Query gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 336 No_of_seqs 248 out of 3383 Neff 7.2 Searched_HMMs 23785 Date Tue May 31 18:01:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780698.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3hun_A Penicillin-binding prot 100.0 0 0 523.8 19.9 246 53-298 70-344 (453) 2 3ita_A D-alanyl-D-alanine carb 100.0 0 0 506.8 22.6 253 48-300 8-268 (352) 3 1z6f_A Penicillin-binding prot 100.0 0 0 507.0 21.1 254 46-299 10-271 (363) 4 3a3j_A PBP5; penicillin bindin 100.0 0 0 495.8 22.6 253 49-301 5-263 (344) 5 1xp4_A D-alanyl-D-alanine carb 100.0 0 0 494.4 22.3 253 48-300 9-287 (379) 6 1tvf_A PBP4, penicillin bindin 100.0 0 0 492.7 21.0 244 55-298 36-308 (369) 7 3mfd_A D-alanyl-D-alanine carb 100.0 0 0 491.0 20.4 244 47-299 3-251 (334) 8 1es5_A DD-transpeptidase; peni 100.0 0 0 466.9 17.4 237 49-289 4-261 (262) 9 2bcf_A Probable D-alanyl-D-ala 100.0 0 0 459.5 17.8 242 49-297 15-266 (276) 10 1w7f_A Beta-lactamase; hydrola 100.0 7.1E-36 3E-40 231.6 11.0 227 55-290 62-304 (307) 11 2cc1_A Beta-lactamase, penicil 100.0 2.5E-36 1E-40 234.3 7.2 228 53-287 17-253 (262) 12 2qpn_A Beta-lactamase GES-1; A 100.0 4.5E-35 1.9E-39 226.8 9.3 215 54-271 39-259 (287) 13 1m40_A TEM-1, beta-lactamase T 100.0 4.3E-34 1.8E-38 221.0 13.0 210 53-269 18-238 (263) 14 3m6b_A Beta-lactamase, penicil 100.0 5.2E-35 2.2E-39 226.4 8.0 211 55-270 18-238 (265) 15 3dw0_A Class A carbapenemase K 100.0 1.1E-33 4.6E-38 218.6 12.6 229 55-290 45-290 (294) 16 2j9o_A TLL2115 protein; penici 100.0 1.9E-33 7.9E-38 217.2 12.0 231 53-290 35-273 (298) 17 1n9b_A Penicillinase, beta-lac 100.0 1.5E-33 6.5E-38 217.7 11.2 234 54-289 19-261 (265) 18 2p74_A Beta-lactamase CTX-M-9A 100.0 1.9E-32 8E-37 211.2 12.7 210 53-269 19-238 (263) 19 2wk0_A Beta-lactamase; hydrola 100.0 2.1E-32 8.7E-37 210.9 11.3 228 54-290 19-262 (265) 20 1o7e_A L2 beta lactamase; hydr 100.0 1.2E-32 5.1E-37 212.3 9.1 233 54-289 31-276 (276) 21 3c5a_A Class A carbapenemase K 100.0 3E-32 1.3E-36 210.0 10.6 230 52-288 17-263 (264) 22 3p09_A Beta-lactamase; structu 100.0 2.5E-32 1.1E-36 210.5 8.8 233 54-290 39-287 (290) 23 1bue_A Protein (imipenem-hydro 100.0 8.6E-32 3.6E-36 207.3 9.8 215 53-269 18-239 (265) 24 1hzo_A Beta-lactamase; mixed a 100.0 4E-31 1.7E-35 203.3 10.9 236 53-291 20-267 (271) 25 1g6a_A Beta-lactamase PSE-4; c 100.0 1.8E-29 7.7E-34 193.4 13.1 231 54-291 23-266 (271) 26 1bsg_A Beta lactamase, penicil 100.0 2.2E-30 9.2E-35 198.9 6.6 228 54-288 18-265 (266) 27 3lez_A Beta-lactamase; antibio 100.0 3.2E-30 1.4E-34 197.9 7.2 213 53-270 15-234 (260) 28 1e25_A Extended-spectrum beta- 100.0 1.2E-29 4.9E-34 194.5 8.0 231 55-292 21-277 (282) 29 3cjm_A Putative beta-lactamase 100.0 4.6E-28 1.9E-32 185.0 12.3 221 51-292 49-280 (282) 30 1ghp_A Beta-lactamase, penicil 99.9 2.6E-28 1.1E-32 186.5 6.7 232 53-289 14-256 (258) 31 1alq_A CP254 beta-lactamase; h 99.9 1.8E-25 7.4E-30 169.6 6.4 190 55-254 61-261 (266) 32 2wuq_A BLAB, beta-lactamase re 99.9 9.3E-21 3.9E-25 141.4 12.9 208 53-269 21-282 (318) 33 3a3d_A PBP4, penicillin-bindin 99.5 2.1E-12 8.9E-17 91.6 14.2 139 127-268 272-421 (453) 34 1w5d_A Penicillin-binding prot 99.4 5.2E-12 2.2E-16 89.3 11.3 136 127-269 287-439 (462) 35 2ex2_A Penicillin-binding prot 99.2 7.2E-11 3E-15 82.4 11.0 140 126-268 274-425 (458) 36 3hbr_A OXA-48; class D beta-la 99.2 3E-10 1.2E-14 78.8 11.0 205 55-285 43-259 (265) 37 1w79_A D-alanyl-D-alanine carb 99.1 1.1E-09 4.7E-14 75.3 12.2 134 127-268 286-436 (489) 38 1nrf_A Regulatory protein BLAR 99.0 1.5E-09 6.3E-14 74.6 9.3 185 54-268 35-231 (262) 39 2iwb_A Methicillin resistance 98.9 1.4E-08 6.1E-13 68.7 10.3 190 54-268 24-220 (246) 40 1k38_A Penicillinase, beta-lac 98.8 1E-07 4.3E-12 63.6 12.8 187 53-268 20-215 (254) 41 1k55_A Beta lactamase OXA-10; 98.7 1.7E-07 7.3E-12 62.3 11.6 185 54-268 19-218 (246) 42 1xkz_A Regulatory protein BLAR 98.7 2.8E-07 1.2E-11 61.1 12.6 186 54-268 31-227 (255) 43 3i7j_A Beta-lactamase MB2281C; 98.7 2E-07 8.3E-12 62.0 11.3 142 50-203 11-165 (280) 44 3g4p_A Beta-lactamase OXA-24; 98.6 6.2E-07 2.6E-11 59.0 12.3 187 54-268 22-218 (244) 45 2wad_A Penicillin-binding prot 98.6 2E-05 8.6E-10 49.9 18.1 145 53-202 342-536 (680) 46 3isg_A Penicillinase, beta-lac 98.6 8E-07 3.4E-11 58.3 10.8 189 54-268 17-223 (251) 47 2ffy_A Beta-lactamase; AMPC, d 98.5 4.3E-06 1.8E-10 54.0 13.6 141 62-204 31-237 (358) 48 1yqs_A D-alanyl-D-alanine carb 98.5 3.8E-06 1.6E-10 54.3 12.5 197 72-288 54-343 (349) 49 1zkj_A CMY-10, extended-spectr 98.4 4.8E-06 2E-10 53.7 11.7 142 51-203 26-241 (359) 50 1ci9_A ESTB, protein (carboxyl 98.4 5.7E-06 2.4E-10 53.2 11.1 53 51-105 35-101 (392) 51 2qmi_A PBP related beta-lactam 98.3 8.2E-07 3.5E-11 58.2 6.0 143 51-204 19-254 (447) 52 2v2f_F Penicillin binding prot 98.3 8.7E-05 3.7E-09 46.2 16.3 140 54-202 66-228 (390) 53 2wzx_A Beta-lactamase; inhibit 98.3 5.4E-06 2.3E-10 53.4 9.9 134 61-203 33-241 (371) 54 2qz6_A Beta-lactamase; psychro 98.3 9.9E-06 4.2E-10 51.8 11.2 150 51-204 21-237 (358) 55 3ozh_A Beta-lactamase/D-alanin 98.3 5.1E-05 2.1E-09 47.6 14.3 143 56-204 27-246 (351) 56 2drw_A DAA, D-amino acid amida 98.2 2.1E-05 8.7E-10 49.9 10.7 130 73-204 53-262 (363) 57 3lo7_A PBPA, penicillin-bindin 98.1 0.00022 9.1E-09 43.8 14.1 135 53-202 151-349 (483) 58 1ei5_A D-aminopeptidase, DAP; 98.1 2E-05 8.3E-10 50.0 8.7 138 51-203 22-244 (520) 59 1qme_A Penicillin-binding prot 98.1 0.00037 1.6E-08 42.4 15.1 107 53-174 240-376 (702) 60 3fwm_A Penicillin-binding prot 98.0 0.00069 2.9E-08 40.8 15.1 202 54-271 419-673 (751) 61 3oc2_A Penicillin-binding prot 97.9 0.00051 2.1E-08 41.6 13.4 138 53-203 231-412 (564) 62 3equ_A PBP-2, penicillin-bindi 97.9 0.00088 3.7E-08 40.2 13.9 106 53-173 223-351 (542) 63 2dcf_A 6-aminohexanoate-dimer 97.7 0.00012 5E-09 45.3 8.1 140 55-204 83-286 (392) 64 3hlc_A Transesterase, LOVD; al 97.6 5.8E-05 2.5E-09 47.2 5.0 55 51-106 49-122 (432) 65 1vqq_A Saupbp2A, penicillin-bi 97.6 0.0011 4.7E-08 39.6 10.7 109 53-174 322-469 (646) 66 2bg1_A PBP1B, penicillin-bindi 97.1 0.011 4.5E-07 33.7 13.5 135 54-201 125-277 (494) 67 2olv_A Penicillin-binding prot 95.9 0.07 2.9E-06 28.8 11.8 140 53-201 301-457 (669) 68 2jch_A Penicillin-binding prot 95.9 0.07 2.9E-06 28.8 15.5 136 53-201 350-503 (720) 69 1ksh_B Retinal ROD rhodopsin-s 40.5 15 0.00062 15.0 3.1 20 55-74 21-40 (152) 70 3nqz_A MCP-02, secreted metall 38.4 13 0.00055 15.3 2.0 11 323-333 159-169 (180) 71 1xub_A Phenazine biosynthesis 25.3 12 0.00051 15.5 -0.0 45 128-179 26-71 (298) 72 1xmp_A PURE, phosphoribosylami 24.6 27 0.0011 13.4 2.8 24 263-286 13-36 (170) 73 1mki_A Probable glutaminase YB 23.2 29 0.0012 13.2 5.1 42 52-93 49-91 (330) 74 1ym5_A YHI9, hypothetical 32.6 20.8 20 0.00082 14.2 0.3 43 138-182 18-61 (300) No 1 >3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* Probab=100.00 E-value=0 Score=523.84 Aligned_cols=246 Identities=24% Similarity=0.307 Sum_probs=231.0 Q ss_pred CCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC----CCCCCCCCCCCEEE Q ss_conf 63199999889628311369988-88138799999999997555898855411153676124----54432257885688 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFT 127 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~----~~s~~~l~~g~~~t 127 (336) +.+|||||++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++|++|++++.. ++|.+++++|+++| T Consensus 70 a~sail~da~tG~iLy~KN~d~~~~pASlTKlMTa~l~le~i~~g~l~ld~~vtis~~a~~~~~~~~~S~~~l~~G~~~t 149 (453) T 3hun_A 70 EPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWT 149 (453) T ss_dssp CCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTCCCCCCCTTCEEE T ss_pred CCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCCCEEE T ss_conf 76179999899949335784988584499999999999999863798821256689999985258887621452897988 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC--------------CCCCCCHHH Q ss_conf 302457889987777765455420100578999888768872661222002454333--------------344530134 Q gi|254780698|r 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARD 193 (336) Q Consensus 128 v~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~--------------~~~~tta~D 193 (336) ++|||+++|+.|+||||++|||+++|++++|+++||++|++|||++|||.||+||++ ++|+|||+| T Consensus 150 v~dLL~~lli~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~Np~GL~~~~~~~~~~~~~~~~~~~~tTA~D 229 (453) T 3hun_A 150 IADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARD 229 (453) T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCTTCBCSSSSCSCHHHHGGGSCGGGTTCCCCBBCHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999876774427999999998189899999999999998389887666788887644443455444333430510999 Q ss_pred HHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC----CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEEC Q ss_conf 555554201362046776115654347869972101025----7687005652242333717999999789799999817 Q gi|254780698|r 194 QAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269 (336) Q Consensus 194 la~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~----~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg 269 (336) |++|++++++++|++++++++..++++..++.|+|.+|. .|+|+||+|||||++||+|||++++|||+|+|+|||| T Consensus 230 la~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~n~N~~l~~~~~~~~gvdGlKTG~T~~AG~~lv~sa~r~g~~lI~Vvlg 309 (453) T 3hun_A 230 YAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMG 309 (453) T ss_dssp HHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEE T ss_pred HHHHHHHHHHHCCCHHHHCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEEEEEC T ss_conf 99999998763730121014750002765640112355566567777422021120357553999999999899999969 Q ss_pred CCC------HHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 998------78999999999999840154034320 Q gi|254780698|r 270 MPT------SQERDQKALELITSFLEKKTLKHQQT 298 (336) Q Consensus 270 ~~s------~~~R~~~~~~Ll~~~f~~~~~~~~~~ 298 (336) +++ +..||.|+++||||+|++|..+.... T Consensus 310 a~~~~~~~~~~~R~~d~~~Lldy~f~~f~~~~l~~ 344 (453) T 3hun_A 310 AGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILS 344 (453) T ss_dssp ESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEEC T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEC T ss_conf 89866544488899999999999885126999854 No 2 >3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A* Probab=100.00 E-value=0 Score=506.81 Aligned_cols=253 Identities=29% Similarity=0.416 Sum_probs=237.1 Q ss_pred CCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC------CCCCCCCC Q ss_conf 0148763199999889628311369988-8813879999999999755589885541115367612------45443225 Q gi|254780698|r 48 LHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKLYL 120 (336) Q Consensus 48 ~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~------~~~s~~~l 120 (336) ++...+.||||||++||+|||+||++++ +|||+|||||+|+++|++++|+++|++.++++++++. .++|.+++ T Consensus 8 ~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~~e~i~~~~~~l~~~v~vs~~a~~~~~~~~~~~s~~~l 87 (352) T 3ita_A 8 APSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFL 87 (352) T ss_dssp CCCCCSSEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGSTTTCGGGTTSSCCCC T ss_pred CCCCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEEEE T ss_conf 99732159999999999796325909986228999999999999987638999786699469998510445568733541 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 78856883024578899877777654554201005789998887688726612220024543333445301345555542 Q gi|254780698|r 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGIL 200 (336) Q Consensus 121 ~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~ 200 (336) ++|+++|++|||+++|+.||||||++|||+++|++++|+++||++|++|||++|||.||+||++++|+|||+||++++++ T Consensus 88 ~~g~~~tv~dLL~~~li~SaNdAA~aLA~~i~Gs~~~Fv~~MN~kAkelG~~~T~f~np~Gl~~~~~~tta~Dla~l~~~ 167 (352) T 3ita_A 88 KPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKA 167 (352) T ss_dssp CTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCTTCBCCCSSCCCCTTCBBCHHHHHHHHHH T ss_pred CCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 38999999999999887515299999987528999999999999999848998215577777875563469999999999 Q ss_pred HCCCCEEEEEEEEEEEEEECCEEEEEECHHCCCC-CCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHH Q ss_conf 0136204677611565434786997210102576-870056522423337179999997897999998179987899999 Q gi|254780698|r 201 LRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279 (336) Q Consensus 201 ~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~~-~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~ 279 (336) ++.++|.+..+++.+.+.++.+.+.|+|.+|..+ +|++|+|||||++||+|||++++|||+|+|+||||+++.+.||.| T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~N~n~ll~~~~~~i~G~KTG~t~~aG~~lv~~a~~~g~~~i~Vvlg~~~~~~r~~d 247 (352) T 3ita_A 168 LIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNE 247 (352) T ss_dssp HHHHCHHHHGGGGCCEEEETTEEEECCCGGGGCSSCEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEESSHHHHHHH T ss_pred HHHCCCCEEEEEEEEEEECCCEECCCCCCHHCCCCCEEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHH T ss_conf 73368210775006787048611367670011678275569988741478608999985990699999679987788999 Q ss_pred HHHHHHHHHCCCCCEEEEECC Q ss_conf 999999984015403432047 Q gi|254780698|r 280 ALELITSFLEKKTLKHQQTHR 300 (336) Q Consensus 280 ~~~Ll~~~f~~~~~~~~~~~~ 300 (336) +++|+||+|++|..+...... T Consensus 248 ~~~Ll~~~f~~~~~~~~~~~~ 268 (352) T 3ita_A 248 SEKLLTWGFRFFETVTPIKPD 268 (352) T ss_dssp HHHHHHHHHHHEEEECSSCTT T ss_pred HHHHHHHHHHHEEEEEEECCC T ss_conf 999999997534886530144 No 3 >1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A Probab=100.00 E-value=0 Score=507.01 Aligned_cols=254 Identities=28% Similarity=0.400 Sum_probs=237.7 Q ss_pred CCCCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC------CCCCCC Q ss_conf 100148763199999889628311369988-8813879999999999755589885541115367612------454432 Q gi|254780698|r 46 SELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT------QNPSKL 118 (336) Q Consensus 46 ~~~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~------~~~s~~ 118 (336) +.