHCC--CCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf             88302457889987777765455420100------5789998887688-7266--1222002454333344530134555
Q gi|254780698|r  126 FTTEQGILALITRSANDVSTAFGEFISGS------EKKFAILMSNKAK-KIGM--QNTIYKNASGLHDKNQITTARDQAI  196 (336)
Q Consensus       126 ~tv~dLl~~lli~S~NdAa~alAe~i~Gs------~~~Fv~~MN~~A~-~lGl--~~t~f~np~Gl~~~~~~tta~Dla~  196 (336)
                      .++.++|+-||-.|.|.-|.+|.+.+++.      ...-++.|.+.-. +.|.  .+....|.+||.- ++.-|++-|..
T Consensus       293 ~PL~~lLk~m~k~SnN~~Ae~L~~~ig~~~~~~gs~~~~~~~v~~~l~~~~GId~~~~vL~DGSGLSr-~Nritpr~l~~  371 (470)
T COG2027         293 APLSQLLKDMNKYSDNLMAEALFRAIGGAIKRPGSVSAAADAVRQILLQRAGIDLAGLVLADGSGLSR-DNRITPRTLVQ  371 (470)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH-HCCCCHHHHHH
T ss_conf             88899999998615089999999984534478742667789999999987398856648741898871-10229899999


Q ss_pred             HHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHC-CCCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEECC
Q ss_conf             55420136204677611565434786997210102-57687005652242333717999999-7897999998179
Q gi|254780698|r  197 LGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMGM  270 (336)
Q Consensus       197 l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL-~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvlg~  270 (336)
                      +.+++..+ |....+...--.-....++.|+  +- -.-.|-.=.|||+.. .=+.|.+..+ ++|+++..|++-.
T Consensus       372 ~Lq~~~~~-~~~~~~~dsLPIAG~~GTL~~R--~~~~~~~G~v~aKTGTL~-gV~aLaGyv~~~~g~~l~Fai~~N  443 (470)
T COG2027         372 LLQAAAQS-PAAAALIDSLPIAGVDGTLRNR--LRGTGAAGKVRAKTGTLT-GVSALAGYVTTASGRKLAFAIILN  443 (470)
T ss_pred             HHHHHHCC-CHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCEEEEECCCC-CCHHHEEEEECCCCCEEEEEEECC
T ss_conf             99998729-7177899847737778750131--446787871788631232-404111068768898899999658


No 17 
>PRK09506 mrcB penicillin-binding protein 1b; Reviewed
Probab=97.00  E-value=0.024  Score=32.86  Aligned_cols=140  Identities=16%  Similarity=0.121  Sum_probs=81.0

Q ss_pred             CCEEEEECCCCEEEEE---CC--------C-C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC-CC-CCC
Q ss_conf             3199999889628311---36--------9-9-8888138799999999997555898855411153676124-54-432
Q gi|254780698|r   54 YSSIVIDVNKNQMTGF---KQ--------D-E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NP-SKL  118 (336)
Q Consensus        54 ~sAiv~D~~tG~ILy~---Kn--------~-~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~-~~-s~~  118 (336)
                      .|.+++|..||+|+.-   .+        + + .|.|.|+-|-.+-+.+++.  .+...+++.+.-+...... +| ...
T Consensus       470 ~A~VviD~~TG~V~AmVGG~d~~~sgfNRA~~A~RQ~GSt~KPfvY~aAL~~--~~~~~~~T~l~D~Pi~~~~~~G~~W~  547 (839)
T PRK09506        470 TAMVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ--PDKYRLNTWIADAPISLRQPNGQVWS  547 (839)
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC--CCCCCCCCEECCCCEEEECCCCCCCC
T ss_conf             5799997899859999748887766761345467799765118999999866--79977764524535486468987438


Q ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             25788568830245788998777776545542010057899988876887266122200245433334453013455555
Q gi|254780698|r  119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG  198 (336)
Q Consensus       119 ~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~  198 (336)
                      .-+.+..+.-.-.++-.+..|-|-+++-|+..++-+      ..-..++++|...........+.-...-.|..+|+..-
T Consensus       548 P~Nyd~~~~G~VtLr~ALa~S~N~paVrL~~~vGl~------~v~~~~~~lGi~~~~~~~~pSlaLGa~evSplemA~AY  621 (839)
T PRK09506        548 PQNDDRRYSGRVMLVDALTRSMNVPTVNLGMALGLP------AVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAF  621 (839)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHH------HHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHH
T ss_conf             864899865712199999858389999999987989------99999998699866688886731077888899999999


Q ss_pred             HHH
Q ss_conf             420
Q gi|254780698|r  199 ILL  201 (336)
Q Consensus       199 ~~~  201 (336)
                      ..+
T Consensus       622 atf  624 (839)
T PRK09506        622 QTI  624 (839)
T ss_pred             HHH
T ss_conf             999


No 18 
>PRK13128 D-aminopeptidase; Reviewed
Probab=96.95  E-value=0.0058  Score=36.58  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             CCCCEEEEECC-------------CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             88962831136-------------99888-8138799999999997555898855411
Q gi|254780698|r   61 VNKNQMTGFKQ-------------DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI  104 (336)
Q Consensus        61 ~~tG~ILy~Kn-------------~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v  104 (336)
                      ...|+|+|+|.             ++-++ .||+||.+|+.+++.-.++|++ +|++|
T Consensus        30 vkdGkvv~~kgyG~adle~~~Pvt~dT~F~IaSvTK~FTaaail~Lveegkl-LDdpV   86 (518)
T PRK13128         30 VKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQFTCAVLLDCIGEPEM-LDAAL   86 (518)
T ss_pred             EECCEEEEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC-CCCCH
T ss_conf             9999999994054442677988999987864313799999999999862986-56637


No 19 
>PRK03642 hypothetical protein; Provisional
Probab=96.93  E-value=0.0013  Score=40.41  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=39.6

Q ss_pred             CEEEEECCCCEEEEECC-C-------------------CCCC-CCHHHHHH-HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             19999988962831136-9-------------------9888-81387999-9999999755589885541115
Q gi|254780698|r   55 SSIVIDVNKNQMTGFKQ-D-------------------EPRY-PASLTKMM-TLYIIFEYLQSKKLHLNTQIPV  106 (336)
Q Consensus        55 sAiv~D~~tG~ILy~Kn-~-------------------~~~~-PASlTKlM-Ta~v~le~i~~g~i~~~~~v~i  106 (336)
                      .+.++=+..|+|+|.|. .                   +-.+ .||+||++ |+..++.-.++|++.+|++|.-
T Consensus        57 G~~v~V~r~Gkiv~~ka~G~~~~~~g~~~~~~~~p~t~dTiF~iAS~TK~~~T~~Alm~LvE~Gkl~LddpV~~  130 (432)
T PRK03642         57 GANLLVIKDNHIVKRKAWGYAKKYDGSTLLAHPIKATTNTMYDLASNTKMYATNFALQKLVSEGKLDVNDLISK  130 (432)
T ss_pred             CEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             65999998999999841145433566433346888998867663546099999999999998698774227988


No 20 
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=96.83  E-value=0.034  Score=32.01  Aligned_cols=136  Identities=10%  Similarity=-0.034  Sum_probs=78.5

Q ss_pred             CCEEEEECCCCEEEEE---C-------C-CC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-HC--CCCCC
Q ss_conf             3199999889628311---3-------6-99--8888138799999999997555898855411153676-12--45443
Q gi|254780698|r   54 YSSIVIDVNKNQMTGF---K-------Q-DE--PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT--QNPSK  117 (336)
Q Consensus        54 ~sAiv~D~~tG~ILy~---K-------n-~~--~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a-~~--~~~s~  117 (336)
                      .|.++||..||+|+.=   .       | +.  .|-|.|.-|-..-..++   ++| +++.+.+.-+... +.  .+...
T Consensus       427 ~AlV~iDp~tG~V~A~vGG~d~~~s~fNrA~qa~RQpGStfKPfvYaaAl---e~G-~t~~t~v~D~Pi~~~~~~~g~~w  502 (850)
T PRK11636        427 SALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAM---DKG-LTLASMLNDVPISRWDAGAGSDW  502 (850)
T ss_pred             CEEEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHH---HCC-CCCCCEECCCCCEEECCCCCCCC
T ss_conf             21798606778346751675642113225443444788651789999999---749-99644505877123027888866


