HHsearch results for GI: 254780698 and protein with PDBid: 1alq_A

>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=99.92  E-value=1.8e-25  Score=169.60  Aligned_cols=190  Identities=17%  Similarity=0.058  Sum_probs=143.8

Q ss_pred             CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf             1999998896283113699888-813879999999999755589885541115367612454432257885688302457
Q gi|254780698|r   55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL  133 (336)
Q Consensus        55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~  133 (336)
                      +..++|.+||+++ +.|+++++ |||++|+|+++.+++.+++++  +++++++++.....++......+|+.++++||+.
T Consensus        61 gv~~~D~~tG~~~-~~n~d~~~~~ASt~Kl~~a~~~l~~v~~g~--ld~~v~i~~~~~~~~~~~~~~~~g~~~tl~dll~  137 (266)
T 1alq_A           61 GVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIE  137 (266)
T ss_dssp             EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHSSCGGG--TTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH
T ss_pred             EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH
T ss_conf             9999999999888-888998353478999999999999720478--7751675388863369731046897235999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC------CCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf             88998777776545542010057899988876887266122200245433------334453013455555420136204
Q gi|254780698|r  134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------DKNQITTARDQAILGILLRKNFPQ  207 (336)
Q Consensus       134 ~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~------~~~~~tta~Dla~l~~~~~~~~p~  207 (336)
                      ++++.|+|+|+.+|+++++|..     .||+.++++|++++++.+..+..      +..+++|++|++.+..++..... 
T Consensus       138 ~mi~~SdN~Aa~~L~~~lGg~~-----~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~~~~-  211 (266)
T 1alq_A          138 ASMTYSDNTANNKIIKEIGGIK-----KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGK-  211 (266)
T ss_dssp             HHHHHCCHHHHHHHHHHHTCHH-----HHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTSSS-
T ss_pred             HHHHCCHHHHHHHHHHHHCCCH-----HHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf             8775487999999999977616-----8999999747322762677765556777874444499999999999985787-


Q ss_pred             EEEEEEEEEEEECCEEEEEECHHCCC-CC-C-CEEEEECCCCCCC-CEEEE
Q ss_conf             67761156543478699721010257-68-7-0056522423337-17999
Q gi|254780698|r  208 YYKYFSIRKFRYRNRIITNHNKLLNK-MH-N-IDGIKTGYTRNSG-FNIVT  254 (336)
Q Consensus       208 ~~~~~s~~~~~~~~~~~~n~N~lL~~-~~-g-~~G~KTG~T~~AG-~clv~  254 (336)
                      +....+..-..+-. ...++|.+|.. .| + ..|.|||++...| +|-++
T Consensus       212 ls~~~~~~l~~~m~-~~~~~~~~l~~~lP~~~~Va~KTGt~~~~G~~~D~a  261 (266)
T 1alq_A          212 LSKENKKFLLDLML-NNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVA  261 (266)
T ss_dssp             CCHHHHHHHHHHHH-TCGGGTTTHHHHSCTTCEEEEEEEECSSTTCEEEEE
T ss_pred             CCHHHHHHHHHHHH-CCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             89999999999996-396443005543999988999650577677621599