++...+.||||+|++||+|||+||++++ +|||+|||||+|+++|++++|++++++.|+++++++. .++|.+ T Consensus 10 p~~P~i~a~aaiv~d~~tG~iL~~kn~~~~~~~ASlTKlMTa~v~le~i~~g~l~~~~~v~vs~~a~~~~~~~~~~~s~~ 89 (363) T 1z6f_A 10 PGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLM 89 (363) T ss_dssp CCCCCCSEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEECCGGGCGGGCGGGTTSCCC T ss_pred CCCCCCCCEEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCCC T ss_conf 99897652099999999998900069099818689999999999999987399985656983389985236633587511 Q ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 25788568830245788998777776545542010057899988876887266122200245433334453013455555 Q gi|254780698|r 119 YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILG 198 (336) Q Consensus 119 ~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~ 198 (336) ++++|++++++|||+++|+.|+||||++|||+++|++++||++||++|++|||++|||.|||||++++|+|||+|+++++ T Consensus 90 ~l~~ge~~tv~dLl~~lli~SaNdAA~aLAe~~~Gs~~~Fv~~MN~kA~elG~~~T~f~np~Gl~~~~~~tta~Dla~l~ 169 (363) T 1z6f_A 90 FLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIG 169 (363) T ss_dssp CCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCCSSSCCCCTTCBBCHHHHHHHH T ss_pred CCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHH T ss_conf 34589899999999998765643999999986389999999999999999605665044368887246737789999889 Q ss_pred HHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC-CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHH Q ss_conf 4201362046776115654347869972101025-768700565224233371799999978979999981799878999 Q gi|254780698|r 199 ILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERD 277 (336) Q Consensus 199 ~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~-~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~ 277 (336) +++++++|.+..+.+.+.+++....+.|+|.+|. .++|++|+|||||++||+||+++++|+|+|+|+||||+++...|| T Consensus 170 ~~~~~~~p~~~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~G~KTG~t~~AG~~lv~~a~~~g~~~i~Vvlg~~~~~~r~ 249 (363) T 1z6f_A 170 QALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRE 249 (363) T ss_dssp HHHHHHCHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCSTTTT T ss_pred HHHHCCCCCCEEEEEEEEEECCCCEEECCCHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCHHHHH T ss_conf 99845886200245677650378411146334435577760699988713586457789968963899998999856779 Q ss_pred HHHHHHHHHHHCCCCCEEEEEC Q ss_conf 9999999998401540343204 Q gi|254780698|r 278 QKALELITSFLEKKTLKHQQTH 299 (336) Q Consensus 278 ~~~~~Ll~~~f~~~~~~~~~~~ 299 (336) .|+++|++|+|++|..+..... T Consensus 250 ~d~~~L~~~~f~~~~~~~~~~~ 271 (363) T 1z6f_A 250 AESKKLLTWGFRFFETVNPLKV 271 (363) T ss_dssp HHHHHHHHHHHHHEEEEEEECT T ss_pred HHHHHHHHHHHHHEEEEEEECC T ss_conf 9999999999864089963026 No 4 >3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} Probab=100.00 E-value=0 Score=495.84 Aligned_cols=253 Identities=30% Similarity=0.465 Sum_probs=235.2 Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC---CCCCCCCCCCCC Q ss_conf 148763199999889628311369988-8813879999999999755589885541115367612---454432257885 Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT---QNPSKLYLKEKT 124 (336) Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~---~~~s~~~l~~g~ 124 (336) +...+.||||||++||+|||+||++++ +|||+|||||+|+++|++++|++++++++++++.++. .++|.+++++|+ T Consensus 5 P~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~~~~~~~~~~s~~~l~~ge 84 (344) T 3a3j_A 5 PQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNT 84 (344) T ss_dssp CCCCSSEEEEEETTTCCEEEEESTTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTTTCGGGCTTSCCCCCCTTC T ss_pred CCCCCCEEEEEECCCCCEEHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCEEEECCCC T ss_conf 85561399999999996902069098885399999999999999997499986788996499985058987325334897 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 68830245788998777776545542010057899988876887266122200245433334453013455555420136 Q gi|254780698|r 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 125 ~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~ 204 (336) +++++|||+++|++||||||++|||+++|++++|+++||++|++|||++|||.||+||++++|+|||+||++++++++++ T Consensus 85 ~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~np~Gl~~~~~~ttA~Dla~l~~~~~~~ 164 (344) T 3a3j_A 85 QVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 164 (344) T ss_dssp EEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCSSSSCCCCTTCBBCHHHHHHHHHHHHHH T ss_pred EEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHHHCC T ss_conf 68899998777651388099999988089899999999999998388535887453235888766599999999998548 Q ss_pred CEEEEEEEEEEEEEECCEEEEEECHHC-CCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHH Q ss_conf 204677611565434786997210102-576870056522423337179999997-897999998179987899999999 Q gi|254780698|r 205 FPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTSQERDQKALE 282 (336) Q Consensus 205 ~p~~~~~~s~~~~~~~~~~~~n~N~lL-~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~~s~~~R~~~~~~ 282 (336) +|.+..+.+++.+++.+..+.++|.++ ..++|++|+|||||++||+|+++++.+ +|+++|+||||+++...||.|+++ T Consensus 165 ~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~KTG~t~~ag~~~~~~a~~~~~~~ii~Vvlg~~~~~~r~~d~~~ 244 (344) T 3a3j_A 165 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVESKK 244 (344) T ss_dssp CHHHHGGGGCCEEEETTEEEECSCGGGGCTTSEEEEEEEEEETTTEEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHH T ss_pred CCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHH T ss_conf 74114565588776511321355531346776744236554003677259998505860899999779982058999999 Q ss_pred HHHHHHCCCCCEEEEECCC Q ss_conf 9999840154034320477 Q gi|254780698|r 283 LITSFLEKKTLKHQQTHRK 301 (336) Q Consensus 283 Ll~~~f~~~~~~~~~~~~~ 301 (336) |++|+|++|..+....... T Consensus 245 L~~~~f~~y~~~~l~~~g~ 263 (344) T 3a3j_A 245 LLQWGFANFETFKTLEAGK 263 (344) T ss_dssp HHHHHHHHEEEEEEECTTC T ss_pred HHHHHHHHCEEEEEECCCC T ss_conf 9999885347999604897 No 5 >1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1 Probab=100.00 E-value=0 Score=494.39 Aligned_cols=253 Identities=25% Similarity=0.308 Sum_probs=230.5 Q ss_pred CCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC---CCCCCCCC Q ss_conf 0148763199999889628311369988-8813879999999999755589885541115367612454---43225788 Q gi|254780698|r 48 LHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP---SKLYLKEK 123 (336) Q Consensus 48 ~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~---s~~~l~~g 123 (336) .+...+.||||+|++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++++++++++...+ +...+.+| T Consensus 9 ~~~i~A~saiv~d~~tG~iL~~kn~~~~~~pASlTKlMTa~v~le~i~~g~i~l~~~v~vs~~~~~~~~~~~~s~~~~~G 88 (379) T 1xp4_A 9 DFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEA 88 (379) T ss_dssp -CCCSBSSEEEEETTTTEEEEEESCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCHHHHHTTTSCCSSCCCCTT T ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCCCCC T ss_conf 99744458999999999791455909988788999999999999998769999884799458998632786531010278 Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC--------------CCCCC Q ss_conf 5688302457889987777765455420100578999888768872661222002454333--------------34453 Q gi|254780698|r 124 TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQIT 189 (336) Q Consensus 124 ~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~--------------~~~~t 189 (336) +.++++|||+++|++|+||||++|||+++|+++.|+++||++|++|||++|||.||+||++ ++|++ T Consensus 89 ~~~tv~dLl~~lli~S~NdAA~aLA~~i~Gs~~~Fv~~MN~kA~elGm~~T~f~np~GL~~~~~~~~~~~~~~~d~~~~s 168 (379) T 1xp4_A 89 RNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKL 168 (379) T ss_dssp CEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCCSCBCCCSSCCCGGGTTTCSCTTCCTTCCCEE T ss_pred CEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 61679999999988637889999999826839999999999999809964466268998765555556777775502266 Q ss_pred CHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCC----CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEE Q ss_conf 0134555554201362046776115654347869972101025----768700565224233371799999978979999 Q gi|254780698|r 190 TARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLN----KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265 (336) Q Consensus 190 ta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~----~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~ 265 (336) ||+||++++++++.+||+++++++++++++++.++.|+|.++. .++|++|+|||||++||+||+++++|||+|+|+ T Consensus 169 TA~Dla~l~~~~~~~~p~~~~~~~~~~~t~~~~~~~n~N~~l~~~~~~~~gv~G~KTG~T~~AG~~lv~~a~~~g~~~i~ 248 (379) T 1xp4_A 169 SAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVIT 248 (379) T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHTCSEEEETTEEEECSCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEE T ss_pred HHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEE T ss_conf 69999999999987483542024301488814445530334568731146742179721001445367889868908999 Q ss_pred EEECCCCHH----HHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 981799878----99999999999984015403432047 Q gi|254780698|r 266 VVMGMPTSQ----ERDQKALELITSFLEKKTLKHQQTHR 300 (336) Q Consensus 266 Vvlg~~s~~----~R~~~~~~Ll~~~f~~~~~~~~~~~~ 300 (336) ||||+++.+ .||.|+++|+||+|++|..+...... T Consensus 249 Vvlg~~~~~~~~~~R~~d~~~Ll~~~f~~~~~~~i~~~~ 287 (379) T 1xp4_A 249 VVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQG 287 (379) T ss_dssp EEEEECCBTTBTTHHHHHHHHHHHHHHHHEEEEEEECTT T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCC T ss_conf 997898777634455689999999998635375402489 No 6 >1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Probab=100.00 E-value=0 Score=492.72 Aligned_cols=244 Identities=24% Similarity=0.305 Sum_probs=227.8 Q ss_pred CEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC----CCCCCCCCCCCEEEEE Q ss_conf 199999889628311369988-88138799999999997555898855411153676124----5443225788568830 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ----NPSKLYLKEKTYFTTE 129 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~----~~s~~~l~~g~~~tv~ 129 (336) +++|+|++||+|||+||++++ +|||+|||||+|+++|++++|+++|+++|++|++++.. ++|.+++++|+.+|++ T Consensus 36 ~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~~tv~ 115 (369) T 1tvf_A 36 TSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIA 115 (369) T ss_dssp SEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCEEEHH T ss_pred CEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCEEEHH T ss_conf 36999978992942678099828789999999999999886389883447135799997345877761244389797599 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC--------------CCCCCCHHHHH Q ss_conf 2457889987777765455420100578999888768872661222002454333--------------34453013455 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--------------KNQITTARDQA 195 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~--------------~~~~tta~Dla 195 (336) |||+++|+.|+||||++|||+++|++++|+++||++|++|||++|||.||+||++ .+|++||+||+ T Consensus 116 dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA~Dla 195 (369) T 1tvf_A 116 DLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYA 195 (369) T ss_dssp HHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHH T ss_conf 99998764477789999998704777999999999999848898756678888775444345433433343040299999 Q ss_pred HHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHC----CCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCC Q ss_conf 555420136204677611565434786997210102----5768700565224233371799999978979999981799 Q gi|254780698|r 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL----NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271 (336) Q Consensus 196 ~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL----~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~ 271 (336) +|++++++++|+++++++.+.++++...+.|+|.++ ..|+|++|+|||||++||+|||++++|||+|+|+||||++ T Consensus 196 ~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VVlg~~ 275 (369) T 1tvf_A 196 ILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAG 275 (369) T ss_dssp HHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES T ss_pred HHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEEECCC T ss_conf 99988763482110002275100275111310201156655667731031245367872799999999989999995899 Q ss_pred CH------HHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87------8999999999999840154034320 Q gi|254780698|r 272 TS------QERDQKALELITSFLEKKTLKHQQT 298 (336) Q Consensus 272 s~------~~R~~~~~~Ll~~~f~~~~~~~~~~ 298 (336) +. ..||.|+++||||+|++|..+.... T Consensus 276 ~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~ 308 (369) T 1tvf_A 276 DYKNLGGEKQRNMMGNALMERSFDQYKYVKILS 308 (369) T ss_dssp BTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEC T ss_conf 865542478899999999999986266999744 No 7 >3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis} Probab=100.00 E-value=0 Score=490.97 Aligned_cols=244 Identities=27% Similarity=0.362 Sum_probs=224.6 Q ss_pred CCCCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCE Q ss_conf 00148763199999889628311369988-88138799999999997555898855411153676124544322578856 Q gi|254780698|r 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTY 125 (336) Q Consensus 47 ~~~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~ 125 (336) +.....+.||||||++||+|||+||++++ +|||+|||||+|+++|++ .++++++++++++..++|.+++++|++ T Consensus 3 ~~~~i~A~saiv~D~~tG~iL~~kn~~~~~~pASlTKlmT~~v~le~~-----~l~~~v~vs~~a~~~~~s~~~l~~g~~ 77 (334) T 3mfd_A 3 AAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESG-----KMDQTVTVSANAVRTEGSAIYLTEGQK 77 (334) T ss_dssp -CCCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHHTT-----CTTSEEECCHHHHHCCSSCCCCCTTCE T ss_pred CCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCEEEECHHHHCCCCCEEEECCCCE T ss_conf 886763549999999999890206909989568899999999999588-----999869988999437995353548987 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC-CCCCCCHHHHHHHHHHHCCC Q ss_conf 88302457889987777765455420100578999888768872661222002454333-34453013455555420136 Q gi|254780698|r 126 FTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQAILGILLRKN 204 (336) Q Consensus 126 ~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~-~~~~tta~Dla~l~~~~~~~ 204 (336) ++++|||+++|+.