Q ss_pred             CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             22578856883024578899877777654554201005789998887688726612220024543333445301345555
Q gi|254780698|r  118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL  197 (336)
Q Consensus       118 ~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l  197 (336)
                      ..-+.+..+.-.--++-.+..|-|-.++-+.+.++-+      ..-+.++.+|+..........+--...-.|..+|+.-
T Consensus       503 ~P~N~~~~~~G~vtlr~AL~~S~N~~aVrl~~~vG~~------~~~~~~~~~Gi~~~~~~~~~slaLGs~~vtplema~A  576 (850)
T PRK11636        503 RPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVD------YAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARG  576 (850)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHH------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             7007998838869999999848479999999986969------9999999849985566766320257677679999999


Q ss_pred             HH
Q ss_conf             54
Q gi|254780698|r  198 GI  199 (336)
Q Consensus       198 ~~  199 (336)
                      -.
T Consensus       577 Ya  578 (850)
T PRK11636        577 YA  578 (850)
T ss_pred             HH
T ss_conf             99


No 21 
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=96.41  E-value=0.031  Score=32.24  Aligned_cols=229  Identities=14%  Similarity=0.061  Sum_probs=114.1

Q ss_pred             CCCCEEEEECCCCEEEEE-C----CC---------------------CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             763199999889628311-3----69---------------------9888-8138799999999997555898855411
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGF-K----QD---------------------EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQI  104 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~-K----n~---------------------~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v  104 (336)
                      ...+++|+|.+||+||.- .    |+                     ...| |.|+-|.+|+..+|+....+....+..+
T Consensus       266 ~~g~~vv~dp~tGeILAmas~P~ydpn~~~~~~~~~~~~~~~~n~a~~~~yePGStfK~~t~aaaL~~g~~~~~~~~~~~  345 (599)
T COG0768         266 KGGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPITAAAALETGNTGLFDPGSVL  345 (599)
T ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             60489998178884899956899998622332100233420244755170478210899999999976998534898547


Q ss_pred             CCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CEECC---C
Q ss_conf             1536761245443225788568830245788998777776545542010057899988876887266122-20024---5
Q gi|254780698|r  105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT-IYKNA---S  180 (336)
Q Consensus       105 ~is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t-~f~np---~  180 (336)
                      ..........+....-..+.    .--+...+..|.|..-.-||..++...      +.+.++++|...- .+--|   .
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~----~~~~~~al~~SsNv~f~~la~~~g~~~------~~~~~~~fGfg~~t~idl~~e~~  415 (599)
T COG0768         346 DGNGPKIRIWGRTGHDYGGR----PLTLTEALQKSSNVGFAKLALRLGPDG------LYDYLKKFGFGQKTGIDLPGETS  415 (599)
T ss_pred             ECCCCEEEECCCCCCCCCCC----CCCHHHHHHHHCHHHHHHHHHHHCHHH------HHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             36986164188156787763----128999988708099999999858588------99999876998755679866425


Q ss_pred             CC-CCC-----------------CCCCCHHHHHHHHHHHCCC----CEEEEEEEEEEEE-------EECCEE--------
Q ss_conf             43-333-----------------4453013455555420136----2046776115654-------347869--------
Q gi|254780698|r  181 GL-HDK-----------------NQITTARDQAILGILLRKN----FPQYYKYFSIRKF-------RYRNRI--------  223 (336)
Q Consensus       181 Gl-~~~-----------------~~~tta~Dla~l~~~~~~~----~p~~~~~~s~~~~-------~~~~~~--------  223 (336)
                      |+ ++.                 +-..|+--|+.....+..+    .|.+.+-......       ......        
T Consensus       416 g~~p~~~~~~~~~~~~~~~siGQ~~~vTPlQla~~~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~~~~~~~is~~~~~~  495 (599)
T COG0768         416 GLLPSREPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVLKKRVISPETAEK  495 (599)
T ss_pred             CCCCCCHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             65798200136721124404787402089999999999962997942589712446555421246643455589999999


Q ss_pred             -------EEEEC----HHCCC-CCCCEEEEECCCCCCCC------------EEEEEEEECCEEEE-EEEECCCC----HH
Q ss_conf             -------97210----10257-68700565224233371------------79999997897999-99817998----78
Q gi|254780698|r  224 -------ITNHN----KLLNK-MHNIDGIKTGYTRNSGF------------NIVTSLRYKDDPIV-AVVMGMPT----SQ  274 (336)
Q Consensus       224 -------~~n~N----~lL~~-~~g~~G~KTG~T~~AG~------------clv~~a~~~g~~lI-~Vvlg~~s----~~  274 (336)
                             ..+..    .-... -.+-.++|||+...+..            .|++.+-.++-+++ +|++..+.    ..
T Consensus       496 v~~~m~~Vv~~~~gg~~~~a~v~g~~iaGKTGTAq~~~~~~~~y~~~~~~~~Fvg~aP~d~P~~~v~v~v~~~~~~~g~~  575 (599)
T COG0768         496 VREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGRYHAWFVGFAPADNPKYAVAVLVDNPGGGYGGA  575 (599)
T ss_pred             HHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCHH
T ss_conf             99999987717877641104568952376501150334788863456534899997416899799999997788776235


Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999998401
Q gi|254780698|r  275 ERDQKALELITSFLEK  290 (336)
Q Consensus       275 ~R~~~~~~Ll~~~f~~  290 (336)
                      .--.-++.++++.+..
T Consensus       576 ~aapv~~~I~~~~~~~  591 (599)
T COG0768         576 VAAPVFKKIMERLLDY  591 (599)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             6799999999999997


No 22 
>COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Probab=96.31  E-value=0.011  Score=34.82  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=57.9

Q ss_pred             CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-----CCCCCCCCCCCCCEEE
Q ss_conf             31999998896283113699888-81387999999999975558988554111536761-----2454432257885688
Q gi|254780698|r   54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-----TQNPSKLYLKEKTYFT  127 (336)
Q Consensus        54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~-----~~~~s~~~l~~g~~~t  127 (336)
                      .+-.|.+.++|+++|+.|++..+ |||+.||.|++.+++.+-.     +-.....-+..     ..+|.......|+..-
T Consensus        38 ~~i~v~~~~~~~~~~~~~~~~~~~PASt~kl~T~~aal~~LG~-----~~r~~T~~~~~g~~~g~l~Gnl~~~~~Gdp~l  112 (470)
T COG2027          38 VGITVQDLDTGQPAYDYNADTMANPASTQKLLTALAALSVLGP-----DFRFTTELYTSGVKNGVLNGNLYLRGSGDPTL  112 (470)
T ss_pred             EEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             5788754688851110376556788511678899999985185-----41000254116643571043489963688777


Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             30245788998777776545542010057899
Q gi|254780698|r  128 TEQGILALITRSANDVSTAFGEFISGSEKKFA  159 (336)
Q Consensus       128 v~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv  159 (336)
                      -.+-+..+.-...+---.++..++-.+...|.
T Consensus       113 ~~~dl~~l~~~l~~~gv~ai~g~l~lD~s~~~  144 (470)
T COG2027         113 TREDLTKLAPDLKASGVTAITGLLVLDTSVFA  144 (470)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCEEECCEEEC
T ss_conf             87888899999986251001145664123332


No 23 
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=96.30  E-value=0.031  Score=32.23  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=104.3

