HHsearch results for GI: 254780698 and protein with PDBid: 1nrf_A

>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=99.02  E-value=1.5e-09  Score=74.58  Aligned_cols=185  Identities=15%  Similarity=0.103  Sum_probs=117.7

Q ss_pred             CCEEEEECCCCEEE-EECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH
Q ss_conf             31999998896283-1136-99888-813879999999999755589885541115367612454432257885688302
Q gi|254780698|r   54 YSSIVIDVNKNQMT-GFKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ  130 (336)
Q Consensus        54 ~sAiv~D~~tG~IL-y~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d  130 (336)
                      -+.|++|.+||+++ |..| ...|+ |+|+=|++|++.+||.   |.+..++.+......      .......   .-..
T Consensus        35 G~~vv~d~~tg~~~~~n~n~~~~~~~PGSTfK~~~~~aaLe~---g~~~~~~~~~~~~~~------~~~~~~~---~g~~  102 (262)
T 1nrf_A           35 GGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALES---GIITKNDSHMTWDGT------QYPYKEW---NQDQ  102 (262)
T ss_dssp             EEEEEEETTTTEEEEECHHHHHSCBCCGGGGHHHHHHHHHHH---TSSCSSCCCBCCCCC------CCSSTTT---SSCB
T ss_pred             EEEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHC---CCCCCCCEEECCCCC------CCCCCCC---CCCC
T ss_conf             589999899997863198997577899752899999999985---999998745659985------0367888---9997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCCCCHHHHHHHHHHHCCCC----
Q ss_conf             457889987777765455420100578999888768872661222002454-333344530134555554201362----
Q gi|254780698|r  131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKNF----  205 (336)
Q Consensus       131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-l~~~~~~tta~Dla~l~~~~~~~~----  205 (336)
                      -+...+..|.|-..+-|+..++.      +.|.+.++++|+.+.....|.. +.......|+..|+.+...+...-    
T Consensus       103 ~l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~  176 (262)
T 1nrf_A          103 DLFSAMSSSTTWYFQKLDRQIGE------DHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDFK  176 (262)
T ss_dssp             CHHHHHHHTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             99999997570988523242585------789999998399998889863787479755239999999999954688778


Q ss_pred             EEEEEEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCC----EEEEEEEECCEEEEEEEE
Q ss_conf             046776115654347869972101025768700565224233371----799999978979999981
Q gi|254780698|r  206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF----NIVTSLRYKDDPIVAVVM  268 (336)
Q Consensus       206 p~~~~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~----clv~~a~~~g~~lI~Vvl  268 (336)
                      |++.+...            +.-.......+..+.|||+....|.    -||+.+..++.+++.+|+
T Consensus       177 p~~~~~~~------------~~~~~~~~~~~~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~  231 (262)
T 1nrf_A          177 QSNIETVK------------DSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVH  231 (262)
T ss_dssp             HHHHHHHH------------HHHEEEEETTEEEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             HHHHHHHH------------HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf             89999998------------78766544123356640254368998628999999879985999999