HHsearch results for GI: 254780698 and protein with PDBid: 2wad_A
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=98.56 E-value=2e-05 Score=49.92 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCEEEEEC---------------C-C-C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
Q ss_conf 631999998896283113---------------6-9-9-88881387999999999975558988554111536761245
Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFK---------------Q-D-E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114 (336)
Q Consensus 53 ~~sAiv~D~~tG~ILy~K---------------n-~-~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~ 114 (336)
..+++|+|.+||+||.-- | + . .+.|.|+-|.+|++.+|| +|.+++++.+........ +
T Consensus 342 ~~~~vv~dp~tG~IlAm~~~~~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~~aALe---~g~~~~~~~~~d~~~~~~-~ 417 (680)
T 2wad_A 342 GVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWE---NGVLSGNQTLTDQPIVFQ-G 417 (680)
T ss_dssp EEEEEEECTTTCBEEEEEEEEECTTTCCEEECTTHHHHCCBCCGGGGHHHHHHHHHH---TTSCCSSCCEEECCBCBT-T
T ss_pred CEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCCCCC-C
T ss_conf 669999966658044136763122100134544201111357875216788999997---089998735713784223-6
Q ss_pred CCC--CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHCCCCCCEECC-
Q ss_conf 443--2257885688302457889987777765455420100------------5789998887688726612220024-
Q gi|254780698|r 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------------EKKFAILMSNKAKKIGMQNTIYKNA- 179 (336)
Q Consensus 115 ~s~--~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs------------~~~Fv~~MN~~A~~lGl~~t~f~np- 179 (336)
+.. .+-..|. ..-.--+...+..|.|-.++-+|+.+.|. .+.-.+.+.+.++.+|+....-...
T Consensus 418 ~~~~~~~~~~~~-~~g~itl~~Al~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~lp 496 (680)
T 2wad_A 418 SAPIYSWYKLAY-GSFPITAVEALEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDLP 496 (680)
T ss_dssp SCCBCCTTTTTT-CSEEECHHHHHHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCSSS
T ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 886421013677-8877205636450755999999987502445403330426787654688999997099865688665
Q ss_pred ---CCCCC--------------CCCCCCHHHHHHHHHHHC
Q ss_conf ---54333--------------344530134555554201
Q gi|254780698|r 180 ---SGLHD--------------KNQITTARDQAILGILLR 202 (336)
Q Consensus 180 ---~Gl~~--------------~~~~tta~Dla~l~~~~~ 202 (336)
.|+-. .+...|+-.||.....+.
T Consensus 497 ~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~ia 536 (680)
T 2wad_A 497 DESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIA 536 (680)
T ss_dssp CCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4456767752333322322357767789999999999997