Q ss_pred             CCCEEEEECCCCEEEE-------EC------C-CCC--CCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHC---
Q ss_conf             6319999988962831-------13------6-998--8881387999999999975558-9885541115367612---
Q gi|254780698|r   53 KYSSIVIDVNKNQMTG-------FK------Q-DEP--RYPASLTKMMTLYIIFEYLQSK-KLHLNTQIPVSKTAAT---  112 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy-------~K------n-~~~--~~PASlTKlMTa~v~le~i~~g-~i~~~~~v~is~~a~~---  112 (336)
                      ..|.++||.+||+|.+       .+      | +++  |-|-|+=|=.+.|.+  +|+.| +.++++.+.-.+..+.   
T Consensus       368 q~A~V~~D~~TG~v~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~--Ale~G~~~~~~~~~~D~P~~~~~~~  445 (700)
T TIGR02074       368 QAALVAIDPKTGAVRALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAA--ALEKGLKYTPASILDDEPITYSGDP  445 (700)
T ss_pred             CEEEEEEECCCCEEEEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHH--HHHHHCCCCCCCEEEECCEEECCCC
T ss_conf             50068984589768998746123777644642010002686512657999999--9985043470103330334535888


Q ss_pred             -CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--C-----EECCCCCCC
Q ss_conf             -45443225788568830245788998777776545542010057899988876887266122--2-----002454333
Q gi|254780698|r  113 -QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--I-----YKNASGLHD  184 (336)
Q Consensus       113 -~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t--~-----f~np~Gl~~  184 (336)
                       .|+....-+.|..+.=.=.|+-+|..|-|-.|+-|+..+|     |.+...+.++++|.+..  .     -..+-.|..
T Consensus       446 ~~G~~w~P~Ny~g~y~G~vtl~~ALa~S~N~pAv~l~~~vG-----~~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~ALG~  520 (700)
T TIGR02074       446 GNGGGWEPKNYGGKYRGNVTLRQALAQSINIPAVKLLDEVG-----FLDKVVALAKRFGITSPELPEKTLDPVLSLALGT  520 (700)
T ss_pred             CCCCCCCEECCCCCEEECCCHHHHHHHCCCHHHHHHHHHHC-----CHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             98895030006881461332999975122389999998707-----8279999999708878766665888756501066


Q ss_pred             CC--CCCCHHHHHHHHH
Q ss_conf             34--4530134555554
Q gi|254780698|r  185 KN--QITTARDQAILGI  199 (336)
Q Consensus       185 ~~--~~tta~Dla~l~~  199 (336)
                      -+  .-.|..+||.--.
T Consensus       521 ~e~~~Gv~pl~~A~AYa  537 (700)
T TIGR02074       521 VESRKGVSPLEMASAYA  537 (700)
T ss_pred             CCCCCCCCHHHHHHHHH
T ss_conf             54344756899998767


No 24 
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK.    D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis.
Probab=96.23  E-value=0.0031  Score=38.23  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=117.0

Q ss_pred             HHHHHHHCCCCCCCCCCC-CCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH
Q ss_conf             999975558988554111-53676124544322578856883024578899877777654554201-------0057899
Q gi|254780698|r   88 IIFEYLQSKKLHLNTQIP-VSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS-------GSEKKFA  159 (336)
Q Consensus        88 v~le~i~~g~i~~~~~v~-is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~-------Gs~~~Fv  159 (336)
                      +.-+.+++--|++...+. .++   ....+.+.|-.-....+.+||.-||-.|.|--|.+|-+.++       +|-+.-+
T Consensus       233 ~~~~~Lk~~GI~~~g~~~r~~~---~~~~~~~PLa~~~S~PL~~Ll~~mmk~SdN~~Ae~l~r~~~~~~~~~~~Sw~~g~  309 (427)
T TIGR00666       233 ILKQKLKQLGITVSGKILRAAQ---APEAGQVPLASHQSAPLIDLLKKMMKKSDNLIAEALFREVAVARIKRPGSWQKGV  309 (427)
T ss_pred             HHHHHHHHCCCCEEEEEEECCC---CCCCCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             9999999718962136774378---8875656533214886689999986210633378887631543126752078889


Q ss_pred             HHHHHHHHHHCC--CCCCEECCCCCCCCCCCCCHHHHHHHHHHHC-CCCEEEEEEEEEEEEEECCEEE-EEE--CHHCCC
Q ss_conf             988876887266--1222002454333344530134555554201-3620467761156543478699-721--010257
Q gi|254780698|r  160 ILMSNKAKKIGM--QNTIYKNASGLHDKNQITTARDQAILGILLR-KNFPQYYKYFSIRKFRYRNRII-TNH--NKLLNK  233 (336)
Q Consensus       160 ~~MN~~A~~lGl--~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~-~~~p~~~~~~s~~~~~~~~~~~-~n~--N~lL~~  233 (336)
                      +..+....+.|.  .++...+.+||...| .-|+.-|.-+..++. -+.+....+...--.--+..++ ..+  +.+-..
T Consensus       310 ~av~s~L~~~G~d~~~~~L~DGSGLSr~n-lv~p~tl~q~L~~~aGP~~~~~~~~~~~LP~AG~~Gtlv~~Rl~~~~~~~  388 (427)
T TIGR00666       310 EAVKSILQEAGVDTGNVILRDGSGLSRHN-LVTPKTLVQLLQYIAGPDQSAKLAYLDSLPVAGRSGTLVGERLLDGLKDT  388 (427)
T ss_pred             HHHHHHHHHCCCEECCEEEEECCCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99987544404000352787145525445-66499999999985388871135688734446899840478888766177


Q ss_pred             -CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE
Q ss_conf             -687005652242333717999999-78979999981
Q gi|254780698|r  234 -MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM  268 (336)
Q Consensus       234 -~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl  268 (336)
                       ..|-.-.|||. -.+=++|++.++ +.|+++..|.+
T Consensus       389 p~~GkvrAKTGS-L~gV~sL~G~~t~~~G~~~aF~~~  424 (427)
T TIGR00666       389 PLVGKVRAKTGS-LTGVYSLAGYVTNASGKKLAFSFL  424 (427)
T ss_pred             CCCCEEEEECCC-CCEEEEEEEEEECCCCCEEEEEEE
T ss_conf             987437752233-421323477788368988999888


No 25 
>COG1680 AmpC Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]
Probab=95.46  E-value=0.0083  Score=35.66  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             CC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             88-813879999999999755589885541115
Q gi|254780698|r   75 RY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV  106 (336)
Q Consensus        75 ~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~i  106 (336)
                      .+ .||+||.+|+.+++..+++|++++|++|..
T Consensus        88 ~f~i~S~TK~~ta~~i~~LveeG~l~lddpV~~  120 (390)
T COG1680          88 VFRIASVTKSFTATLLGKLVEEGKLDLDDPVSK  120 (390)
T ss_pred             EEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             467510179999999999998699761044887


No 26 
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=94.87  E-value=0.27  Score=26.66  Aligned_cols=204  Identities=14%  Similarity=0.067  Sum_probs=118.8