|+||||++|||+++|+++.|+++||++|++|||++|||.||+||++ ++|+|||+||++|++++++ T Consensus 78 ~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~n~~GL~~~~~~~sTa~Dla~l~~~~~~- 156 (334) T 3mfd_A 78 VKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYAMK- 156 (334) T ss_dssp EEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTTCBCSSSSCCSCSSSCBBCHHHHHHHHHHHTT- T ss_pred EEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCC- T ss_conf 6099999999876357799999987269789999999999999588576014675675866777569999999986405- Q ss_pred CEEEEEEEEEEEEEECC--EEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHH Q ss_conf 20467761156543478--699721010257-687005652242333717999999789799999817998789999999 Q gi|254780698|r 205 FPQYYKYFSIRKFRYRN--RIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281 (336) Q Consensus 205 ~p~~~~~~s~~~~~~~~--~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~ 281 (336) +|.|+++++++.+++++ ..+.|+|+||.. |+|++|+|||||++||+|||++++|||+|+|+||||+++ ||.|++ T Consensus 157 ~p~~~~i~~~~~~~~~~~~~~~~N~N~lL~~~~~~~~G~KTG~T~~AG~~lv~~a~~~g~~li~Vvlg~~~---~~~d~~ 233 (334) T 3mfd_A 157 LKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPN---DWDDHM 233 (334) T ss_dssp SHHHHHHHTCSEEECSSSSCEEECCCHHHHTTCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEESCTT---HHHHHH T ss_pred CHHHHHHCCEEEEECCCCCCEEECCCCHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC---CHHHHH T ss_conf 72244214168997267552213347400204776252485257888841789999999899999927886---277999 Q ss_pred HHHHHHHCCCCCEEEEEC Q ss_conf 999998401540343204 Q gi|254780698|r 282 ELITSFLEKKTLKHQQTH 299 (336) Q Consensus 282 ~Ll~~~f~~~~~~~~~~~ 299 (336) +|++|+|++|........ T Consensus 234 ~Ll~~~f~~~~~~~l~~~ 251 (334) T 3mfd_A 234 KMFNYVFEHYQTYLIAKK 251 (334) T ss_dssp HHHHHHHHHEEEEEEECS T ss_pred HHHHHHHHHCEEEEECCC T ss_conf 999999862679982038 No 8 >1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A Probab=100.00 E-value=0 Score=466.88 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=217.5 Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH----HHCCCCCCCCCCCC Q ss_conf 148763199999889628311369988-8813879999999999755589885541115367----61245443225788 Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT----AATQNPSKLYLKEK 123 (336) Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~----a~~~~~s~~~l~~g 123 (336) +...+.+|||+|++||+|||+||++++ +|||+|||||+|+++ ++++++|+++|++++. ....+++.+++++| T Consensus 4 P~i~a~~aiv~d~~tG~vL~~kn~~~~~~pASlTKlmTa~~~l---~~~~l~ld~~vti~~~~~~~~~~~~~s~~~l~~G 80 (262) T 1es5_A 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG 80 (262) T ss_dssp CCCSCSEEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHH---TCTTCCTTCEEECCHHHHHHHHHTTCCCCCCCTT T ss_pred CCCCCCEEEEEECCCCCCHHEECCCCCCCCHHHHHHHHHHHHH---HHCCCCCCCEEEEEHHHHHHHHCCCCCEEEECCC T ss_conf 9746518999999999591126909988778899999999999---8089998878998476766764078725622599 Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHH Q ss_conf 568830245788998777776545542010------05789998887688726612220024543333445301345555 Q gi|254780698|r 124 TYFTTEQGILALITRSANDVSTAFGEFISG------SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAIL 197 (336) Q Consensus 124 ~~~tv~dLl~~lli~S~NdAa~alAe~i~G------s~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l 197 (336) +.+|++|||+++|+.|+||||++|||+++| +++.|+++||++|++|||++|||.||+|+++++|++||+||++| T Consensus 81 ~~~tv~dLl~~~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~~lGm~~T~f~n~~Gl~~~~n~sTa~Dla~l 160 (262) T 1es5_A 81 DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI 160 (262) T ss_dssp CEEEHHHHHHHHHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHTTCSSCBCSSSSCCSCTTCBBCHHHHHHH T ss_pred CEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 89779999999998615699999998538986321209999999999999837865543046765445775899999999 Q ss_pred HHHHCCCCEEEEEEEEEEEEEECC----------EEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEE Q ss_conf 542013620467761156543478----------6997210102576870056522423337179999997897999998 Q gi|254780698|r 198 GILLRKNFPQYYKYFSIRKFRYRN----------RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVV 267 (336) Q Consensus 198 ~~~~~~~~p~~~~~~s~~~~~~~~----------~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vv 267 (336) +++++++ |.+.++.++++++++. ..+.|+|+||+.|+|++|+|||||++||+|||++++|||+|+|+|| T Consensus 161 ~~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~n~N~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~li~Vv 239 (262) T 1es5_A 161 ASSAMKN-STFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTV 239 (262) T ss_dssp HHHHTTS-HHHHHHHTCSEECCEEECTTSCEEECCCEECSCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEE T ss_pred HHHHCCC-CHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEE T ss_conf 9985126-215555231027761011368754310000435221568993599954663667579999998997999999 Q ss_pred ECCCCHHHHHHHHHHHHHHHHC Q ss_conf 1799878999999999999840 Q gi|254780698|r 268 MGMPTSQERDQKALELITSFLE 289 (336) Q Consensus 268 lg~~s~~~R~~~~~~Ll~~~f~ 289 (336) ||+++.+.||.|+++|+||||. T Consensus 240 lg~~~~~~r~~d~~~Lld~gFa 261 (262) T 1es5_A 240 LASTSIPARESDATKIMNYGFA 261 (262) T ss_dssp EEESSHHHHHHHHHHHHHHHHH T ss_pred ECCCCCHHHHHHHHHHHHHHCC T ss_conf 6989912899999999986614 No 9 >2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis} Probab=100.00 E-value=0 Score=459.50 Aligned_cols=242 Identities=19% Similarity=0.208 Sum_probs=218.1 Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEE Q ss_conf 148763199999889628311369988-8813879999999999755589885541115367612454432257885688 Q gi|254780698|r 49 HAKPKYSSIVIDVNKNQMTGFKQDEPR-YPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127 (336) Q Consensus 49 ~~~~~~sAiv~D~~tG~ILy~Kn~~~~-~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~t 127 (336) +..++.||||+|++||+|||+||++++ +|||+|||||+|+++|+++ +++.+.++..+...+++.+++++|+.++ T Consensus 15 P~i~A~saiv~D~~tG~iL~~kn~d~~~~pASlTKlMTa~v~le~~~-----~~~~v~~~~~~~~~~~s~~~l~~G~~~t 89 (276) T 2bcf_A 15 PDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELD-----LNSTVVADVADTQAECNCVGVKPGRSYT 89 (276) T ss_dssp CCCSCSEEEEEETTTCEEEEEESTTCCBCCGGGHHHHHHHHHHHHCC-----TTCEEECCTGGGCCSSCCCCCCTTCEEE T ss_pred CCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-----CCCEEEEEHHHHHHHCEEEEECCCCEEE T ss_conf 99764089999999998900049299827389999999999998347-----8986997445544221034326998999 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCC--CCCCCHHHHHHHHHHHCCCC Q ss_conf 3024578899877777654554201005789998887688726612220024543333--44530134555554201362 Q gi|254780698|r 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK--NQITTARDQAILGILLRKNF 205 (336) Q Consensus 128 v~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~--~~~tta~Dla~l~~~~~~~~ 205 (336) ++|||+++|+.|+||||++|||+++|+ ++|+++||++|++|||++|+|.||+||+++ +|++||+||+++++++++ + T Consensus 90 v~dLl~~~lv~S~NdAA~aLA~~~gg~-~~Fv~~MN~~A~~lGm~~T~F~np~Gl~~~~~~~~sTA~Dla~l~~~~~~-~ 167 (276) T 2bcf_A 90 VRQLLDGLLLVSGNDAANTLAHMLGGQ-DVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMA-N 167 (276) T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTCTTCBCSSSSSSCBTTBSCBBCHHHHHHHHHHHHH-S T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH-C T ss_conf 999998898862377999988875697-57999999999984977566067877999875554689999999999986-8 Q ss_pred EEEEEEEEEEEEEEC----CEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCC---CHHHHHH Q ss_conf 046776115654347----869972101025768700565224233371799999978979999981799---8789999 Q gi|254780698|r 206 PQYYKYFSIRKFRYR----NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP---TSQERDQ 278 (336) Q Consensus 206 p~~~~~~s~~~~~~~----~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~---s~~~R~~ 278 (336) |.|.++++++++.++ ...+.|+|.||++++|++|+|||||++||+|||++++|||+|+|+||||+. +...||. T Consensus 168 p~~~~i~~~~~~~~~~~~~~~~~~n~n~ll~~~~g~~G~KTG~t~~AG~~lv~~a~~~g~~lI~vVlg~~~~~~~~~r~~ 247 (276) T 2bcf_A 168 PVFAQIIAEPSAMFPSDDGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWD 247 (276) T ss_dssp HHHHHHHHCSEEEECCC--CEEEECCCTHHHHSTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEECCCTTCCCHHH T ss_pred CHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCCHHHHHH T ss_conf 06664343578999356673125553402440788244036302478857999999999799999978877787147999 Q ss_pred HHHHHHHHHHCCCCCEEEE Q ss_conf 9999999984015403432 Q gi|254780698|r 279 KALELITSFLEKKTLKHQQ 297 (336) Q Consensus 279 ~~~~Ll~~~f~~~~~~~~~ 297 (336) |+++|+||+|..++.+... T Consensus 248 d~~~Lld~gF~~~~~~~v~ 266 (276) T 2bcf_A 248 QAATLFDWGFALNPQASVG 266 (276) T ss_dssp HHHHHHHHHHHSCTTCCSE T ss_pred HHHHHHHHHHCCCCCCEEE T ss_conf 9999999873458777146 No 10 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Probab=100.00 E-value=7.1e-36 Score=231.61 Aligned_cols=227 Identities=17% Similarity=0.088 Sum_probs=171.7 Q ss_pred CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH Q ss_conf 1999998896283113699888-813879999999999755589885541115367612454432257885688302457 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~ 133 (336) +..++|.+||+++ ++|+++++ |||++|+||++++|+++++++ ||+++++++..+..+++.+++.+|+.++++||++ T Consensus 62 gv~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~~~--Ld~~v~i~~~~~~~~~~~~~~~~g~~~tv~~Ll~ 138 (307) T 1w7f_A 62 GIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKSIED--LNQRITYTRDDLVNYNPITEKHVDTGMTLKELAD 138 (307) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHCCTGG--GGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999989999888-888998403278999999999998657677--6751466388750589740026898344999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC------CCCCCCCCHHHHHHHHHHHCCCCEE Q ss_conf 8899877777654554201005789998887688726612220024543------3334453013455555420136204 Q gi|254780698|r 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------HDKNQITTARDQAILGILLRKNFPQ 207 (336) Q Consensus 134 ~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl------~~~~~~tta~Dla~l~~~~~~~~p~ 207 (336) ++++.|+|+|+.+|++.++|.+ .||+.++++|+.++++.+..+. ....+.+|++|++.+...+... +. T Consensus 139 ~mi~~SdN~Aa~~L~~~lgg~~-----~~~~~~~~lg~~~t~l~~~~~~~~~~~~~~~~~~tt~~~~a~ll~~~~~~-~~ 212 (307) T 1w7f_A 139 ASLRYSDNTAQNLILKQIGGPE-----SLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALE-DK 212 (307) T ss_dssp HHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS-SS T ss_pred HHHHCCCHHHHHHHHHHHCCHH-----HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CC T ss_conf 9984684599999999808837-----89999997595116357667665678888653434599999999987417-53 Q ss_pred EEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECCCCH------HHHHH Q ss_conf 677611565434--786997210102576870056522423337179999997-897999998179987------89999 Q gi|254780698|r 208 YYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPTS------QERDQ 278 (336) Q Consensus 208 ~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~~s~------~~R~~ 278 (336) .....+.....+ ......+..+......+.+|.|||+++.+|+|+++.+.. +|+++|.|||...+. +.-.. T Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~g~~~iivVl~~~~~~~~~~~~~lia 292 (307) T 1w7f_A 213 LPSEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYDDKLIA 292 (307) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEECSTTCEEEEEEEECSSSCCEEEEEEEECSSTTCCCCTHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHH T ss_conf 58899999999875245266544456899856898752658870678999986999889999992799988788999999 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999998401 Q gi|254780698|r 279 KALELITSFLEK 290 (336) Q Consensus 279 ~~~~Ll~~~f~~ 290 (336) +..+++-..|++ T Consensus 293 ~iar~~~~~l~~ 304 (307) T 1w7f_A 293 EATKVVVKALNM 304 (307) T ss_dssp HHHHHHHHHC-- T ss_pred HHHHHHHHHHHH T ss_conf 999999999865 No 11 >2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1 Probab=100.00 E-value=2.5e-36 Score=234.35 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=176.6 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) ..+..|+|.+||+++ +.|+++++ |||++|+||++++++.++.|++++++++.++......+++.+.+.+|+.++++|| T Consensus 17 ~~gv~v~dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~l 95 (262) T 2cc1_A 17 LIGLYAANLQSGRRI-THRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVTEARAGAEMTLAEL 95 (262) T ss_dssp EEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGCCSSCHHHHTTTTSEEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCEECCCCCEEEHHHH T ss_conf 699999999999888-8899984983899999999999997552899865389976423037997401268980639999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC------CCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 57889987777765455420100578999888768872661222002454------333344530134555554201362 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG------LHDKNQITTARDQAILGILLRKNF 205 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G------l~~~~~~tta~Dla~l~~~~~~~~ 205 (336) +++|++.|+|+|+.+|+++++|.+ .+|+.++++|+.++.+.+..+ ...+.+++|++|++.+...+.... T Consensus 96 l~~mi~~SdN~Aa~~L~~~~~g~~-----~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~sTa~d~~~l~~~l~~~~ 170 (262) T 2cc1_A 96 CQAALQRSDNTAANLLLKTIGGPA-----AVTAFARSVGDERTRLDRWEVELNSAIPGDPRDTSTPAALAVGYRAILAGD 170 (262) T ss_dssp HHHHHHSCCHHHHHHHHHHHTHHH-----HHHHHHHHTTCCSCCCCSCTTGGGGCCTTCCTTEECHHHHHHHHHHHHHSS T ss_pred HHHHHHHCCHHHHHHHHHHCCCCH-----HHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 999987344799999999849954-----889999964466612576655556788998877644999999999997588 Q ss_pred EEEEEEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEEC-CCCHHHHHHHHHHH Q ss_conf 0467761156543478699721010257687005652242333717999999-789799999817-99878999999999 Q gi|254780698|r 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMG-MPTSQERDQKALEL 283 (336) Q Consensus 206 p~~~~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvlg-~~s~~~R~~~~~~L 283 (336) + +....