HHsearch results for GI: 254780698 and protein with PDBid: 1vqq_A

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=97.56  E-value=0.0011  Score=39.57  Aligned_cols=109  Identities=16%  Similarity=0.108  Sum_probs=72.6

Q ss_pred             CCCEEEEECCCCEEEEE-CCC-------------------------------CCCC-CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             63199999889628311-369-------------------------------9888-81387999999999975558988
Q gi|254780698|r   53 KYSSIVIDVNKNQMTGF-KQD-------------------------------EPRY-PASLTKMMTLYIIFEYLQSKKLH   99 (336)
Q Consensus        53 ~~sAiv~D~~tG~ILy~-Kn~-------------------------------~~~~-PASlTKlMTa~v~le~i~~g~i~   99 (336)
                      ..+++++|..||+||.- ..+                               ...+ |.|+-|++|+..+|+   .|.+.
T Consensus       322 ~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i~  398 (646)
T 1vqq_A          322 YGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTLD  398 (646)
T ss_dssp             SEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSSC
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCCC
T ss_conf             352899824667067775057655442114653122122335621455555451113454201788999997---69979


Q ss_pred             CCCCCCCCHHHHCCCCCCCC-----CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             55411153676124544322-----5788-56883024578899877777654554201005789998887688726612
Q gi|254780698|r  100 LNTQIPVSKTAATQNPSKLY-----LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN  173 (336)
Q Consensus       100 ~~~~v~is~~a~~~~~s~~~-----l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~  173 (336)
                      +++.+.+....+..+.+.-.     ...+ ..+    -+.-.+..|.|-..+-+|..++..      .+.+.++++|+..
T Consensus       399 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v----~l~~al~~S~N~~f~~la~~lg~~------~l~~~a~~fG~g~  468 (646)
T 1vqq_A          399 DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNI----DLKQAIESSDNIFFARVALELGSK------KFEKGMKKLGVGE  468 (646)
T ss_dssp             TTCEEEECSSEECSSGGGTTCCEECSSCCCEEE----EHHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHHTTTTS
T ss_pred             CCCEEEECCCCEECCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHH------HHHHHHHHCCCCC
T ss_conf             998799478414346776764334667888723----212030578789999999876388------9998887636898


Q ss_pred             C
Q ss_conf             2
Q gi|254780698|r  174 T  174 (336)
Q Consensus       174 t  174 (336)
                      .
T Consensus       469 ~  469 (646)
T 1vqq_A          469 D  469 (646)
T ss_dssp             C
T ss_pred             C
T ss_conf             8