Q ss_pred             CEEEEEC-CCCEEEEE-CCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH
Q ss_conf             1999998-89628311-3699888-8138799999999997555898855411153676124544322578856883024
Q gi|254780698|r   55 SSIVIDV-NKNQMTGF-KQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG  131 (336)
Q Consensus        55 sAiv~D~-~tG~ILy~-Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL  131 (336)
                      +-+++|. .++.++|. ...++|+ |||+=|+--+|+.++.   |.++.++...     ....+-...+   +...-+.-
T Consensus        31 tfvlyd~~~~~~~i~n~~~~~qr~sPaSTfKI~~sLigld~---Gvl~d~~~~v-----~~wd~~~~~f---~~W~qd~d   99 (254)
T COG2602          31 TFVLYDDKAMGYSIYNEERAKQRFSPASTFKIALSLIGLDA---GVLSDEDTPV-----LLWDGKIRWF---ESWNQDQD   99 (254)
T ss_pred             EEEEEECCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHCCC---CCCCCCCCEE-----EEECCCCCCC---HHHCCCCC
T ss_conf             49999754563246333553686684689999999741145---7313587655-----5107775634---11215588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC-CCCCCCCHHHHHHHHHHHCCC-CEEEE
Q ss_conf             5788998777776545542010057899988876887266122200245433-334453013455555420136-20467
Q gi|254780698|r  132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-DKNQITTARDQAILGILLRKN-FPQYY  209 (336)
Q Consensus       132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~-~~~~~tta~Dla~l~~~~~~~-~p~~~  209 (336)
                      +...|..|.+-.-..+++.++-      +.|-++-++||.-|-....+.|.= ...-.-|+..-....+.+.++ .|.-.
T Consensus       100 l~~amk~Svvwy~q~iar~ig~------ek~~aylk~l~YGN~dis~~~~~Wl~~sLkIS~~EQv~fL~rL~~~~LPFs~  173 (254)
T COG2602         100 LTSAMKNSVVWYYQEIARAIGR------EKMAAYLKQLGYGNQDISGNPGFWLESSLKISPKEQVIFLRRLAQNELPFSA  173 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCCHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf             8999999878899999998768------9999998875226311058998111366522779999999999746699887


Q ss_pred             EEEEEEEEEECCEEEEEECHHCCCC-CCCEEEEECCCCCCC---CEEEEEEEECCEEEEEEEECC----CCHHHHHHHHH
Q ss_conf             7611565434786997210102576-870056522423337---179999997897999998179----98789999999
Q gi|254780698|r  210 KYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSG---FNIVTSLRYKDDPIVAVVMGM----PTSQERDQKAL  281 (336)
Q Consensus       210 ~~~s~~~~~~~~~~~~n~N~lL~~~-~g~~G~KTG~T~~AG---~clv~~a~~~g~~lI~Vvlg~----~s~~~R~~~~~  281 (336)
                      +..          .....--++... .+..-+|||+....+   .=+|+.+++++..++...+=.    ++...|-.-..
T Consensus       174 ~a~----------~~v~~~m~~~~~~~~~l~GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~nld~~~~~d~~k~~~i~~  243 (254)
T COG2602         174 KAQ----------DLVKAIMILERGPNWELHGKTGTGIVNTKNLGWFVGWVETNENKYVFATNLDIDGNEDGPKREEITE  243 (254)
T ss_pred             HHH----------HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf             899----------9998777013089769984044465378875059999996893799999612577775467788999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780698|r  282 ELIT  285 (336)
Q Consensus       282 ~Ll~  285 (336)
                      +.|.
T Consensus       244 ~~Lk  247 (254)
T COG2602         244 AILK  247 (254)
T ss_pred             HHHH
T ss_conf             9998


No 27 
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK.    D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis.
Probab=94.65  E-value=0.25  Score=26.88  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9628311369988-881387999999999975558988554111
Q gi|254780698|r   63 KNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIP  105 (336)
Q Consensus        63 tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~  105 (336)
                      +|++||+.+++.+ .|||.-||+||..++-.+.+ +....+.|.
T Consensus         1 ~~q~~~~y~~d~~~~PASt~K~lTAaAAL~~Lg~-~frFtT~v~   43 (427)
T TIGR00666         1 TGQPLYQYSGDTFMLPASTQKLLTAAAALLELGP-NFRFTTEVV   43 (427)
T ss_pred             CCCEEEECCCCEEECCCCCHHHHHHHHHHHHCCC-CCEEEEEEE
T ss_conf             9843343068855203246278999999974393-751799997


No 28 
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=93.83  E-value=0.45  Score=25.30  Aligned_cols=222  Identities=15%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             CCCEEEEECCCCEEEEE-C--C--C----------C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             63199999889628311-3--6--9----------9-8888138799999999997555898855411153676124544
Q gi|254780698|r   53 KYSSIVIDVNKNQMTGF-K--Q--D----------E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS  116 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy~-K--n--~----------~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s  116 (336)
                      ..+++++|..||+|+.- -  +  +          . .|-|.|+-|-..-..   ++++|.+..++.+.-....  .++ 
T Consensus       300 ~~A~vviD~~tg~V~A~VG~~d~~~~~~~g~vd~~~A~RqPGStlKPfvYa~---Ale~G~i~p~s~l~D~P~~--~g~-  373 (770)
T PRK11240        300 SLAMIVVDHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGL---ALDDGLIHPASLLQDVPRR--TGD-  373 (770)
T ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HHHCCCCCCCCEECCCCCC--CCC-
T ss_conf             6359999789980899983766675444676330203568962388999999---9976999988784168701--488-


Q ss_pred             CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE-ECCCCCC--CCCCCCCHHH
Q ss_conf             322578856883024578899877777654554201005789998887688726612220-0245433--3344530134
Q gi|254780698|r  117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY-KNASGLH--DKNQITTARD  193 (336)
Q Consensus       117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f-~np~Gl~--~~~~~tta~D  193 (336)
                      ...-+-+..+.-.--++-.+..|-|-.|+-+.+.++-  +.|.+    .++.+|+....- ..-.||.  -.+.-.|..|
T Consensus       374 y~P~Nfd~~~~G~vt~r~AL~~SlNipAV~ll~~~G~--~~~~~----~l~~~Gi~~~l~~~~~~~LslaLGg~evtl~e  447 (770)
T PRK11240        374 YRPGNFDSGFHGPVSMSEALVRSLNLPAVQVLEAYGP--KRFAA----KLRNVGLPLYLPAGAAPNLSLILGGAGARLED  447 (770)
T ss_pred             CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCH--HHHHH----HHHHCCCCCCCCCCCCCCCCEECCCCCCCHHH
T ss_conf             6870278872061109999986547999999998796--99999----99973997567877789853331576888999


Q ss_pred             HHHHHHHHCCC----CEEEEEEEEEEEEE-EC------------CEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEE
Q ss_conf             55555420136----20467761156543-47------------869972101025768700565224233371799999
Q gi|254780698|r  194 QAILGILLRKN----FPQYYKYFSIRKFR-YR------------NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL  256 (336)
Q Consensus       194 la~l~~~~~~~----~p~~~~~~s~~~~~-~~------------~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a  256 (336)
                      |+..-..+...    .+.+..-....+.. +.            +..-.....-+.. ..-...|||+|..  +-=...+
T Consensus       448 La~aYa~~An~G~~~~~~~~~~~~~~~~~v~s~~aa~~~~~iL~~~~r~~~~~~l~~-~~pvAgKTGTS~g--~RDaWfv  524 (770)
T PRK11240        448 MAAAYSAFARHGKAAKLRLQPDDPLLERPLMSPGAAWIIRRIMADEAQPLPDAALPR-VVPLAWKTGTSYG--YRDAWAI  524 (770)
T ss_pred             HHHHHHHHHCCCEECCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCC-CCCCEECCCCCCC--CCCEEEE
T ss_conf             999999997798433517715886332136888889999999875044430110023-7762443467888--7333898


Q ss_pred             EECCEEEEEEEECCCCHHHH-----HHHHHHHHHHHHC
Q ss_conf             97897999998179987899-----9999999999840
Q gi|254780698|r  257 RYKDDPIVAVVMGMPTSQER-----DQKALELITSFLE  289 (336)
Q Consensus       257 ~~~g~~lI~Vvlg~~s~~~R-----~~~~~~Ll~~~f~  289 (336)
                      =-.++-.++|=+|-++..-+     ...+.-|+...|+
T Consensus       525 G~tp~ytvgVWvGn~Dg~p~~~~~G~~~AaPllf~i~~  562 (770)
T PRK11240        525 GVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNN  562 (770)
T ss_pred             EECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             63598599999868999938774060235879999999


No 29 
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=91.05  E-value=1.1  Score=23.11  Aligned_cols=135  Identities=13%  Similarity=0.051  Sum_probs=80.6