+..-..+-.....+...-.....+..|.|||+++.+++|.++.+. ++|+++|+|||. ++....|+.++.++ T Consensus 171 ~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~g~v~~~~g~~~i~vv~~~~~~~~~~~~~~~~l 249 (262) T 2cc1_A 171 A-LSPPQRGLLEDWMRANQTSSMRAGLPEGWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPL 249 (262) T ss_dssp S-SCHHHHHHHHHHHHTCSCCSGGGGSCTTCEEEEEEEECSTTCEEEEEEEECTTSCEEEEEEEEEESSSCTTCCCCHHH T ss_pred C-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHH T ss_conf 5-798999999999852737885444788861788861548885789999992899899999996899866058999999 Q ss_pred HHHH Q ss_conf 9998 Q gi|254780698|r 284 ITSF 287 (336) Q Consensus 284 l~~~ 287 (336) +.+. T Consensus 250 i~~i 253 (262) T 2cc1_A 250 IGEL 253 (262) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 12 >2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} Probab=100.00 E-value=4.5e-35 Score=226.84 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=161.5 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCEEEEEHH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245-44322578856883024 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PSKLYLKEKTYFTTEQG 131 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~-~s~~~l~~g~~~tv~dL 131 (336) .+..|+|.+||+++ ++|+++++ |||++|+|+++++++.+++|+++|++++++++.....+ +....+..|..++++|| T Consensus 39 ~gv~v~d~~tg~~~-~~n~d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~tl~~L 117 (287) T 2qpn_A 39 IGVAIVDPQGEIVA-GHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPATERFLASGHMTVLEA 117 (287) T ss_dssp EEEEEECTTCCEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGCCSSCHHHHHHTTTTEEEHHHH T ss_pred EEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCEEEECCCCEEEHHHH T ss_conf 99999989999489-87699742545899999999999987638877661575058885257975034258978789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 578899877777654554201005--789998887688726612220024543333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~--~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +.+|++.|+|+|+.+|+++++|.+ ..|++.|+..+..++.....+ ++.+..+..+.+|++|++.+.+.+... +.+. T Consensus 118 l~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~tta~d~~~ll~~l~~~-~~~~ 195 (287) T 2qpn_A 118 AQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEM-GDNTPGDLRDTTTPIAMARTVAKVLYG-GALT 195 (287) T ss_dssp HHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHTTCSSCCCCCCTTGG-GCCCTTCCTTEECHHHHHHHHHHHHTS-SSSC T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCC T ss_conf 99999955269999999994895578999998263433136777655-667889865640799999999998744-3347 Q ss_pred EEEEEEEEEECCEEEEEECHHCCC--CCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCC Q ss_conf 761156543478699721010257--68700565224233371799999978979999981799 Q gi|254780698|r 210 KYFSIRKFRYRNRIITNHNKLLNK--MHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~n~N~lL~~--~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~ 271 (336) +..+.....+......+++.+... ..+.+|.|||+++.+|+|+++.++.+|+++|+|||... T Consensus 196 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~v~~KTG~~~~~~~~dvgiv~~~~~~~ii~Vl~~~ 259 (287) T 2qpn_A 196 STSTHTIERWLIGNQTGDATLRAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAVYTTA 259 (287) T ss_dssp HHHHHHHHHHHHTCSSCTTSGGGGSCTTSEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEEC T ss_pred HHHHHHHHHHHHCCEECHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCEEEEEEEEECC T ss_conf 8999999999736835222343048989768996053678655999999989956999999259 No 13 >1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ... Probab=100.00 E-value=4.3e-34 Score=220.99 Aligned_cols=210 Identities=15% Similarity=0.064 Sum_probs=164.3 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) ..+++|+|.+||++||++|+++++ |||++|+|+++.++++++.|++++++++++++.....+++.....+|+.++++|| T Consensus 18 ~~~~~v~D~~tg~~l~~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~~~l 97 (263) T 1m40_A 18 RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVREL 97 (263) T ss_dssp EEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGCTTTCEEHHHH T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCEEHHHH T ss_conf 59999999999978777889985445789999999999998652777877479984200237997301268981649999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC------CCCCCCCHHHHHHHHHHHCCCC Q ss_conf 5788998777776545542010057899988876887266122200245433------3344530134555554201362 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------DKNQITTARDQAILGILLRKNF 205 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~------~~~~~tta~Dla~l~~~~~~~~ 205 (336) +.+|++.|+|+|+.+|+++++|.+ .+|..++++|+.++.+.++.+.. ...+.+|++|++.+.+++.... T Consensus 98 l~~mi~~SdN~Aa~~L~~~~gg~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ta~d~a~ll~~l~~~~ 172 (263) T 1m40_A 98 CSAAITMSDNTAANLLLTTIGGPK-----ELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMATTLRKLLTGE 172 (263) T ss_dssp HHHHHHSCCHHHHHHHHHHHTSHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHST T ss_pred HHHHHHCCCHHHHHHHHHHHCCCH-----HHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 999886286799999999846934-----899999983546665168877666899998767408999999999998388 Q ss_pred EEEEEEEEEEEEEECCEEEEEECHHCC---CCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEEC Q ss_conf 046776115654347869972101025---76870056522423337179999997897-99999817 Q gi|254780698|r 206 PQYYKYFSIRKFRYRNRIITNHNKLLN---KMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMG 269 (336) Q Consensus 206 p~~~~~~s~~~~~~~~~~~~n~N~lL~---~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg 269 (336) . +.+..+.....+-... .+.+.++. ......|.|||++..+|+|+++.+..+|+ ++|+||+. T Consensus 173 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~v~~KTG~~~~~~~~~~~iv~~~g~~~~ivvv~~ 238 (263) T 1m40_A 173 L-LTLASRQQLIDWMEAD-KVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYT 238 (263) T ss_dssp T-SCHHHHHHHHHHHHCC-SSCTTTGGGGCCTTCEEEEEEEECSTTCEEEEEEEESTTCCCEEEEEEE T ss_pred C-CCHHHHHHHHHHHHCC-EECCHHCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEEC T ss_conf 4-6888899999887448-1360000123899964888316577887149999991997599999981 No 14 >3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A Probab=100.00 E-value=5.2e-35 Score=226.45 Aligned_cols=211 Identities=13% Similarity=-0.034 Sum_probs=170.6 Q ss_pred CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH Q ss_conf 1999998896283113699888-813879999999999755589885541115367612454432257885688302457 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~ 133 (336) +..|+|.+||+++ ++|+++++ |||++|+|+++++++.++.|+ +++++++++.+...+++.....+|+.++++||++ T Consensus 18 ~v~~~D~~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~--ld~~v~~~~~~~~~~~~~~~~~~g~~~tv~~ll~ 94 (265) T 3m6b_A 18 GVYVPATGTTAAI-EYRADERFAFCSTFKAPLVAAVLHQNPLTH--LDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCD 94 (265) T ss_dssp EEEECCCSSCCCE-EESTTSCEECGGGGHHHHHHHHHHHSCGGG--GGCEECCCGGGCCSCCTTGGGCTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCCCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999999999889-989997388389999999999998577678--8842785499950689852025888514999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCC------CCCCCHHHHHHHHHHHCCCCEE Q ss_conf 8899877777654554201005789998887688726612220024543333------4453013455555420136204 Q gi|254780698|r 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDK------NQITTARDQAILGILLRKNFPQ 207 (336) Q Consensus 134 ~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~------~~~tta~Dla~l~~~~~~~~p~ 207 (336) .|++.|+|+|+.+|++.++ +.+.|.+.||++++++|+++|+|.++.|...+ .+.+|++|++.+...+..... T Consensus 95 ~mi~~SdN~Aa~~L~~~~G-g~~~~~~~~n~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~t~~~~a~~l~~l~~~~~- 172 (265) T 3m6b_A 95 AAIRYSDGTAANLLLADLG-GPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNA- 172 (265) T ss_dssp HHHHSCCHHHHHHHHHHHC-STGGGHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS- T ss_pred HHHHHCCHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC- T ss_conf 9998433899999999968-96889999999999759864361367766554456764102259999999999973765- Q ss_pred EEEEEEEE--EEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECC Q ss_conf 67761156--5434786997210102576870056522423337179999997-897999998179 Q gi|254780698|r 208 YYKYFSIR--KFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGM 270 (336) Q Consensus 208 ~~~~~s~~--~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~ 270 (336) ........ ..-.......+.+.......+..|.|||+++.+++|.++.+.. +|+++|.+||.. T Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~KtG~~~~~~~~dvgiv~~~~g~~~iiaV~~~ 238 (265) T 3m6b_A 173 LPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSD 238 (265) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTHHHHSCTTSEEEEEEEEETTTEEEEEEEEECTTSCEEEEEEEEE T ss_pred CCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEEEC T ss_conf 688899999999745887777644567888568887636787747999999959999899999957 No 15 >3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} Probab=100.00 E-value=1.1e-33 Score=218.56 Aligned_cols=229 Identities=16% Similarity=0.014 Sum_probs=173.7 Q ss_pred CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH Q ss_conf 1999998896283113699888-813879999999999755589885541115367612454432257885688302457 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~ 133 (336) +..|+|.+||+++ ++|+++++ |||++|+|+++++++.+++|++.|++++++++.....+++.+.+..|+.++++||++ T Consensus 45 gv~v~Dl~tG~~~-~~n~d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v~i~~~~~~~~s~~~~~~~g~~~tv~dLl~ 123 (294) T 3dw0_A 45 GVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAELSA 123 (294) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEECCCGGGCCSSCHHHHHTTTTCEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999989999886-788997342255999999999999886499887836996478703799721035788667999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEC------CCCCCCCCCCCCHHHHHHHHHHHCCCCEE Q ss_conf 889987777765455420100578999888768872661222002------45433334453013455555420136204 Q gi|254780698|r 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKN------ASGLHDKNQITTARDQAILGILLRKNFPQ 207 (336) Q Consensus 134 ~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~n------p~Gl~~~~~~tta~Dla~l~~~~~~~~p~ 207 (336) ++++.|+|+|+.+|+|+++|.+ .+|+.++++|++++.+.+ +.+..+..+.+|++|++.+...+..... T Consensus 124 ~mi~~SdN~Aa~~L~~~lgg~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~t~~d~a~~l~~l~~~~~- 197 (294) T 3dw0_A 124 AAVQYSDNAAANLLLKELGGPA-----GLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSA- 197 (294) T ss_dssp HHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSSS- T ss_pred HHHHHCCHHHHHHHHHHHCCCC-----HHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC- T ss_conf 9997375999999999867751-----6999999807333204788764458899875451559999999999983875- Q ss_pred EEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCC-CEEEEEEEEC-CEEEEEEEEC-C-----CCHHHHH Q ss_conf 677611565434--786997210102576870056522423337-1799999978-9799999817-9-----9878999 Q gi|254780698|r 208 YYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYK-DDPIVAVVMG-M-----PTSQERD 277 (336) Q Consensus 208 ~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG-~clv~~a~~~-g~~lI~Vvlg-~-----~s~~~R~ 277 (336) .....+.....+ +.....+.++.+....+..|.|||+++.+| +|.++.+.++ ++++|.|||- . +..+.-. T Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~dvgiv~~~~~~~~iiaV~~~~~~~~~~~~~~li 277 (294) T 3dw0_A 198 LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 277 (294) T ss_dssp SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHH T ss_conf 34678999999872575477511014889978998731367876488999999389987999999179999989999999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998401 Q gi|254780698|r 278 QKALELITSFLEK 290 (336) Q Consensus 278 ~~~~~Ll~~~f~~ 290 (336) .+..+++..+|+. T Consensus 278 ~~iar~v~~~l~~ 290 (294) T 3dw0_A 278 AAAARLALEGLGV 290 (294) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999723 No 16 >2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A* Probab=100.00 E-value=1.9e-33 Score=217.18 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=174.6 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC-CCCCCCCCCCCEEEEEH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124-54432257885688302 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ-NPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~-~~s~~~l~~g~~~tv~d 130 (336) ..+..++|.+||+++ +.|++..+ |||+.|+|+++.+++.+++|+++|++++++....+.. .++...+.+|+.++++| T Consensus 35 ~~~v~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~G~l~ld~~v~i~~~~~~~~~~~~~~~~~g~~~tl~~ 113 (298) T 2j9o_A 35 TAGLYFFNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMRPDLIAPEAGTLQYQKPNSQYAALE 113 (298) T ss_dssp EEEEEEEETTTCEEE-EEBTTSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEEECCGGGCCCSSCSGGGSCTTCEEEHHH T ss_pred EEEEEEEECCCCCEE-EECCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHCCCCCCCCEECCCCCEEEHHH T ss_conf 489999989999889-9889951325579999999999999874998965566873776057997520006997668999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 45788998777776545542010057899988876887266122200245433334453013455555420136204677 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~ 210 (336) |+..|++.|+|+|+.+|.+.++| .+.||+.++++|+++|+|.+|.|.....+.+|++|++.+..++..... +.. T Consensus 114 ll~~mi~~SdN~Aa~~L~~~~g~-----~~~~n~~~~~~G~~~t~~~~~~~~~~~~~~~ta~d~~~ll~~l~~~~~-~~~ 187 (298) T 2j9o_A 114 VAELMITISDNTATNMIIDRLGG-----AAELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQGEI-LSP 187 (298) T ss_dssp HHHHHHHSCCHHHHHHHHHHTTC-----HHHHHHHHHHTTCSSCBCCSCTTCTTCCSEECHHHHHHHHHHHHTTCS-SCH T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCH T ss_conf 99999985448899999999577-----499999999769977152278876566886799999999999981897-898 Q ss_pred EEEEEEEE-ECCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCCC--HHHH---HHHHHHHH Q ss_conf 61156543-478699721010257687005652242333717999999789799999817998--7899---99999999 Q gi|254780698|r 211 YFSIRKFR-YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT--SQER---DQKALELI 284 (336) Q Consensus 211 ~~s~~~~~-~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s--~~~R---~~~~~~Ll 284 (336) ..