HHsearch results for GI: 254780698 and protein with PDBid: 3equ_A
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=97.85 E-value=0.00088 Score=40.16 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCEEEEE--C-----------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 63199999889628311--3-----------------6-9-9888-8138799999999997555898855411153676
Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF--K-----------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110 (336)
Q Consensus 53 ~~sAiv~D~~tG~ILy~--K-----------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a 110 (336)
..+++++|.+||+||.- . | + ...+ |+|+-|.+|++.+++. |.+..+..+.....
T Consensus 223 ~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~~---g~~~~~~~~~~~~~- 298 (542)
T 3equ_A 223 AGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDA---GKTDLNERLNTQPY- 298 (542)
T ss_dssp EEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHHH---TSSCTTCEEECCCE-
T ss_pred CCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHC---CCEECCEECCCCCC-
T ss_conf 63489850677836764267766622123566311243444076778426668999999856---96303301145775-
Q ss_pred HCCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 124544322-578856883024578899877777654554201005789998887688726612
Q gi|254780698|r 111 ATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 (336)
Q Consensus 111 ~~~~~s~~~-l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~ 173 (336)
..++.... -.....+++ ...+..|.|-..+-+++.++. +.+-+.++++|+..
T Consensus 299 -~~~~~~~~~~~~~G~~~l----~~al~~S~N~~~~~l~~~~g~------~~~~~~~~~fG~g~ 351 (542)
T 3equ_A 299 -KIGPSPVRDTHVYPSLDV----RGIMQKSSNVGTSKLSARFGA------EEMYDFYHELGIGV 351 (542)
T ss_dssp -EETTEEECCSSCCSEEEH----HHHHHHTCHHHHHHHHTTSCH------HHHHHHHHHTTTTS
T ss_pred -CCCCCCCCCCCCCCCCCH----HHHHHCCCEEHHHHHHHHCCH------HHHHHHHHHCCCCC
T ss_conf -344321123367784248----998541745154578887295------88999999749986