Q ss_pred             CCCEEEEECCCCEEEE----------ECC-CC--CCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf             6319999988962831----------136-99--888813879999999999755--58988554111536761245443
Q gi|254780698|r   53 KYSSIVIDVNKNQMTG----------FKQ-DE--PRYPASLTKMMTLYIIFEYLQ--SKKLHLNTQIPVSKTAATQNPSK  117 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy----------~Kn-~~--~~~PASlTKlMTa~v~le~i~--~g~i~~~~~v~is~~a~~~~~s~  117 (336)
                      ..+.+++|..||.|..          +=| +.  .|-|.|+-|..+.|.++++-.  ...+..|.++++.   ...+...
T Consensus       327 q~a~v~~d~~tG~V~A~VGg~d~~~~~fNrAt~a~Rq~GSt~KP~~~~~a~~~~~~~~~~~~~d~p~~~~---~~~p~N~  403 (661)
T COG0744         327 QAALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTYG---NWSPKNY  403 (661)
T ss_pred             EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCEECC---CCCCEEC
T ss_conf             3679999668985899976888986653300003678852588999999997389997744526872237---8887466


Q ss_pred             CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             22578856883024578899877777654554201005789998887688726612220024543333445301345555
Q gi|254780698|r  118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL  197 (336)
Q Consensus       118 ~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l  197 (336)
                      .+-..|..+++    +-.+..|.|-.++-+...++-      +..-+.++++|+....- ...++.....-.|..+|+..
T Consensus       404 ~~~y~~g~vtl----~~ALa~S~Nipav~l~~~vG~------~~~~~~~~~lGi~~~~~-~~~s~~lg~~~~sp~~ma~a  472 (661)
T COG0744         404 DGRYEGGSVTL----REALATSLNIPAVRLLQKVGL------DKVVDTAKKLGINSPLV-PGPSLALGASEVSPLEMASA  472 (661)
T ss_pred             CCCCCCCEECH----HHHHHCCCCHHHHHHHHHHCH------HHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHH
T ss_conf             78656852619----999871999999999998674------89999999829988888-86522268888989999998


Q ss_pred             HHHH
Q ss_conf             5420
Q gi|254780698|r  198 GILL  201 (336)
Q Consensus       198 ~~~~  201 (336)
                      -...
T Consensus       473 Y~~f  476 (661)
T COG0744         473 YATF  476 (661)
T ss_pred             HHHH
T ss_conf             9999


No 30 
>pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Probab=89.18  E-value=0.26  Score=26.73  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             813879999999999755589885541115
Q gi|254780698|r   77 PASLTKMMTLYIIFEYLQSKKLHLNTQIPV  106 (336)
Q Consensus        77 PASlTKlMTa~v~le~i~~g~i~~~~~v~i  106 (336)
                      |||++||+|++.+|+.+.. ...+.+++-.
T Consensus         1 PAS~~Kl~TtaaAL~~LG~-d~rf~T~v~~   29 (383)
T pfam02113         1 PASTQKLITAAAALPVLGA-NFRFTTEVAA   29 (383)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CCEEEEEEEE
T ss_conf             9688999999999985399-9759889997


No 31 
>KOG4038 consensus
Probab=51.43  E-value=11  Score=17.14  Aligned_cols=36  Identities=11%  Similarity=0.139  Sum_probs=21.0

Q ss_pred             EEEEECCCCEEEEECCCCCCCC-----CHH-HHHHHHHHHHH
Q ss_conf             9999988962831136998888-----138-79999999999
Q gi|254780698|r   56 SIVIDVNKNQMTGFKQDEPRYP-----ASL-TKMMTLYIIFE   91 (336)
Q Consensus        56 Aiv~D~~tG~ILy~Kn~~~~~P-----ASl-TKlMTa~v~le   91 (336)
                      -++-|++||+|||+.+.+-..|     |-+ -|++-+-.+-.
T Consensus        20 mnlrdaetgkilwq~ted~s~p~~ehearvpkkilkcravsr   61 (150)
T KOG4038          20 MNLRDAETGKILWQETEDFSAPDQEHEARVPKKILKCRAVSR   61 (150)
T ss_pred             EEEECCCCCCEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf             673025446165402555578860322106588875676664


No 32 
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=51.02  E-value=7.6  Score=17.98  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCEEE
Q ss_conf             99981799878999999999999840-15403432047762001
Q gi|254780698|r  264 VAVVMGMPTSQERDQKALELITSFLE-KKTLKHQQTHRKDNLSS  306 (336)
Q Consensus       264 I~Vvlg~~s~~~R~~~~~~Ll~~~f~-~~~~~~~~~~~~~~~~~  306 (336)
                      ++|+|||.|++.--+++.+.|+. |+ .|..+-...+.+|....
T Consensus         1 V~iIMGS~SD~~~m~~a~~~L~~-fgi~~e~~V~SAHRTP~~~~   43 (159)
T TIGR01162         1 VGIIMGSDSDLETMKKAAEILEE-FGIPYELRVVSAHRTPELMF   43 (159)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHH
T ss_conf             96853672547899999999985-59966789860677808899


No 33 
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820    This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=41.26  E-value=18  Score=15.74  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=41.4

Q ss_pred             CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHH--HHHHHHHHCCCCCEE
Q ss_conf             768700565224233371799999978979999981799878999999--999999840154034
Q gi|254780698|r  233 KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA--LELITSFLEKKTLKH  295 (336)
Q Consensus       233 ~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~--~~Ll~~~f~~~~~~~  295 (336)
                      +.+|+.-==-|--+-|+---..--+-.|.++|+||=|++++=.|..|.  +.|+..|.++|-+..
T Consensus       273 n~EgiVaEPAGALSiAAL~~~~r~ei~gKTVVC~vSGGNNDi~R~~Ei~eRsl~y~GLKhYFiv~  337 (415)
T TIGR02079       273 NLEGIVAEPAGALSIAALEELSREEIKGKTVVCVVSGGNNDIERTEEIRERSLLYEGLKHYFIVR  337 (415)
T ss_pred             HCCCEEEECCHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             16826981513667999875122004697279995277575331367898888731770368752


No 34 
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=38.82  E-value=22  Score=15.25  Aligned_cols=11  Identities=18%  Similarity=0.359  Sum_probs=3.9

Q ss_pred             HHHHHHHHCCC
Q ss_conf             88768872661
Q gi|254780698|r  162 MSNKAKKIGMQ  172 (336)
Q Consensus       162 MN~~A~~lGl~  172 (336)
                      +++.-++-|+.
T Consensus        77 V~etfk~nGl~   87 (215)
T pfam05643        77 VEETFKQNGLT   87 (215)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999975999


No 35 
>pfam01011 PQQ PQQ enzyme repeat. The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Probab=36.96  E-value=27  Score=14.73  Aligned_cols=21  Identities=5%  Similarity=-0.070  Sum_probs=16.2

Q ss_pred             CEEEEECCCCEEEEECCCCCC
Q ss_conf             199999889628311369988
Q gi|254780698|r   55 SSIVIDVNKNQMTGFKQDEPR   75 (336)
Q Consensus        55 sAiv~D~~tG~ILy~Kn~~~~   75 (336)
                      .-..+|++||+++++.+....
T Consensus        11 ~l~AlD~~tGk~~W~~~~~~~   31 (38)
T pfam01011        11 RLYALDAKTGKVLWKFKTGGP   31 (38)
T ss_pred             EEEEEECCCCCEEEEEECCCC
T ss_conf             699988778827899975996


No 36 
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.33  E-value=28  Score=14.60  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=17.4

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             999981799878999999999999
Q gi|254780698|r  263 IVAVVMGMPTSQERDQKALELITS  286 (336)
Q Consensus       263 lI~Vvlg~~s~~~R~~~~~~Ll~~  286 (336)
                      .++|+||++|++.--+++.+.|+.
T Consensus         4 ~V~IIMGS~SD~~~mk~Aa~~L~~   27 (162)
T COG0041           4 KVGIIMGSKSDWDTMKKAAEILEE   27 (162)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             189995570239999999999998


