HHsearch results for GI: 254780698 and protein with PDBid: 1vqq_A
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=97.56 E-value=0.0011 Score=39.57 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCEEEEE-CCC-------------------------------CCCC-CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 63199999889628311-369-------------------------------9888-81387999999999975558988
Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF-KQD-------------------------------EPRY-PASLTKMMTLYIIFEYLQSKKLH 99 (336)
Q Consensus 53 ~~sAiv~D~~tG~ILy~-Kn~-------------------------------~~~~-PASlTKlMTa~v~le~i~~g~i~ 99 (336)
..+++++|..||+||.- ..+ ...+ |.|+-|++|+..+|+ .|.+.
T Consensus 322 ~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i~ 398 (646)
T 1vqq_A 322 YGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTLD 398 (646)
T ss_dssp SEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSSC
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCCC
T ss_conf 352899824667067775057655442114653122122335621455555451113454201788999997---69979
Q ss_pred CCCCCCCCHHHHCCCCCCCC-----CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55411153676124544322-----5788-56883024578899877777654554201005789998887688726612
Q gi|254780698|r 100 LNTQIPVSKTAATQNPSKLY-----LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 (336)
Q Consensus 100 ~~~~v~is~~a~~~~~s~~~-----l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~ 173 (336)
+++.+.+....+..+.+.-. ...+ ..+ -+.-.+..|.|-..+-+|..++.. .+.+.++++|+..
T Consensus 399 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v----~l~~al~~S~N~~f~~la~~lg~~------~l~~~a~~fG~g~ 468 (646)
T 1vqq_A 399 DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNI----DLKQAIESSDNIFFARVALELGSK------KFEKGMKKLGVGE 468 (646)
T ss_dssp TTCEEEECSSEECSSGGGTTCCEECSSCCCEEE----EHHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHHTTTTS
T ss_pred CCCEEEECCCCEECCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHH------HHHHHHHHCCCCC
T ss_conf 998799478414346776764334667888723----212030578789999999876388------9998887636898
Q ss_pred C
Q ss_conf 2
Q gi|254780698|r 174 T 174 (336)
Q Consensus 174 t 174 (336)
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T Consensus 469 ~ 469 (646)
T 1vqq_A 469 D 469 (646)
T ss_dssp C
T ss_pred C
T ss_conf 8