HHsearch results for GI: 254780698 and protein with PDBid: 1tvf_A
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=100.00 E-value=0 Score=492.72 Aligned_cols=244 Identities=24% Similarity=0.305 Sum_probs=227.8
Q ss_pred CEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC----CCCCCCCCCCCEEEEE
Q ss_conf 199999889628311369988-88138799999999997555898855411153676124----5443225788568830
Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTE 129 (336)
Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~----~~s~~~l~~g~~~tv~ 129 (336)
+++|+|++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++|++|++++.. ++|.+++++|+.+|++
T Consensus 36 ~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~~tv~ 115 (369)
T 1tvf_A 36 TSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIA 115 (369)
T ss_dssp SEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCEEEHH
T ss_pred CEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCEEEHH
T ss_conf 36999978992942678099828789999999999999886389883447135799997345877761244389797599
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC--------------CCCCCCHHHHH
Q ss_conf 2457889987777765455420100578999888768872661222002454333--------------34453013455
Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARDQA 195 (336)
Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~--------------~~~~tta~Dla 195 (336)
|||+++|+.|+||||++|||+++|++++|+++||++|++|||++|||.||+||++ .+|++||+||+
T Consensus 116 dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA~Dla 195 (369)
T 1tvf_A 116 DLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYA 195 (369)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHH
T ss_conf 99998764477789999998704777999999999999848898756678888775444345433433343040299999
Q ss_pred HHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHC----CCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCC
Q ss_conf 555420136204677611565434786997210102----5768700565224233371799999978979999981799
Q gi|254780698|r 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271 (336)
Q Consensus 196 ~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL----~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~ 271 (336)
+|++++++++|+++++++.+.++++...+.|+|.++ ..|+|++|+|||||++||+|||++++|||+|+|+||||++
T Consensus 196 ~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VVlg~~ 275 (369)
T 1tvf_A 196 ILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAG 275 (369)
T ss_dssp HHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES
T ss_pred HHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCC
T ss_conf 99988763482110002275100275111310201156655667731031245367872799999999989999995899
Q ss_pred CH------HHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 87------8999999999999840154034320
Q gi|254780698|r 272 TS------QERDQKALELITSFLEKKTLKHQQT 298 (336)
Q Consensus 272 s~------~~R~~~~~~Ll~~~f~~~~~~~~~~ 298 (336)
+. ..||.|+++||||+|++|..+....
T Consensus 276 ~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~ 308 (369)
T 1tvf_A 276 DYKNLGGEKQRNMMGNALMERSFDQYKYVKILS 308 (369)
T ss_dssp BTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEC
T ss_conf 865542478899999999999986266999744