No 37 
>TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927    This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD..
Probab=34.73  E-value=26  Score=14.85  Aligned_cols=224  Identities=21%  Similarity=0.220  Sum_probs=118.6

Q ss_pred             CCCEEEEECCCCEEEEE-------------------------------CC-C-CCCC-CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             63199999889628311-------------------------------36-9-9888-8138799999999997555898
Q gi|254780698|r   53 KYSSIVIDVNKNQMTGF-------------------------------KQ-D-EPRY-PASLTKMMTLYIIFEYLQSKKL   98 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy~-------------------------------Kn-~-~~~~-PASlTKlMTa~v~le~i~~g~i   98 (336)
                      ..++||||.++|+||.=                               .| . ...| |-|+=||.|+..++++   |-.
T Consensus       248 g~~i~vMnpknGeILGM~nrP~ydpn~p~~~s~~~~~kdesa~LQ~~WRN~~v~d~yEPGS~FKiiT~~AA~~e---g~v  324 (660)
T TIGR02214       248 GVSIIVMNPKNGEILGMSNRPSYDPNDPRDKSPEVKRKDESAKLQKSWRNRVVSDAYEPGSIFKIITSSAAMEE---GIV  324 (660)
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHC---CCE
T ss_conf             58999976999717652067887877743037436054203688650188501122169847799999999732---740


Q ss_pred             CCCCCCCCCHHHHCCCCC--CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             855411153676124544--322578856883024578899877777654554201005789998887688726612220
Q gi|254780698|r   99 HLNTQIPVSKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIY  176 (336)
Q Consensus        99 ~~~~~v~is~~a~~~~~s--~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f  176 (336)
                      .+++..--..-+..+++.  +++=..|+-   .+-..-.+-.|=|-+=+-|++.++-      +.+|++-+..|     |
T Consensus       325 ~le~d~FYd~G~~~vg~~~~kCWK~~GHG---~qtF~~vv~NSCN~GF~elG~~LG~------~~L~~Yi~~FG-----F  390 (660)
T TIGR02214       325 KLEKDKFYDDGSATVGGKKIKCWKPGGHG---SQTFLEVVQNSCNVGFIELGERLGA------EKLNEYIKKFG-----F  390 (660)
T ss_pred             ECCCCEEECCCEEEECCCEEEEECCCCCC---CCCHHHHHHCCCCHHHHHHHHHCCH------HHHHHHHHHCC-----C
T ss_conf             00365010784144348266767688695---5464787532777789988554076------68999998428-----9


Q ss_pred             ECCCCCCCC---------CCCCCHHHHHHHHH----------------------HHCCCCEEEEEEEEEEEEEEC-----
Q ss_conf             024543333---------44530134555554----------------------201362046776115654347-----
Q gi|254780698|r  177 KNASGLHDK---------NQITTARDQAILGI----------------------LLRKNFPQYYKYFSIRKFRYR-----  220 (336)
Q Consensus       177 ~np~Gl~~~---------~~~tta~Dla~l~~----------------------~~~~~~p~~~~~~s~~~~~~~-----  220 (336)
                      -.++|.+-+         -..-.+=|+|.++-                      .+++  |.+.+-.+....+.+     
T Consensus       391 G~~tGIdL~GEA~GIl~n~~~v~pvdlAT~SfGQ~n~v~~iQ~~~A~~AvaNGG~L~~--P~i~~e~~d~~~NG~~~v~~  468 (660)
T TIGR02214       391 GSKTGIDLPGEAAGILKNLEKVGPVDLATISFGQANTVTPIQLMTAVNAVANGGKLIQ--PHIMKEISDKENNGRKVVDK  468 (660)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCC--HHHHHHHCCCCCCCCEEEEE
T ss_conf             8768866677410334137655612254331052000477899999998751665661--33122021757895158875


Q ss_pred             ---CEEE------EEECH---HC--------CCCCC----CEEEEECCCCCC-----CC-------EEEEEEE-ECCEEE
Q ss_conf             ---8699------72101---02--------57687----005652242333-----71-------7999999-789799
Q gi|254780698|r  221 ---NRII------TNHNK---LL--------NKMHN----IDGIKTGYTRNS-----GF-------NIVTSLR-YKDDPI  263 (336)
Q Consensus       221 ---~~~~------~n~N~---lL--------~~~~g----~~G~KTG~T~~A-----G~-------clv~~a~-~~g~~l  263 (336)
                         ....      ..+.+   .|        +..-+    -.|+|||+-.+-     ||       .||+.|= .|-.=.
T Consensus       469 ~f~P~~~~~vv~~~~~~~l~~~LE~vVs~GsGk~AfIdGyrvGGKTGTAqKv~P~~G~Y~~g~YivSFvG~APa~dP~v~  548 (660)
T TIGR02214       469 KFEPEVKRKVVDKETTEKLRLALEKVVSKGSGKDAFIDGYRVGGKTGTAQKVKPEDGGYLEGEYIVSFVGFAPADDPEVA  548 (660)
T ss_pred             EECCCEEEEECCHHHHHHHHHHHHCEEECCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEE
T ss_conf             30770123532677899998864114514777561103469577304534447888934148668998642788988479


Q ss_pred             EEEEECCCCHHHHHHH------HHHHHHHHHCCCCCEE
Q ss_conf             9998179987899999------9999999840154034
Q gi|254780698|r  264 VAVVMGMPTSQERDQK------ALELITSFLEKKTLKH  295 (336)
Q Consensus       264 I~Vvlg~~s~~~R~~~------~~~Ll~~~f~~~~~~~  295 (336)
                      +.|+...|...+.|.-      ..++++-.|+....++
T Consensus       549 ~~V~vD~P~~~~~FGG~vAAPv~~~v~~d~l~~lGi~P  586 (660)
T TIGR02214       549 VLVVVDNPKGVEQFGGLVAAPVVGEVFNDILNYLGIKP  586 (660)
T ss_pred             EEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHCCCCC
T ss_conf             99998679897201344874146889998887557689


No 38 
>TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037   The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=32.75  E-value=15  Score=16.19  Aligned_cols=129  Identities=16%  Similarity=0.104  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHH-HHHHHHCCCCEEEEEEEEEEE------------EEECCE
Q ss_conf             7899988876887266122200245433334453013455-555420136204677611565------------434786
Q gi|254780698|r  156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRK------------FRYRNR  222 (336)
Q Consensus       156 ~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla-~l~~~~~~~~p~~~~~~s~~~------------~~~~~~  222 (336)
                      .-|.+.+-+..++.|..--.++-|.|-..+. ..+..++. .|..   .+.+.-.-+...=-            .-.|++
T Consensus        38 ~~~~~~~~~~~~~~g~~v~~~~~p~GE~~K~-l~~~~~l~~~L~~---~~~~R~~~i~~~GGGvvgDlaGFvAaty~RGi  113 (361)
T TIGR01357        38 DLYAEKLLEALQSAGFNVLVLTVPDGEESKS-LETVQRLYDQLLE---AGLDRSSTIIALGGGVVGDLAGFVAATYMRGI  113 (361)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHH---CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             8888899999985387526887078987454-8889999999996---58895647888545377878999999996155


Q ss_pred             EEEEE-CHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             99721-0102576870056522423337179999997897-999998179987899999999999984
Q gi|254780698|r  223 IITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMGMPTSQERDQKALELITSFL  288 (336)
Q Consensus       223 ~~~n~-N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg~~s~~~R~~~~~~Ll~~~f  288 (336)
                      .+.+= -.||-..+-.+|+|||---..|-|+|+++-+=.- =+=.-+|-+=.+.+-..-+...+-|||
T Consensus       114 ~~iqvPTTLLAmVDsSvGGKtGiN~~~gKNlIGaFy~P~~V~~D~~~L~TLP~~E~~~G~AEviK~g~  181 (361)
T TIGR01357       114 RFIQVPTTLLAMVDSSVGGKTGINFPLGKNLIGAFYQPKAVLIDPDFLKTLPERELRSGMAEVIKHGL  181 (361)
T ss_pred             CEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHCCCCHHHHHCCCHHHHHHHH
T ss_conf             82641404777765303764111378886304211377402650144158846888644357788875