+..-.. .+.....+..+-.....+.+|.|||++..++.+......++|+++|.|||.... .... ..+..+++ T Consensus 188 ~~~~~l~~~m~~~~~~~~i~~~lp~~~~v~~KtG~~~~~~~d~giv~~~~g~~yi~avl~~~~~~~~~~~~~i~~i~~~v 267 (298) T 2j9o_A 188 RSRDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMV 267 (298) T ss_dssp HHHHHHHHHHTSCSCCSSGGGGSCTTCEEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEECSTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 99999999997087876302318999889876356126105899999479988999999479976188999999999999 Q ss_pred HHHHCC Q ss_conf 998401 Q gi|254780698|r 285 TSFLEK 290 (336) Q Consensus 285 ~~~f~~ 290 (336) .+.|+. T Consensus 268 ~~~f~~ 273 (298) T 2j9o_A 268 YQAFEK 273 (298) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999850 No 17 >1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A* Probab=100.00 E-value=1.5e-33 Score=217.69 Aligned_cols=234 Identities=15% Similarity=0.086 Sum_probs=172.1 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245443225788568830245 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl 132 (336) -+.+|+|++||++|++.|+++++ |||++|+|+++.+++.+++|++++++++++.......+++..++.+|..+++++|+ T Consensus 19 vg~~v~D~~tG~~l~~~n~d~~~~~AS~~Kl~i~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~t~~~ll 98 (265) T 1n9b_A 19 VGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELC 98 (265) T ss_dssp EEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGGGGTTTCEEHHHHH T ss_pred EEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCCCCCCCEEEHHHHH T ss_conf 99999999999386678899854448899999999999987748988671799646770468974003679726799999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 78899877777654554201005--7899988876887266122200245433334453013455555420136204677 Q gi|254780698|r 133 LALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210 (336) Q Consensus 133 ~~lli~S~NdAa~alAe~i~Gs~--~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~ 210 (336) .+|++.|+|+|+.+|++.++|.. ..|+..|+.++..+++..+.+..+.+ ....+.+|++|++.+...+..... +.. T Consensus 99 ~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ta~d~a~ll~~l~~~~~-~~~ 176 (265) T 1n9b_A 99 AAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALP-GDARDTTTPASMAATLRKLLTSQR-LSA 176 (265) T ss_dssp HHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCSCBCCCCTTGGGCCCT-TCCTTEECHHHHHHHHHHHHHSSS-SCH T ss_pred HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCC-CCH T ss_conf 873604974699999999568558999999952476641677775567889-964354379999999999974775-458 Q ss_pred EEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEEC-C--CCHHHHHHHHHHHH Q ss_conf 611565434--786997210102576870056522423337179999997897-99999817-9--98789999999999 Q gi|254780698|r 211 YFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMG-M--PTSQERDQKALELI 284 (336) Q Consensus 211 ~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg-~--~s~~~R~~~~~~Ll 284 (336) ..+..-..+ ......+..+......+.+|.|||+++.+++|+++.+..+|+ ++|.||+. . .+...|..-...+- T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dv~iv~~~~~~~~iv~v~~~~~~~~~~~~~~~i~~i~ 256 (265) T 1n9b_A 177 RSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIG 256 (265) T ss_dssp HHHHHHHHHHHTCSSSHHHHHTTSCTTCEEEEEEEEETTTEEEEEEEEESTTCCCEEEEEEEESCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 89999999874575340000123888876899744278888028999997999589999994799889899999999999 Q ss_pred HHHHC Q ss_conf 99840 Q gi|254780698|r 285 TSFLE 289 (336) Q Consensus 285 ~~~f~ 289 (336) ...++ T Consensus 257 ~~l~~ 261 (265) T 1n9b_A 257 AALIE 261 (265) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 18 >2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ... Probab=100.00 E-value=1.9e-32 Score=211.18 Aligned_cols=210 Identities=16% Similarity=0.087 Sum_probs=163.1 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) .-+.+|+|.+||+++ ++|+++++ |||++|+|+++++++.+++|++++++++++++..+..+++.....+|..+++++| T Consensus 19 ~~~v~v~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~~~~~~~~~~~~~~~~~~g~~~~~~~l 97 (263) T 2p74_A 19 RLGVALIDTADNTQV-LYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAEL 97 (263) T ss_dssp EEEEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTGGGCEEECCGGGCCSCCTTGGGGTTSEEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 699999999999889-9889970752789999999999998763899977469960666027998410367984319999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEE------CCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 5788998777776545542010057899988876887266122200------2454333344530134555554201362 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK------NASGLHDKNQITTARDQAILGILLRKNF 205 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~------np~Gl~~~~~~tta~Dla~l~~~~~~~~ 205 (336) +..|++.|+|+|+.+|+++++|.. .||+.++++|+.++.+. ++.......+.+|++|++.+..++.... T Consensus 98 l~~mi~~SdN~Aa~~L~~~igg~~-----~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~ll~~l~~~~ 172 (263) T 2p74_A 98 SAAALQYSDNTAMNKLIAQLGGPG-----GVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGH 172 (263) T ss_dssp HHHHHHHCCHHHHHHHHHHTTSHH-----HHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTSS T ss_pred HHHHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 999987444799999999848841-----799999976963387378764456788997666336999999999998388 Q ss_pred EEEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEEC Q ss_conf 04677611565434--786997210102576870056522423337179999997897-99999817 Q gi|254780698|r 206 PQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVMG 269 (336) Q Consensus 206 p~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvlg 269 (336) +.-... +..-..+ +.....+..+........+|.|||+++.+++|.++.+..+|+ ++|+||+. T Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KTG~~~~~~~~dvgiv~~~g~~~~iv~v~~ 238 (263) T 2p74_A 173 ALGETQ-RAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYF 238 (263) T ss_dssp SSCHHH-HHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEE T ss_pred CCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEE T ss_conf 788899-999999985586665432333788887888405867875789999996999689999994 No 19 >2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A Probab=99.98 E-value=2.1e-32 Score=210.94 Aligned_cols=228 Identities=17% Similarity=0.072 Sum_probs=174.5 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245443225788568830245 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl 132 (336) -+..|+|..||+++ ++|+++++ |||++|+|+++++++.++ +..|+++++++..+...+++..+..+|+.++++||+ T Consensus 19 ~gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~--~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~~l~ 95 (265) T 2wk0_A 19 LGIFALDTGTNRTV-TYRPDERFAFASTIKALTVGVLLQQKS--IEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELA 95 (265) T ss_dssp EEEEEEETTTCCEE-EESTTCEEECGGGHHHHHHHHHHHHCC--TGGGGCEECCCTTTCCSCCTTGGGCTTTCEEHHHHH T ss_pred EEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHCC--CCCCCCEEEEEHHHHCCCCCCCCCCCCCCEEHHHHH T ss_conf 99999989999888-988996472388999999999999668--777574699756653168874234689833399999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCC------CCCCCCCCCCHHHHHHHHHHHCCCCE Q ss_conf 788998777776545542010057899988876887266122200245------43333445301345555542013620 Q gi|254780698|r 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS------GLHDKNQITTARDQAILGILLRKNFP 206 (336) Q Consensus 133 ~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~------Gl~~~~~~tta~Dla~l~~~~~~~~p 206 (336) .+|++.|+|+|+.+|+++++|.. .+|..++++|++++++.+.. +.....+.+|++|++.+...+..... T Consensus 96 ~~mi~~SdN~Aa~~L~~~igg~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~l~~~~~ 170 (265) T 2wk0_A 96 DASLRYSDNTAQNLILKQIGGPE-----SLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALATSLQAFALEDK 170 (265) T ss_dssp HHHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEEEHHHHHHHHHHHHTSTT T ss_pred HHHHHHCCHHHHHHHHHHHCCCC-----HHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 99998635699999999854331-----6999999620445101345565567889974444579999999999960765 Q ss_pred EEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECC------CCHHHHH Q ss_conf 4677611565434--786997210102576870056522423337179999997-897999998179------9878999 Q gi|254780698|r 207 QYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGM------PTSQERD 277 (336) Q Consensus 207 ~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~------~s~~~R~ 277 (336) .. ...+.....+ ......+.+.......+.+|.|||+++.+|+|+++.+.. +|+++|.|||.. +..+... T Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~~~giv~~~~g~~yiiaVl~~~~~~~~~~~~~~i 249 (265) T 2wk0_A 171 LP-SEKRELLIDWMKRNTTGDALIRAGVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYDDKLI 249 (265) T ss_dssp SC-HHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECSSSCCEEEEEEEECSSTTCCCCTHHH T ss_pred CC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHH T ss_conf 68-88999999998537557432124578886699946145877078999999289988999999079998878999999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998401 Q gi|254780698|r 278 QKALELITSFLEK 290 (336) Q Consensus 278 ~~~~~Ll~~~f~~ 290 (336) .++.+++..+|+. T Consensus 250 ~~i~~~i~~~~~~ 262 (265) T 2wk0_A 250 AEATKVVVKALNM 262 (265) T ss_dssp HHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999866 No 20 >1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A Probab=99.98 E-value=1.2e-32 Score=212.32 Aligned_cols=233 Identities=13% Similarity=0.041 Sum_probs=178.7 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245443225788568830245 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl 132 (336) .+..++|..||+++ ++|+++++ |||++|+|+++++|+.+++|+++|+++|++++.....+++.++...|..++++||+ T Consensus 31 ~gv~~~D~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ll 109 (276) T 1o7e_A 31 LGVTLLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPVTRRHAGKDMTVRDLC 109 (276) T ss_dssp EEEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHH T ss_pred EEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCCCCCCCCCCEEHHHHH T ss_conf 99999989999887-77799752434999999999999988648967563311047560368974213688831099999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 7889987777765455420100--57899988876887266122200245433334453013455555420136204677 Q gi|254780698|r 133 LALITRSANDVSTAFGEFISGS--EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYK 210 (336) Q Consensus 133 ~~lli~S~NdAa~alAe~i~Gs--~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~ 210 (336) ..|++.|+|+|+++|+++++|. ...|+..|+.+...+++....+.... .....+.+|++|++.+...+..... +.. T Consensus 110 ~~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~tt~~~~a~ll~~l~~~~~-~~~ 187 (276) T 1o7e_A 110 RATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPELNSFA-KGDPRDTTTPAAMAATLQRVVLGEV-LQP 187 (276) T ss_dssp HHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCCCCCTTGGGCCB-TTBCTTEECHHHHHHHHHHHHTSSS-SCH T ss_pred HHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCC-CCH T ss_conf 99998564899999999955916899999982640112345444234788-9997784849999999999983886-787 Q ss_pred EEEEEEEE--ECCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEE--EECCEEEEEEEE---CCCCHHHHH---HHH Q ss_conf 61156543--47869972101025768700565224233371799999--978979999981---799878999---999 Q gi|254780698|r 211 YFSIRKFR--YRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSL--RYKDDPIVAVVM---GMPTSQERD---QKA 280 (336) Q Consensus 211 ~~s~~~~~--~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a--~~~g~~lI~Vvl---g~~s~~~R~---~~~ 280 (336) ........ .......+.+.......+..|.|||+++.+++|.++.. .+||+++|.||| +..+.+.|. .+. T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~d~giv~~~~~g~~~iiaV~~~~~~~~~~~~~~~ia~i 267 (276) T 1o7e_A 188 ASRQQLADWLIDNETGDACLRAGLGKRWRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQAGAISYEQRASVLAQV 267 (276) T ss_dssp HHHHHHHHHHHTCSSCTTTHHHHSCTTEEEEEEEEECSSSEEEEEEEEEETTSSCCEEEEEEEECTTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 89999999985683265422245787765767614257786356999996589967999999479999989999999999 Q ss_pred HHHHHHHHC Q ss_conf 999999840 Q gi|254780698|r 281 LELITSFLE 289 (336) Q Consensus 281 ~~Ll~~~f~ 289 (336) .+++++.|+ T Consensus 268 ~r~v~~~~~ 276 (276) T 1o7e_A 268 GRIADRLIG 276 (276) T ss_dssp HHHHHHHHC T ss_pred HHHHHHHCC T ss_conf 999998649 No 21 >3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A* Probab=99.97 E-value=3e-32 Score=209.99 Aligned_cols=230 Identities=16% Similarity=0.018 Sum_probs=173.1 Q ss_pred CCCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH Q ss_conf 7631999998896283113699888-813879999999999755589885541115367612454432257885688302 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336) ...+..|+|.+||+++ ++|+++++ |||++|+|+++++++.++.|++++++++++.......+.+.+.+..|+.+++++ T Consensus 17 g~vgv~v~Dl~tG~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~ 95 (264) T 3c5a_A 17 GSIGVYAMDTGSGATV-SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISEKYLTTGMTVAE 95 (264) T ss_dssp SEEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTSTTCEECCCGGGCCSSCHHHHHTTTTCEEHHH T ss_pred CEEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCHHH T ss_conf 8799999989999888-988997584288999999999998515306885651784276614799841105788718999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEE------CCCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 45788998777776545542010057899988876887266122200------245433334453013455555420136 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK------NASGLHDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~------np~Gl~~~~~~tta~Dla~l~~~~~~~ 204 (336) |+.++++.|+|+|+.+|+++++|.. .+|+.++++|+.++++. ++.+..+..+.+|++|++.+.