HHsearch results for GI: 254780698 and protein with PDBid: 1nrf_A
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=99.02 E-value=1.5e-09 Score=74.58 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=117.7
Q ss_pred CCEEEEECCCCEEE-EECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH
Q ss_conf 31999998896283-1136-99888-813879999999999755589885541115367612454432257885688302
Q gi|254780698|r 54 YSSIVIDVNKNQMT-GFKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336)
Q Consensus 54 ~sAiv~D~~tG~IL-y~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336)
-+.|++|.+||+++ |..| ...|+ |+|+=|++|++.+||. |.+..++.+...... ....... .-..
T Consensus 35 G~~vv~d~~tg~~~~~n~n~~~~~~~PGSTfK~~~~~aaLe~---g~~~~~~~~~~~~~~------~~~~~~~---~g~~ 102 (262)
T 1nrf_A 35 GGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALES---GIITKNDSHMTWDGT------QYPYKEW---NQDQ 102 (262)
T ss_dssp EEEEEEETTTTEEEEECHHHHHSCBCCGGGGHHHHHHHHHHH---TSSCSSCCCBCCCCC------CCSSTTT---SSCB
T ss_pred EEEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHC---CCCCCCCEEECCCCC------CCCCCCC---CCCC
T ss_conf 589999899997863198997577899752899999999985---999998745659985------0367888---9997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCCCCHHHHHHHHHHHCCCC----
Q ss_conf 457889987777765455420100578999888768872661222002454-333344530134555554201362----
Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKNF---- 205 (336)
Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-l~~~~~~tta~Dla~l~~~~~~~~---- 205 (336)
-+...+..|.|-..+-|+..++. +.|.+.++++|+.+.....|.. +.......|+..|+.+...+...-
T Consensus 103 ~l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~ 176 (262)
T 1nrf_A 103 DLFSAMSSSTTWYFQKLDRQIGE------DHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDFK 176 (262)
T ss_dssp CHHHHHHHTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997570988523242585------789999998399998889863787479755239999999999954688778
Q ss_pred EEEEEEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCC----EEEEEEEECCEEEEEEEE
Q ss_conf 046776115654347869972101025768700565224233371----799999978979999981
Q gi|254780698|r 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF----NIVTSLRYKDDPIVAVVM 268 (336)
Q Consensus 206 p~~~~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~----clv~~a~~~g~~lI~Vvl 268 (336)
|++.+... +.-.......+..+.|||+....|. -||+.+..++.+++.+|+
T Consensus 177 p~~~~~~~------------~~~~~~~~~~~~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~ 231 (262)
T 1nrf_A 177 QSNIETVK------------DSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVH 231 (262)
T ss_dssp HHHHHHHH------------HHHEEEEETTEEEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHH------------HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf 89999998------------78766544123356640254368998628999999879985999999