No 39 
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=32.71  E-value=32  Score=14.24  Aligned_cols=42  Identities=24%  Similarity=0.371  Sum_probs=35.3

Q ss_pred             CCCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             76319999988962831136998888-1387999999999975
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL   93 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i   93 (336)
                      +..-+|-+=...|+++-+-+.+.++. =|++|+.+..++++..
T Consensus        38 ~~~fgiai~t~dG~~~~aGD~d~~FsiqSISKvf~l~lal~~~   80 (309)
T COG2066          38 PDLFGIAIVTVDGQVYSAGDADERFSIQSISKVFTLALALEDI   80 (309)
T ss_pred             HHHCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf             0470699992599599716767614432429999999999866


No 40 
>PRK00971 glutaminase; Provisional
Probab=30.58  E-value=35  Score=14.03  Aligned_cols=40  Identities=13%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             319999988962831136998888-1387999999999975
Q gi|254780698|r   54 YSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL   93 (336)
Q Consensus        54 ~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i   93 (336)
                      .=+|-+=.-.|+++..-+.+.+++ -|++|++|..++++..
T Consensus        39 ~fgiai~t~dG~~~~~GD~~~~FsiQSisK~f~~~lal~~~   79 (308)
T PRK00971         39 KLGIAVCTLDGEIYSAGDADERFSIQSISKVFSLTLALQHY   79 (308)
T ss_pred             HCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             74899994599889557878853289889999999999887


No 41 
>pfam03413 PepSY Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.
Probab=30.31  E-value=35  Score=14.00  Aligned_cols=14  Identities=14%  Similarity=0.266  Sum_probs=9.4

Q ss_pred             EEEEECCCCEEEEE
Q ss_conf             99999889628311
Q gi|254780698|r   56 SIVIDVNKNQMTGF   69 (336)
Q Consensus        56 Aiv~D~~tG~ILy~   69 (336)
                      -+.+|+.||+||..
T Consensus        45 ~~~VDa~tG~vl~~   58 (59)
T pfam03413        45 EVYIDAYTGEVLKV   58 (59)
T ss_pred             EEEEECCCCEEEEE
T ss_conf             99998998718862


No 42 
>pfam04960 Glutaminase Glutaminase. This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2.
Probab=28.29  E-value=38  Score=13.79  Aligned_cols=42  Identities=19%  Similarity=0.313  Sum_probs=32.0

Q ss_pred             CCCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             76319999988962831136998888-1387999999999975
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL   93 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i   93 (336)
                      |..-+|-+=...|+++..-+.+.+++ -|++|++|..++++..
T Consensus        15 p~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~   57 (286)
T pfam04960        15 PDLLGIAVVTVDGQVHSAGDADEPFSLQSISKVFTLALALGDL   57 (286)
T ss_pred             HHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             0783899990799689557889977359999999999999877


No 43 
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=26.70  E-value=41  Score=13.62  Aligned_cols=233  Identities=17%  Similarity=0.143  Sum_probs=139.5

Q ss_pred             CCEEEEECCCCEEEE---EC-------C-C-CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC-
Q ss_conf             319999988962831---13-------6-9-98-888138799999999997555898855411153676124544322-
Q gi|254780698|r   54 YSSIVIDVNKNQMTG---FK-------Q-D-EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-  119 (336)
Q Consensus        54 ~sAiv~D~~tG~ILy---~K-------n-~-~~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~-  119 (336)
                      .|.||+|..||||.+   ++       | + +. |..-||.|=.|=+++|..=  .+-.+++.|.-.+-+-.......+ 
T Consensus       414 aAmvv~D~~~GEvrA~vGg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P--~~Y~LnTw~~d~P~~ik~~~G~~W~  491 (742)
T TIGR02071       414 AAMVVVDRFTGEVRALVGGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQP--DKYRLNTWIEDQPLSIKLSNGQVWS  491 (742)
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             77889836887078887587887560103641637764324368999972789--7311466423664477568887246


Q ss_pred             -CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEE-CCCCCCCCCCCCCHHHHHHH
Q ss_conf             -5788568830245788998777776545542010057899988876887266122200-24543333445301345555
Q gi|254780698|r  120 -LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK-NASGLHDKNQITTARDQAIL  197 (336)
Q Consensus       120 -l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~-np~Gl~~~~~~tta~Dla~l  197 (336)
                       -+...++.=+=+|.-+|+.|=|-+.+.|+-.+|=+      ..-+.-..||..+.... +|+=+- ..---|++++|.+
T Consensus       492 P~N~D~~~~g~V~L~dALa~S~N~pTV~lGm~vGl~------~V~~t~~~LG~~k~~i~~~PsmlL-GA~~ltP~evaq~  564 (742)
T TIGR02071       492 PRNYDRRYSGTVMLYDALARSLNIPTVNLGMKVGLD------KVSQTLKKLGINKDEIPPVPSMLL-GAISLTPYEVAQL  564 (742)
T ss_pred             CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHCCCCCCCCCCCHHHH-CCCCCCHHHHHHH
T ss_conf             514774225626467898765317678864631767------899999982877120476633552-1136687899989


Q ss_pred             HHHHCCC---CE-------------EEEEEEEEEEEE--------------ECCEEEEEECHHCC-CCC--CCEEEEECC
Q ss_conf             5420136---20-------------467761156543--------------47869972101025-768--700565224
Q gi|254780698|r  198 GILLRKN---FP-------------QYYKYFSIRKFR--------------YRNRIITNHNKLLN-KMH--NIDGIKTGY  244 (336)
Q Consensus       198 ~~~~~~~---~p-------------~~~~~~s~~~~~--------------~~~~~~~n~N~lL~-~~~--g~~G~KTG~  244 (336)
                      -.-+..-   -|             .+++...+.+--              .......-|-+-|. .++  -...+|||+
T Consensus       565 YQtlAsgG~~~pL~avRSVl~~dG~vLy~~~~~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGT  644 (742)
T TIGR02071       565 YQTLASGGERAPLSAVRSVLDEDGKVLYQSLPQAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGT  644 (742)
T ss_pred             HHHHHCCCCCCCCHHHHHEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf             97762577554310220101147763301788745457742035776777877542012011001004666565456365


Q ss_pred             CCCCCCE-EEEEEEECCEEEEEEEECCCC-HHHH---HHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             2333717-999999789799999817998-7899---9999999999840154034320
Q gi|254780698|r  245 TRNSGFN-IVTSLRYKDDPIVAVVMGMPT-SQER---DQKALELITSFLEKKTLKHQQT  298 (336)
Q Consensus       245 T~~AG~c-lv~~a~~~g~~lI~Vvlg~~s-~~~R---~~~~~~Ll~~~f~~~~~~~~~~  298 (336)
                      |++..=+ |++   -||..+-+|=+|=++ .+++   -.-|..+..-+|++-.-.+...
T Consensus       645 tNd~RDsWF~G---~dG~~~~~~W~GRD~N~~TkLtGAsGAl~vy~~yL~~~~P~~L~l  700 (742)
T TIGR02071       645 TNDSRDSWFVG---IDGKEVTIVWLGRDDNGPTKLTGASGALQVYKRYLKYQTPEPLLL  700 (742)
T ss_pred             CCCCCCEEEEE---ECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             68885104776---438789999985278988476453158999999985258874233


No 44 
>pfam05351 GMP_PDE_delta GMP-PDE, delta subunit. GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport.
Probab=25.72  E-value=42  Score=13.58  Aligned_cols=17  Identities=6%  Similarity=-0.136  Sum_probs=13.1