+++... T Consensus 96 ll~~mi~~SdN~Aa~~L~~~ig~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~~~ll~~l~~~ 170 (264) T 3c5a_A 96 LSAAAVQYSDNAAANLLLKELGGPA-----GLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLG 170 (264) T ss_dssp HHHHHHHSCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHTS T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCH-----HHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 9976450693899999999957960-----67999998014220356777755688888654513599999999999748 Q ss_pred CEEEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCC-CEEEEEEEECC-EEEEEEEECCC---CH---H Q ss_conf 204677611565434--786997210102576870056522423337-17999999789-79999981799---87---8 Q gi|254780698|r 205 FPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKD-DPIVAVVMGMP---TS---Q 274 (336) Q Consensus 205 ~p~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG-~clv~~a~~~g-~~lI~Vvlg~~---s~---~ 274 (336) .. +....+..-..+ ......+....+....+.+|.|||+++.+| +|.++.+.++| +++|.|||... +. . T Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiivV~~~~~~~~~~~~~ 249 (264) T 3c5a_A 171 SA-LAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSE 249 (264) T ss_dssp SS-SCHHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECCGGGCEEEEEEEECTTSCCEEEEEEEECSSTTCCCCH T ss_pred CC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHH T ss_conf 76-79999999999973571055544544788866899872558887478999998089978999999369998979999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999984 Q gi|254780698|r 275 ERDQKALELITSFL 288 (336) Q Consensus 275 ~R~~~~~~Ll~~~f 288 (336) ....+..+++...| T Consensus 250 ~li~~is~~v~~~l 263 (264) T 3c5a_A 250 AVIAAAARLALEGL 263 (264) T ss_dssp HHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999970 No 22 >3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp} Probab=99.97 E-value=2.5e-32 Score=210.46 Aligned_cols=233 Identities=15% Similarity=0.055 Sum_probs=169.3 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC--CCCCCCCEEEEEH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245443--2257885688302 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK--LYLKEKTYFTTEQ 130 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~--~~l~~g~~~tv~d 130 (336) .+-.++|.+||+++ ++|+++++ |||++|+||++++++.+++|+++|+++++++......+++. .....|+..++++ T Consensus 39 ~gv~~~Dl~tG~~~-~~n~d~~~p~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (290) T 3p09_A 39 IGIYTLNTDDKTNI-KYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPITAKNVGKTLTISQ 117 (290) T ss_dssp EEEEEECC----CC-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEECCHHHHTTCCCCTTGGGCTTSEEEHHH T ss_pred EEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCEEECCCCEEHHHH T ss_conf 99999989999889-88899750426799999999999986548977665168529995136887543434883656999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE Q ss_conf 457889987777765455420100--578999888768872661222002454333344530134555554201362046 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGS--EKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs--~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~ 208 (336) |.+ +++.|+|+||.+|+++++|. ..+|++.|+.++.+++.....+.++.+.+ ..|++||+|++.+.+++.... .+ T Consensus 118 l~~-~~~~SdN~aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~-~~n~tTa~dla~ll~~l~~~~-~~ 194 (290) T 3p09_A 118 LNY-AAILSDSPASNILVRELGGLQNLNKFIKKLGDNDTIITADEPEINYTQPHS-NINKTTPKAITKDIYKLAFGN-IL 194 (290) T ss_dssp HHH-HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTTB-CTTEECHHHHHHHHHHHHHSS-SS T ss_pred HHH-CCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCC-CC T ss_conf 975-044678299999999963854899999983972321267763223578997-556348999999999997189-88 Q ss_pred EEEEEEEEEEECCEE--EEEECHHCCCCCCCEEEEECCCCCCC-CEEEEEEE-ECCEEEEEEEECCCCH-------HHHH Q ss_conf 776115654347869--97210102576870056522423337-17999999-7897999998179987-------8999 Q gi|254780698|r 209 YKYFSIRKFRYRNRI--ITNHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLR-YKDDPIVAVVMGMPTS-------QERD 277 (336) Q Consensus 209 ~~~~s~~~~~~~~~~--~~n~N~lL~~~~g~~G~KTG~T~~AG-~clv~~a~-~~g~~lI~Vvlg~~s~-------~~R~ 277 (336) .+..+.....+.... ..+.+.......+.+|.|||+++.+| +|.++.+. ++|+++|.|||+.... ..-. T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~g~~yii~V~~~~~~~~~~~~~~~~i 274 (290) T 3p09_A 195 DKKHKDIFIKYLQDNNTGANRIAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTNPNDKNAPSNEEII 274 (290) T ss_dssp CHHHHHHHHHHHHHCCTTTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECTTCTTCCCCHHHH T ss_pred CHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHH T ss_conf 98999999999843851322110148988779960356567875789999982899879999990689754759999999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998401 Q gi|254780698|r 278 QKALELITSFLEK 290 (336) Q Consensus 278 ~~~~~Ll~~~f~~ 290 (336) .+..+++-..|.. T Consensus 275 a~i~~~v~~~~~~ 287 (290) T 3p09_A 275 QQAAKLIANDLTN 287 (290) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999987 No 23 >1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A Probab=99.97 E-value=8.6e-32 Score=207.26 Aligned_cols=215 Identities=13% Similarity=0.008 Sum_probs=163.3 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) ..+..|+|.+||+++ ++|+++++ |||++|+|+++.+++.+++|++.++++++++......+++...+..|+.++++|| T Consensus 18 ~~gv~v~Dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~i~~g~l~~~~~v~~~~~~~~~~~~~~~~~~g~~~t~~~l 96 (265) T 1bue_A 18 RIGVYALDTGSGKSF-SYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDM 96 (265) T ss_dssp EEEEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSSCTTCEECCTTSCCCSSCHHHHHTTTTCEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCEECCCCCCCCHHHH T ss_conf 799999999999888-8899985873899999999999998761898866538975766037997312268971139999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC--CEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 5788998777776545542010057899988876887266122--20024543333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT--IYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t--~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +.+|++.|+|+|+.+|+++++|+...+...|++.+.+.....+ +..++.+.....+++|++|++.+..++..... +. T Consensus 97 l~~mi~~SdN~Aa~~l~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~a~ll~~l~~~~~-~~ 175 (265) T 1bue_A 97 AAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAKSLKTLALGNI-LS 175 (265) T ss_dssp HHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHHTTCSSCBCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHSSS-SC T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CC T ss_conf 99999856679999999984485679999999851443212466454558989986552069999999999984786-78 Q ss_pred EEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCE-EEEEEEE-CCEEEEEEEEC Q ss_conf 7611565434--78699721010257687005652242333717-9999997-89799999817 Q gi|254780698|r 210 KYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN-IVTSLRY-KDDPIVAVVMG 269 (336) Q Consensus 210 ~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~c-lv~~a~~-~g~~lI~Vvlg 269 (336) ...+.....+ +.....+.+.......+.+|.|||++..+|.| .++.+.. +|+++|.|||. T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiiaV~~ 239 (265) T 1bue_A 176 EHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYT 239 (265) T ss_dssp HHHHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEE T ss_conf 8899999999834755655322347888768997557777773689999985999889999994 No 24 >1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1 Probab=99.97 E-value=4e-31 Score=203.31 Aligned_cols=236 Identities=17% Similarity=0.115 Sum_probs=172.4 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) ..+..|+|..||+++ +.|+++++ |||++|+|+++.++++++.|+++|+++++++......+++...+..|..++++|| T Consensus 20 ~~gv~v~d~~tg~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~i~~~~~~~~~~~~~~~~~~g~~~s~~~l 98 (271) T 1hzo_A 20 RLGVALINTEDNSQI-TYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAEL 98 (271) T ss_dssp EEEEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHHSTTGGGCEECCCGGGCCSCCTTGGGCTTTCEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCHHHH T ss_conf 699999989999989-9889970723889999999999997453898878559975999625787533468985109999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 578899877777654554201005--789998887688726612220024543333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~--~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +..|++.|+|+|+.+|++.++|.+ .+|+..|+..+..++.... +.++.+.....+.+||+|++.+...+....+... T Consensus 99 l~~mi~~SdN~Aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~-~~~~~~~~~~~~~tTa~d~a~ll~~l~~~~~~~~ 177 (271) T 1hzo_A 99 SAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEP-ELNTAIHGDPRDTTSPIAMAKSLQALTLGDALGQ 177 (271) T ss_dssp HHHHHHTCCHHHHHHHHHHHTSHHHHHHHHHHTTCSSCCCCCCTT-GGGCCCTTCCTTEECHHHHHHHHHHHHTSSSSCH T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH T ss_conf 999998544499999999836907899999993634331467765-4556789987674389999999999973886566 Q ss_pred EEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECC---CC---HHHHHHHH Q ss_conf 7611565434--786997210102576870056522423337179999997-897999998179---98---78999999 Q gi|254780698|r 210 KYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGM---PT---SQERDQKA 280 (336) Q Consensus 210 ~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~---~s---~~~R~~~~ 280 (336) . .+.....+ ...........+....+.+|.|||+++.+++|.++.+.. +|+++|+|||.. ++ ...-..+. T Consensus 178 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~yiv~v~~~~~~~~~~~~~~~i~~i 256 (271) T 1hzo_A 178 S-QRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDIIAKA 256 (271) T ss_dssp H-HHHHHHHHHHTCSSCTTTGGGGSCTTSEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEEECSSTTCCCCHHHHHHH T ss_pred H-HHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 7-899999998277636633334578615999982787777479999999389998999999579999979999999999 Q ss_pred HHHHHHHHCCC Q ss_conf 99999984015 Q gi|254780698|r 281 LELITSFLEKK 291 (336) Q Consensus 281 ~~Ll~~~f~~~ 291 (336) .+++...|.+- T Consensus 257 a~~v~~~~~~~ 267 (271) T 1hzo_A 257 AEIVTKEISNS 267 (271) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHHC T ss_conf 99999999857 No 25 >1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A Probab=99.96 E-value=1.8e-29 Score=193.36 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=165.6 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHH Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245443225788568830245 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGI 132 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl 132 (336) .+..|+|.+||+++ +.|+++++ |||++|+|+++.++++++.|++++++.+++.......+++.....+|+.++++||+ T Consensus 23 ~gv~v~D~~tG~~~-~~n~d~~~~~AS~~Kl~~~~a~l~~~~~g~l~~~~~~~~~~~~~~~~s~~~~~~~g~~~t~~~ll 101 (271) T 1g6a_A 23 IGVSVLDTQNGEYW-DYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDAC 101 (271) T ss_dssp EEEEEEETTTTEEE-EESTTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCGGGCCSSCTTGGGCTTSEEEHHHHH T ss_pred EEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCCCCCEEEHHHHH T ss_conf 99999989999888-98999748428999999999999998639988675278648996059984012689724699999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC------CCCCCCCCHHHHHHHHHHHCCCCE Q ss_conf 78899877777654554201005789998887688726612220024543------333445301345555542013620 Q gi|254780698|r 133 LALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------HDKNQITTARDQAILGILLRKNFP 206 (336) Q Consensus 133 ~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl------~~~~~~tta~Dla~l~~~~~~~~p 206 (336) .++++.|+|+|+..|+++++|.+ .+|..++++|+.++.+.+..+. ....+.+|+.+++.+...+....+ T Consensus 102 ~~~l~~SdN~A~~~L~~~lg~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~l~~~~~ 176 (271) T 1g6a_A 102 FATMTTSDNTAANIILSAVGGPK-----GVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKAIASTLNKFLFGSA 176 (271) T ss_dssp HHHHHHCCHHHHHHHHHHTTHHH-----HHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHHHSSS T ss_pred HHHHHCCCHHHHHHHHHHHCCCH-----HHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 88774483799999999847954-----8999999837443322677765557889973334069999999999983774 Q ss_pred EEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCE-EEEEEEE-C--CCCHHHHHHHH Q ss_conf 4677611565434--786997210102576870056522423337179999997897-9999981-7--99878999999 Q gi|254780698|r 207 QYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD-PIVAVVM-G--MPTSQERDQKA 280 (336) Q Consensus 207 ~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~-~lI~Vvl-g--~~s~~~R~~~~ 280 (336) +....+..-..+ ......+..+......+.+|.|||+++.+++|.++.+.++++ ++|.+|+ . ..+...|..-. T Consensus 177 -~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~v~~KtG~~~~~~~~~~giv~~~~~~~yviaV~~~~~~~~~~~~~~~i 255 (271) T 1g6a_A 177 -LSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLAQTQASMEERNDAI 255 (271) T ss_dssp -SCHHHHHHHHHHHHTCSSCTTTGGGGCCTTCEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEESCCCCHHHHHHHH T ss_pred -CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHH T ss_conf -3367899999998526106654434478887599982415888778999999689988999999369999989999999 Q ss_pred HHHHHHHHCCC Q ss_conf 99999984015 Q gi|254780698|r 281 LELITSFLEKK 291 (336) Q Consensus 281 ~~Ll~~~f~~~ 291 (336) .++-...|+.+ T Consensus 256 ~~is~~i~~~~ 266 (271) T 1g6a_A 256 VKIGHSIFDVY 266 (271) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 26 >1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1 Probab=99.96 E-value=2.2e-30 Score=198.87 Aligned_cols=228 Identities=15% Similarity=0.030 Sum_probs=169.6 Q ss_pred CCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC----CCCCCCCCCCEEEE Q ss_conf 31999998896283113699888-81387999999999975558988554111536761245----44322578856883 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFTT 128 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~----~s~~~l~~g~~~tv 128 (336) -+..|+|.+||+++ ++|+++++ |||++|+|+++++|+.+++|+++++++++++......+ .+...+..|+.+|+ T Consensus 18 ~gv~v~dl~tg~~~-~~n~d~~~~~AS~~Kl~~a~~~l~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 96 (266) T 1bsg_A 18 LGVYAYDTGSGRTV-AYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGAPETGKPQNLANGMTV 96 (266) T ss_dssp EEEEEEETTTCCEE-EESTTSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEECCCHHHHHHHTCCTTTTSHHHHHHCEEH T ss_pred EEEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCH T ss_conf 99999989999889-98899805238999999999999998728998676799616772246775542101068983139 Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEE------CCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 0245788998777776545542010057899988876887266122200------2454333344530134555554201 Q gi|254780698|r 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK------NASGLHDKNQITTARDQAILGILLR 202 (336) Q Consensus 129 ~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~------np~Gl~~~~~~tta~Dla~l~~~~~ 202 (336) +||++++++.|+|+|+.+|+++++|.. .+|+..+++|+..+... ++.+.....+.+|++|++.+..++. T Consensus 97 ~~ll~~mi~~SdN~Aa~~L~~~~g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tta~d~a~ll~~~~ 171 (266) T 1bsg_A 97 EELCEVSITASDNCAANLMLRELGGPA-----AVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLV 171 (266) T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTSTH-----HHHHHHHHTTCSSCCCCSCTTGGGCCCTTCCTTEECHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999866999999999837936-----899999996056530357666556788887666257999999999996 Q ss_pred CCCEEEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEECCCC------H Q ss_conf 36204677611565434--786997210102576870056522423337179999997-89799999817998------7 Q gi|254780698|r 203 KNFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVMGMPT------S 273 (336) Q Consensus 203 ~~~p~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvlg~~s------~ 273 (336) +. +.+....+.....+ ......+...........+|.|||++..+++|.++.... +|+++|.|||...+ . T Consensus 172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~~ii~V~~~~~~~~~~~~ 250 (266) T 1bsg_A 172 LG-DALNPRDRRLLTSWLLANTTSGDRFRAGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAARD 250 (266) T ss_dssp TS-SSSCHHHHHHHHHHHHTCCSCTTTHHHHSCTTSEEEEEEEECSTTCEEEEEEEECTTSCCEEEEEEEECSSTTCCCC T ss_pred CC-CCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHH T ss_conf 58-73488899999999856864665344447888779988620577735799999918998899999906998776889 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 899999999999984 Q gi|254780698|r 274 QERDQKALELITSFL 288 (336) Q Consensus 274 ~~R~~~~~~Ll~~~f 288 (336) .....+..+++...| T Consensus 251 ~~~i~~ia~~v~~~~ 265 (266) T 1bsg_A 251 DGLVADAARVLAETL 265 (266) T ss_dssp HHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999999960 No 27 >3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} Probab=99.96 E-value=3.2e-30 Score=197.88 Aligned_cols=213 Identities=15% Similarity=0.017 Sum_probs=153.6 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) ..+..|+|.+||+++ ++|+++++ |||++|+||++.+++.. ++..++++++++......+++...+.+|..++++|| T Consensus 15 ~~gv~v~dl~tG~~~-~~n~~~~~~~AS~~Kl~~~~~~l~~~--~~~~ld~~~~~~~~~~~~~~~~~~~~~g~~~t~~dl 91 (260) T 3lez_A 15 RLGVYAIDTGADKEI-SYRENERFAYTSTFKPLAVGAVLQTK--SDEELEETITYSEEDLVTYSPITEQHVDEGMTLVEI 91 (260) T ss_dssp EEEEEEEETTTTEEE-EESTTSEEECGGGGHHHHHHHHHHHC--CHHHHHSEECCCGGGCCSSCTTGGGCTTTCEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHC--CCCCCCCEEEEEHHHCCCCCCCCCCCCCCCEEHHHH T ss_conf 699999989999888-88899707348899999999999856--668877269961101147997401368983339999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 578899877777654554201005--789998887688726612220024543333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSE--KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~--~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +.++++.|+|+|+..|+++++|.. ..|...|+.++.++++....+ ++.+.....+++|++|++.+..++... +.+. T Consensus 92 l~~mi~~SdN~Aa~~L~~~~g~~~~~~~~~~~~g~~~~~l~~~~~~~-~~~~~~~~~n~tTa~d~a~ll~~l~~~-~~~~ 169 (260) T 3lez_A 92 ADAAIRYSDNTAGNLLLEAMGGPDELETILRDIGDETIEMDRYETEL-NEAKPGDIRDTSTAKAMATTLQQYVLE-DVLD 169 (260) T ss_dssp HHHHHHHCCHHHHHHHHHHTTSHHHHHHHHHHTTCCSCBCCCCTTGG-GCCCTTCCTTEEEHHHHHHHHHHHHTS-SSSC T ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCC T ss_conf 99988618679999999984794468999998051332034576545-566789843440799999999999847-8788 Q ss_pred EEEEEEEEEECCEEEEEECHH--CCCCCCCEEEEECCCCCCCCEEEEEEEECCEE--EEEEEECC Q ss_conf 761156543478699721010--25768700565224233371799999978979--99998179 Q gi|254780698|r 210 KYFSIRKFRYRNRIITNHNKL--LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDP--IVAVVMGM 270 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~n~N~l--L~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~--lI~Vvlg~ 270 (336) ...+..-..+......+.+.+ .......+|.|||+++.+++|.++.+..+|.+ +|++||.. T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~~~~dvgiv~~~~~~~~~iv~V~~~ 234 (260) T 3lez_A 170 ADRREVLTNMLINNTTGDALIRAGVPDGWTVGDKTGAGGYGTRNDIGIIWPEGDEEPIVIAIMSS 234 (260) T ss_dssp HHHHHHHHHHHHTCSSCTTTGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTTCCCEEEEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEECC T ss_conf 88999999987447125434334478897789610567878768999999789935999999816 No 28 >1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1 Probab=99.96 E-value=1.2e-29 Score=194.54 Aligned_cols=231 Identities=14% Similarity=0.116 Sum_probs=164.9 Q ss_pred CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC----CCCCCCCCEEEEE Q ss_conf 1999998896283113699888-8138799999999997555898855411153676124544----3225788568830 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS----KLYLKEKTYFTTE 129 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s----~~~l~~g~~~tv~ 129 (336) +..|.|.++|++ |++|+++++ |||++|+||++++++++++|+++|+++|+++......+++ ...+..|+.+|++ T Consensus 21 gv~v~~~~~~~~-~~~n~~~~~~~AS~~Kl~~a~~~l~~i~~g~l~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 99 (282) T 1e25_A 21 GVAVWGPDDLEP-LLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFSVPVQ 99 (282) T ss_dssp EEEEECTTCSSC-EEESTTCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEEETTTSCCSSCCTHHHHSCSSEEEEEHH T ss_pred EEEEEECCCCEE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHEEECCCCEEEHH T ss_conf 999998999818-9988998455489999999999999987599883100257688874168874200210799805699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC------CCCCCCCCHHHHHHHHHHHCC Q ss_conf 24578899877777654554201005789998887688726612220024543------333445301345555542013 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL------HDKNQITTARDQAILGILLRK 203 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl------~~~~~~tta~Dla~l~~~~~~ 203 (336) ||+++|++.|+|+|+.+|++.++|.. .||..++++|+++++|.++.|. ...++.+|++|++.+..++.. T Consensus 100 ~Ll~~mi~~SdN~Aa~~L~~~lgg~~-----~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~Ta~d~~~ll~~l~~ 174 (282) T 1e25_A 100 QLLQYSVSHSDNVACDLLFELVGGPA-----ALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWTSMKGAAEILKKFEQ 174 (282) T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTHHH-----HHHHHHHHTTCCSBCCCCCHHHHHHCTTGGGGSEECHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999595199999999828846-----8999999830343123466445565557874213319999999999984 Q ss_pred CCEEEEEEEEEEEEEE--CCEEEEEECHHCCCCCCCEEEEECCCCCCCCE-----EEEEEE-ECCEEEEEEEECC---CC Q ss_conf 6204677611565434--78699721010257687005652242333717-----999999-7897999998179---98 Q gi|254780698|r 204 NFPQYYKYFSIRKFRY--RNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN-----IVTSLR-YKDDPIVAVVMGM---PT 272 (336) Q Consensus 204 ~~p~~~~~~s~~~~~~--~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~c-----lv~~a~-~~g~~lI~Vvlg~---~s 272 (336) ... +....+.....+ +.......++........++.|||+....|.. .++.+. .+|+++|.+||-. .+ T Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ktG~~~~~gg~~g~~~d~giv~~~~g~~~iiaV~~~~~~~~ 253 (282) T 1e25_A 175 KTQ-LSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDSAES 253 (282) T ss_dssp TCS-SCHHHHHHHHHHHHSCCSCTTSTTTTSCTTCCEEEEEEECCEETTEEEEEEEEEEEECTTSCEEEEEEEEEEECSC T ss_pred CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCC T ss_conf 886-6888999999998548644433123488887543214764546875348998999986999989999994599889 Q ss_pred HHHHH---HH-HHHHHHHHHCCCC Q ss_conf 78999---99-9999999840154 Q gi|254780698|r 273 SQERD---QK-ALELITSFLEKKT 292 (336) Q Consensus 273 ~~~R~---~~-~~~Ll~~~f~~~~ 292 (336) ...+. .+ ++.+.+|.+++.. T Consensus 254 ~~~~~~~i~~i~~~~~~~~~~~~~ 277 (282) T 1e25_A 254 SRTNEAIIAQVAQTAYQFELKKLS 277 (282) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 889999999999999998865035 No 29 >3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583} Probab=99.95 E-value=4.6e-28 Score=185.05 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=158.3 Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC-CCCCCCCCEEEE Q ss_conf 87631999998896283113699888-8138799999999997555898855411153676124544-322578856883 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS-KLYLKEKTYFTT 128 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s-~~~l~~g~~~tv 128 (336) ....+..|+|.+||++ ++.|+++++ |||++|+|+++++++.+++|+++|+++++++......+++ .+.+..|+.+++ T Consensus 49 ~g~~~v~~~dl~tg~~-~~~n~~~~~~~AS~~Kl~~~~~~l~~v~~G~l~l~~~v~~~~~~~~~~~~~~~~~~~g~~~sl 127 (282) T 3cjm_A 49 EGTVGISYLDLETGEQ-RSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPL 127 (282) T ss_dssp SSEEEEEEEETTTCCE-EEESTTCCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCHHHHCCCSSCSGGGSCCSEEEH T ss_pred CCEEEEEEEECCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCCCEEECCCCEEEH T ss_conf 9849999998999988-888899842218889999999999999749988777268618996158986257258982669 Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCC--- Q ss_conf 02457889987777765455420100578999888768872661222002454333344530134555554201362--- Q gi|254780698|r 129 EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF--- 205 (336) Q Consensus 129 ~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~--- 205 (336) +||+++|++.|+|+|+.+|++.++|+.. +|.+..++|+.++.+.+ .+.+|++|++.+..++.... T Consensus 128 ~dLl~~mi~~SdN~Aan~L~~~lGg~~~-----~~~~~~~~g~~~~~~~~-------~~~~T~~d~~~ll~~l~~~~~~~ 195 (282) T 3cjm_A 128 KTLQEYAITYSDNIAKNMLYDTLGGDAK-----AKREMYQRYLHKTPSIE-------EPQFSSEDALVILQKLYTEKATK 195 (282) T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTCHHH-----HHHHHHHHHTSCCCCSS-------SCEECHHHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCHH-----HHHHHHHCCCCCCCCCC-------CCCCCHHHHHHHHHHHHCCCCCC T ss_conf 9999999984126999999998298499-----99999970576688755-------67778999999999997487788 Q ss_pred EEEEEEEEEEEEEECCEEEEEECHHCC-CCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEECC-CCHHHHHH---H- Q ss_conf 046776115654347869972101025-76870056522423337179999997897999998179-98789999---9- Q gi|254780698|r 206 PQYYKYFSIRKFRYRNRIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGM-PTSQERDQ---K- 279 (336) Q Consensus 206 p~~~~~~s~~~~~~~~~~~~n~N~lL~-~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~-~s~~~R~~---~- 279 (336) |....+... .... ..++.+.. ..++.++.|||+++.+ +|.++....++ ++|.|||.. +....... + T Consensus 196 ~~~~~l~~~----l~~~--~~~~~l~~~lp~~~va~KtG~~~~~-~~d~giV~~~~-~yiiav~t~~~~~~~~~~~i~~i 267 (282) T 3cjm_A 196 PDYQAIYDS----MKQS--VFHERMETPTTQGKVAHKIGSYDEF-IHDMGILETPH-PFALAIFTKGPDNAKSAAFIASV 267 (282) T ss_dssp HHHHHHHHH----HHSC--SCCCTTCCTTTTTSEEEEEEEETTE-EEEEEEECSSS-CEEEEEEEECSCHHHHHHHHHHH T ss_pred HHHHHHHHH----HHCC--CCCCCHHCCCCCCCEEEEECCCCCC-EEEEEEEECCC-CEEEEEEECCCCHHHHHHHHHHH T ss_conf 689999999----8447--7873110258878068620265770-47899995799-88999994799807899999999 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999999840154 Q gi|254780698|r 280 ALELITSFLEKKT 292 (336) Q Consensus 280 ~~~Ll~~~f~~~~ 292 (336) ++.+.+|.+..++ T Consensus 268 s~~iy~~~~~~~~ 280 (282) T 3cjm_A 268 TDKLWQLQVSEYP 280 (282) T ss_dssp HHHHHHHHHHSCC T ss_pred HHHHHHHHHHCCC T ss_conf 9999997764279 No 30 >1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A Probab=99.95 E-value=2.6e-28 Score=186.52 Aligned_cols=232 Identities=18% Similarity=0.046 Sum_probs=156.5 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 631999998896283113699888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) +-+.+++|.+||+++ ++|+++++ |||++|+||+++++++++.|+ ++++++++......+++......++.++++++ T Consensus 14 ~~gv~~~d~~tG~~~-~~n~d~~~~~AS~~Kl~~~~~~l~~~~~g~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (258) T 1ghp_A 14 HIGVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKAL 90 (258) T ss_dssp EEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHSCGGG--GGCEEEECGGGCCSSCTTGGGGTTEEEEHHHH T ss_pred EEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCC--CCCEEEEEHHHHCCCCCCEEECCCCCEEHHHH T ss_conf 699999989999889-988997184689999999999999745689--98438974665227997423248982209999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 5788998777776545542010057--89998887688726612220024543333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~--~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) ++++++.|+|+|+.+|+++++|.+. .|...|+.++..+++....+.++.+. ...+.+|+.|++.+..++..... +. T Consensus 91 l~~mi~~SdN~aa~~l~~~l~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~-~~~~~tTa~d~a~ll~~l~~~~~-~~ 168 (258) T 1ghp_A 91 IEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSPK-SKKDTSTPAAFGKTLNKLIANGK-LS 168 (258) T ss_dssp HHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCSCTTGGGCCCTT-CCTTEECHHHHHHHHHHHTTSSS-SC T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCC-CC T ss_conf 99998616599999999981893788999996261432247766755688899-85565489999999999974886-42 Q ss_pred EEEEEEEEEECCEEEE--EECHHCCCCCCCEEEEECCCCCCC-CEEEEEEEECCE--EEEEEEEC-CCC--HHHHHHHHH Q ss_conf 7611565434786997--210102576870056522423337-179999997897--99999817-998--789999999 Q gi|254780698|r 210 KYFSIRKFRYRNRIIT--NHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKDD--PIVAVVMG-MPT--SQERDQKAL 281 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~--n~N~lL~~~~g~~G~KTG~T~~AG-~clv~~a~~~g~--~lI~Vvlg-~~s--~~~R~~~~~ 281 (336) ...+.....+-..... +.+.......+..+.|||+++.+| ++.++....+++ ++|.+|+. .++ ...|..