Q ss_pred             EEEEECCCCEEEEECCC
Q ss_conf             99999889628311369
Q gi|254780698|r   56 SIVIDVNKNQMTGFKQD   72 (336)
Q Consensus        56 Aiv~D~~tG~ILy~Kn~   72 (336)
                      -.+=|++||+|||+-..
T Consensus        14 f~iRD~etG~vlfe~~~   30 (156)
T pfam05351        14 FKIRDAETGKVLFEIAK   30 (156)
T ss_pred             EEEEECCCCEEEEEECC
T ss_conf             99861777818998527


No 45 
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=25.45  E-value=25  Score=14.88  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEEEEEEEEE--------E---EE-ECCEEE
Q ss_conf             99988876887266122200245433334453013455555420136-20467761156--------5---43-478699
Q gi|254780698|r  158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN-FPQYYKYFSIR--------K---FR-YRNRII  224 (336)
Q Consensus       158 Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~-~p~~~~~~s~~--------~---~~-~~~~~~  224 (336)
                      +.+......+..|..-.+++-|.|-..++- .+   +..+...++.. .+.---+...=        -   -+ .|+..+
T Consensus        48 y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl-~~---~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~f  123 (360)
T COG0337          48 YLEKLLATLEAAGVEVDSIVLPDGEEYKSL-ET---LEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRF  123 (360)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCH-HH---HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf             799999999855860579995798450559-99---99999999975999886799978758777778999999708976


Q ss_pred             EE-ECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEE-EECCCCHHHHHHHHHHHHHHHH
Q ss_conf             72-1010257687005652242333717999999789799999-8179987899999999999984
Q gi|254780698|r  225 TN-HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV-VMGMPTSQERDQKALELITSFL  288 (336)
Q Consensus       225 ~n-~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~V-vlg~~s~~~R~~~~~~Ll~~~f  288 (336)
                      .+ --.||-..+-.+|+|||--...|-|+|+++-+=..=+|-. +|..=...+--.-+...+-|++
T Consensus       124 iqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~  189 (360)
T COG0337         124 IQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGL  189 (360)
T ss_pred             EECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             755632987762345643453788876226515698679980588641998899876999988764


No 46 
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=25.33  E-value=42  Score=13.54  Aligned_cols=69  Identities=17%  Similarity=0.103  Sum_probs=41.2

Q ss_pred             CCEEEEEE-CHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEE-EECCCCHHHHHHHHHHHHHHHH
Q ss_conf             78699721-010257687005652242333717999999789799999-8179987899999999999984
Q gi|254780698|r  220 RNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAV-VMGMPTSQERDQKALELITSFL  288 (336)
Q Consensus       220 ~~~~~~n~-N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~V-vlg~~s~~~R~~~~~~Ll~~~f  288 (336)
                      +++.+.+- -.||...+-.+|+|||.--..|-|+++++..-..-+|-. .|..=...+.-.-...++-+++
T Consensus       262 RGi~~i~iPTTLLa~VDssvGGKtgIN~~~gKNliG~F~~P~~V~iD~~~L~TLp~re~~~G~aEviK~g~  332 (488)
T PRK13951        262 RGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTI  332 (488)
T ss_pred             CCCCEEECCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCEEEECHHHHCCCCHHHHHCCHHHHHHHHH
T ss_conf             49987875405998776302566057689984658987698367870777656999999747999998664


No 47 
>COG3212 Predicted membrane protein [Function unknown]
Probab=24.62  E-value=44  Score=13.45  Aligned_cols=33  Identities=9%  Similarity=0.068  Sum_probs=15.0

Q ss_pred             EEEEECCCCEEEEECCCC----CC---CCCHHHHHHHHHH
Q ss_conf             999998896283113699----88---8813879999999
Q gi|254780698|r   56 SIVIDVNKNQMTGFKQDE----PR---YPASLTKMMTLYI   88 (336)
Q Consensus        56 Aiv~D~~tG~ILy~Kn~~----~~---~PASlTKlMTa~v   88 (336)
                      -+-.|.+++++....++.    ..   .|=|..+.+..-+
T Consensus        54 e~~~d~~~~d~~~~~~~~~~~~~~~~~~iis~~ea~~iAl   93 (144)
T COG3212          54 EVEADSDGDDDDMDQDAKTKEVQKGESTIISLEEAKEIAL   93 (144)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             2355257832545436765544058764469999999999


No 48 
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886    Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=22.44  E-value=17  Score=15.83  Aligned_cols=52  Identities=17%  Similarity=0.161  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf             5788568830245788998777776545542010057899988876887266
Q gi|254780698|r  120 LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM  171 (336)
Q Consensus       120 l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl  171 (336)
                      +-.|.-+||+|.+.+.--.||.+-.+-++..-.|+...++.--.+--++||.
T Consensus       265 lG~G~G~SV~EVi~a~~~vsG~~~~~~~~~RR~GDpa~l~Ada~ki~~~LgW  316 (341)
T TIGR01179       265 LGYGQGFSVLEVIEAFKKVSGKDIPVELAPRRPGDPASLVADASKIRRELGW  316 (341)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEECCHHHHHHHCCC
T ss_conf             2467541099999998661098137887687798845487386999975385


No 49 
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=21.78  E-value=50  Score=13.10  Aligned_cols=19  Identities=21%  Similarity=0.525  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             8899999999999862031
Q gi|254780698|r   28 IQLMGKILFLSIIMISMAS   46 (336)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~   46 (336)
                      .+....++++.++....++
T Consensus         4 ~k~~~~il~~al~l~GCs~   22 (200)
T COG3417           4 MKIYASILLLALFLSGCSS   22 (200)
T ss_pred             HHHHHHHHHHHHHHHHCCC
T ss_conf             7999999999999841136


No 50 
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537   Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=20.92  E-value=49  Score=13.17  Aligned_cols=94  Identities=12%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             HHHHCC---CCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEE-------ECHHC----
Q ss_conf             887266---1222002454333344530134555554201362046776115654347869972-------10102----
Q gi|254780698|r  166 AKKIGM---QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITN-------HNKLL----  231 (336)
Q Consensus       166 A~~lGl---~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n-------~N~lL----  231 (336)
                      .-.|||   .|+=|-...|.|-..-=-++..+|-+.+-.   ..+-+...++.-+.++...+..       |=-++    
T Consensus        77 tLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k---~~EnL~nl~t~~yDiNaa~~~e~YDFI~sTVVf~FL~a  153 (239)
T TIGR00477        77 TLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIK---EKENLDNLRTDVYDINAAALDEDYDFILSTVVFMFLEA  153 (239)
T ss_pred             EEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCC
T ss_conf             532688885378999761684101216866887599888---76267110046554335540127874210201221058


Q ss_pred             CCCCCCEEEEECCCCCCCCEEEEEEE-ECCEE
Q ss_conf             57687005652242333717999999-78979
Q gi|254780698|r  232 NKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDP  262 (336)
Q Consensus       232 ~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~  262 (336)
                      .+.|+++-=---+|...|||||.+|= -++-+
T Consensus       154 ~rvP~iIanMq~hT~pGGYNLIVaAMdTaDyP  185 (239)
T TIGR00477       154 ERVPEIIANMQEHTKPGGYNLIVAAMDTADYP  185 (239)
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf             87726788658746798732223321578888


No 51 
>pfam03482 SIC sic protein. Serotype M1 group A Streptococcus strains cause epidemic waves of human infections. This family includes the sic protein an extracellular protein (streptococcal inhibitor of complement) that inhibits human complement.
Probab=20.08  E-value=56  Score=12.83  Aligned_cols=32  Identities=16%  Similarity=0.341  Sum_probs=24.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             12343588999999999998620310014876
Q gi|254780698|r   22 IYIQRNIQLMGKILFLSIIMISMASELHAKPK   53 (336)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (336)
                      +.|+..|+.-+.+||.++..+++..+.+.+.+
T Consensus         1 MkIRNKI~nSktLLFTSLvAVALLGATQPvSA   32 (306)
T pfam03482         1 MNIRNKIENSKTLLFTSLVAVALLGATQPVSA   32 (306)
T ss_pred             CCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             94443100112567899999998447776524


Done!