-.. T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~~~vi~V~~~~~~~~~~~~~~li~ 248 (258) T 1ghp_A 169 KENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLIS 248 (258) T ss_dssp HHHHHHHHHHHHHCGGGTTTHHHHSCTTSEEEEEEEECSSTTCEEEEEEEECTTCCSCEEEEEEEECSSTTCCCCHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHH T ss_conf 68899999998548214012343479887588777488776527899999989997489999991799868699999999 Q ss_pred HHHHHHHC Q ss_conf 99999840 Q gi|254780698|r 282 ELITSFLE 289 (336) Q Consensus 282 ~Ll~~~f~ 289 (336) ++-...|+ T Consensus 249 ~is~~~~~ 256 (258) T 1ghp_A 249 ETAKSVMK 256 (258) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 99999997 No 31 >1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1 Probab=99.92 E-value=1.8e-25 Score=169.60 Aligned_cols=190 Identities=17% Similarity=0.058 Sum_probs=143.8 Q ss_pred CEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH Q ss_conf 1999998896283113699888-813879999999999755589885541115367612454432257885688302457 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL 133 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~ 133 (336) +..++|.+||+++ +.|+++++ |||++|+|+++.+++.+++++ +++++++++.....++......+|+.++++||+. T Consensus 61 gv~~~D~~tG~~~-~~n~d~~~~~ASt~Kl~~a~~~l~~v~~g~--ld~~v~i~~~~~~~~~~~~~~~~g~~~tl~dll~ 137 (266) T 1alq_A 61 GVYALDTKSGKEV-KFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKALIE 137 (266) T ss_dssp EEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHSSCGGG--TTCEEEECGGGCCSSCTTGGGGTTEEEEHHHHHH T ss_pred EEEEEECCCCCEE-EECCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEECHHHHHCCCCCCCCCCCCCEEHHHHHH T ss_conf 9999999999888-888998353478999999999999720478--7751675388863369731046897235999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC------CCCCCCCHHHHHHHHHHHCCCCEE Q ss_conf 88998777776545542010057899988876887266122200245433------334453013455555420136204 Q gi|254780698|r 134 ALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH------DKNQITTARDQAILGILLRKNFPQ 207 (336) Q Consensus 134 ~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~------~~~~~tta~Dla~l~~~~~~~~p~ 207 (336) ++++.|+|+|+.+|+++++|.. .||+.++++|++++++.+..+.. +..+++|++|++.+..++..... T Consensus 138 ~mi~~SdN~Aa~~L~~~lGg~~-----~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ll~~l~~~~~- 211 (266) T 1alq_A 138 ASMTYSDNTANNKIIKEIGGIK-----KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGK- 211 (266) T ss_dssp HHHHHCCHHHHHHHHHHHTCHH-----HHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHHHHHHHTTSSS- T ss_pred HHHHCCHHHHHHHHHHHHCCCH-----HHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC- T ss_conf 8775487999999999977616-----8999999747322762677765556777874444499999999999985787- Q ss_pred EEEEEEEEEEEECCEEEEEECHHCCC-CC-C-CEEEEECCCCCCC-CEEEE Q ss_conf 67761156543478699721010257-68-7-0056522423337-17999 Q gi|254780698|r 208 YYKYFSIRKFRYRNRIITNHNKLLNK-MH-N-IDGIKTGYTRNSG-FNIVT 254 (336) Q Consensus 208 ~~~~~s~~~~~~~~~~~~n~N~lL~~-~~-g-~~G~KTG~T~~AG-~clv~ 254 (336) +....+..-..+-. ...++|.+|.. .| + ..|.|||++...| +|-++ T Consensus 212 ls~~~~~~l~~~m~-~~~~~~~~l~~~lP~~~~Va~KTGt~~~~G~~~D~a 261 (266) T 1alq_A 212 LSKENKKFLLDLML-NNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVA 261 (266) T ss_dssp CCHHHHHHHHHHHH-TCGGGTTTHHHHSCTTCEEEEEEEECSSTTCEEEEE T ss_pred CCHHHHHHHHHHHH-CCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEE T ss_conf 89999999999996-396443005543999988999650577677621599 No 32 >2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi} Probab=99.85 E-value=9.3e-21 Score=141.44 Aligned_cols=208 Identities=13% Similarity=0.026 Sum_probs=143.6 Q ss_pred CCCEEEEECCCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC--CCCCCCCCCEEEEE Q ss_conf 631999998896283113699888-813879999999999755589885541115367612454--43225788568830 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFKQDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNP--SKLYLKEKTYFTTE 129 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~Kn~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~--s~~~l~~g~~~tv~ 129 (336) ..+.+|+|.+||+|| +.|++.++ |||++|+||++.+||.+++|++++++.+..........+ .......|..+++. T Consensus 21 ~~~~~V~D~~tG~~l-a~n~d~~~~pgSt~K~~ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~ 99 (318) T 2wuq_A 21 TGSFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTGLSRFRHPARVAVD 99 (318) T ss_dssp EEEEEEEETTTCCEE-EESTTCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCGGGGCSSCEEEEHH T ss_pred EEEEEEEECCCCCEE-EECCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 499999999899889-9889973737979999999999987654997875456640353137997401357888740399 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCC-------------------------- Q ss_conf 245788998777776545542010057899988876887266122200245433-------------------------- Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLH-------------------------- 183 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~-------------------------- 183 (336) +++..++..|.|+++..+++..+. +.++..++++|+.++.+....+.. T Consensus 100 ~~~~~~~~~S~n~a~~~l~~~~g~------~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (318) T 2wuq_A 100 DLLYLSTSVSDGTASDALFEITPP------AQVEQMVREWGFRDLTVRHSMRELSETPAERFESADAHLAHALAISAGTS 173 (318) T ss_dssp HHHHHHHHSCCHHHHHHHHHHSCH------HHHHHHHHHTTCCSCCCCCCTTC--------------------------- T ss_pred HHHHHHHHHCCCHHHHHHHHHCCH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCH T ss_conf 999999982772266778875299------98754788708876446566654566655555520245666423656576 Q ss_pred -----------CCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEEC------------CEEEEE-ECHHCCCCCCCEE Q ss_conf -----------3344530134555554201362046776115654347------------869972-1010257687005 Q gi|254780698|r 184 -----------DKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR------------NRIITN-HNKLLNKMHNIDG 239 (336) Q Consensus 184 -----------~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~------------~~~~~n-~N~lL~~~~g~~G 239 (336) ...+.+++++++.+...+......... ......... ...... .-..+.......+ T Consensus 174 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~m~~~~~~g~~~~~~~~~g~~va 252 (318) T 2wuq_A 174 GRGHRVPQLDVARANTGTARAFVDLLEALWAPVLTGPR-PGRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWS 252 (318) T ss_dssp ---CCSGGGCTTTSCEECHHHHHHHHHHHHGGGCCCC--------CCCHHHHHHHHHHHHTCCCCSSSHHHHCBTTEEEE T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE T ss_conf 78999999985288303489999999750256545566-54334567999999999998734648872013478998899 Q ss_pred EEECCCCCCCCEEEEEE-EECCEEEEEEEEC Q ss_conf 65224233371799999-9789799999817 Q gi|254780698|r 240 IKTGYTRNSGFNIVTSL-RYKDDPIVAVVMG 269 (336) Q Consensus 240 ~KTG~T~~AG~clv~~a-~~~g~~lI~Vvlg 269 (336) .|||++..+ ++.++.+ ..||++++++|+- T Consensus 253 gKTGT~~~~-~~~~~~~~~~d~~~~~v~V~~ 282 (318) T 2wuq_A 253 SKTGTLLNL-RHEVGVVEHADGQVFAVAVLT 282 (318) T ss_dssp EEEEEETTE-EEEEEEEEETTSCEEEEEEEE T ss_pred EEEECCCCC-CEEEEEEECCCCCEEEEEEEE T ss_conf 980257783-166999996898949999998 No 33 >3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* Probab=99.46 E-value=2.1e-12 Score=91.60 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=97.5 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHH Q ss_conf 830245788998777776545542010-------05789998887688726612--220024543333445301345555 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFISG-------SEKKFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAIL 197 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~G-------s~~~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l 197 (336) ++.+++..|+-.|.|-.|..|...++. +.+.-...+....+++|+.. .++.+.+||...+ ..|+++|..+ T Consensus 272 pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGLSr~N-~it~~~l~~l 350 (453) T 3a3d_A 272 PLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGIRFGNSILADGSGLSRHN-LVAPKTMLSV 350 (453) T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTTCCCTTCBCCCSSSCCTTC-BBCHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCC-CCCHHHHHHH T ss_conf 099999999845971899999999988745898607788988888999729997652552777777344-3189999999 Q ss_pred HHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHCCC-CCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE Q ss_conf 542013620467761156543478699721010257-687005652242333717999999-78979999981 Q gi|254780698|r 198 GILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNK-MHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336) Q Consensus 198 ~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~-~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336) ..++..+ |.+..+.+.-.......++.++..+... -.|-.-.|||+-+ .-.||++... ++|+.++.+|| T Consensus 351 L~~~~~~-~~~~~~~~sLpv~G~~Gtl~~r~~~~~~~~~g~v~aKTGtL~-~v~sLaGyi~~~~G~~~~fsi~ 421 (453) T 3a3d_A 351 LEYIAKN-EDKLHLMETFPIAGVDGTISGRGGLISPPLVKNVIAKTGSLK-GVYNLAGFMTNARGEKVAFVQF 421 (453) T ss_dssp HHHHHHT-HHHHCCGGGSCBTTTSGGGTTCGGGSSTTTTTTCEEEEEEET-TEEEEEEEEECTTSCEEEEEEE T ss_pred HHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEE T ss_conf 9998759-527899973880577775456565567776684999872637-8458799999699899999999 No 34 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* Probab=99.38 E-value=5.2e-12 Score=89.28 Aligned_cols=136 Identities=11% Similarity=0.141 Sum_probs=93.6 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 83024578899877777654554201------005789998887688726612--2200245433334453013455555 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFIS------GSEKKFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAILG 198 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~------Gs~~~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l~ 198 (336) ++.++++.|+-.|.|-.|..|...++ ++.+.-...+.+..+++|... ..+.+.+||.. .+..|+++|+.+. T Consensus 287 pL~~lv~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~l~~~gi~~~~~~l~DGSGLSr-~Nrisp~~l~~lL 365 (462) T 1w5d_A 287 PLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGISH-IDAVSSDQLSQLL 365 (462) T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHGGGGTCCGGGCBCSCSSSCCT-TCBBCHHHHHHHH T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCCCHHHHHHHH T ss_conf 199999999843872999999999999737998668899999999997278866527755887875-5652999999999 Q ss_pred HHHCCCCEEEEEEEEEEEEEECC-------EEEEEECHHCC-CCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEEC Q ss_conf 42013620467761156543478-------69972101025-7687005652242333717999999-789799999817 Q gi|254780698|r 199 ILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVMG 269 (336) Q Consensus 199 ~~~~~~~p~~~~~~s~~~~~~~~-------~~~~n~N~lL~-~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvlg 269 (336) .++..+ |.+..+... ....+ .++. |++.. .-.|-.=.|||+.+ .-.||.+... ++|++++.++|- T Consensus 366 ~~~~~~-~~~~~~~~s--LPvaG~~~~~v~GTL~--~R~~~~~~~g~v~aKTGTL~-~v~aLaGyv~t~~G~~~~Fsi~~ 439 (462) T 1w5d_A 366 YDIQDQ-SWFSAYLNS--LPVAGNPDRMVGGTLR--NRMKGTPAQGKVRAKTGSLS-TVSSLSGYAETKSGKKLVFSILL 439 (462) T ss_dssp HHHTTS-TTHHHHHHH--SCBTTCSSHHHHGGGT--TSSTTSTTTTTEEEEEEEET-TEEEEEEEEECSSSCEEEEEEEE T ss_pred HHHHHC-CCHHHHHHH--CCCCCCCCCCCCCCHH--HHCCCCCCCCEEEEEEEEEC-CCEEEEEEEECCCCCEEEEEEEE T ss_conf 998859-207899972--9847887877687256--54247876774999975238-94685899998998999999995 No 35 >2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* Probab=99.24 E-value=7.2e-11 Score=82.45 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=91.5 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH-HHHHHCC--CCCCEECCCCCCCCCCCCCHHHHH Q ss_conf 8830245788998777776545542010-------05789998887-6887266--122200245433334453013455 Q gi|254780698|r 126 FTTEQGILALITRSANDVSTAFGEFISG-------SEKKFAILMSN-KAKKIGM--QNTIYKNASGLHDKNQITTARDQA 195 (336) Q Consensus 126 ~tv~dLl~~lli~S~NdAa~alAe~i~G-------s~~~Fv~~MN~-~A~~lGl--~~t~f~np~Gl~~~~~~tta~Dla 195 (336) .++.++++.|+..|.|-+|.+|.+.+++ +.......+.. ....+|+ .+..+.+.+||...+ ..|++++. T Consensus 274 ~pL~~l~~~m~~~SdN~~Ae~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dgSGLSr~n-~~t~~~~~ 352 (458) T 2ex2_A 274 APLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLSRHN-LIAPATMM 352 (458) T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTSCCCCTTCBCCCSSSCCTTC-BBCHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC-CCCHHHHH T ss_conf 77999999985358279999999999887448987266799999999998608886552430478876556-55999999 Q ss_pred HHHHHHCCCCEEEEEEEEEEEEEECCEEEEEECHHC-CCCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE Q ss_conf 555420136204677611565434786997210102-57687005652242333717999999-78979999981 Q gi|254780698|r 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM 268 (336) Q Consensus 196 ~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL-~~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl 268 (336) .+..++... |.+..+.+.-.......++.++..+- ....|..-.|||+.+ .-.|+++... ++|++++.++| T Consensus 353 ~~L~~~~~~-~~~~~~~~~lpi~g~~Gtl~~r~~~~~~~~~g~v~aKTGtl~-~v~~laGyv~~~~g~~~~fai~ 425 (458) T 2ex2_A 353 QVLQYIAQH-DNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSLQ-GVYNLAGFITTASGQRMAFVQY 425 (458) T ss_dssp HHHHHHHHT-HHHHCCGGGSCBTTTSGGGTTCHHHHHTTCTTTEEEEEEEET-TEEEEEEEEECTTSCEEEEEEE T ss_pred HHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCEEEEEEEECCCCCEEEEEEE T ss_conf 999998849-624789973882467676566555566887886999555336-8679899999799899999999 No 36 >3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae} Probab=99.17 E-value=3e-10 Score=78.80 Aligned_cols=205 Identities=16% Similarity=0.085 Sum_probs=121.3 Q ss_pred CEEEEECCCCEEEE-ECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHH Q ss_conf 19999988962831-136-99888-8138799999999997555898855411153676124544322578856883024 Q gi|254780698|r 55 SSIVIDVNKNQMTG-FKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQG 131 (336) Q Consensus 55 sAiv~D~~tG~ILy-~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dL 131 (336) +.+++|.++|+++. ..| +.+++ |+|+-|+.|++.+|| .|.++.++.+.... +..-. .+.+....- T Consensus 43 ~~vi~d~~~~~~~~~~~nRA~~~~~PgSTFKi~~a~aaLe---~G~i~~~~~~~~~~------g~~~~---~~~~~~~~t 110 (265) T 3hbr_A 43 VVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALD---LGVVKDEHQVFKWD------GQTRD---IATWNRDHN 110 (265) T ss_dssp EEEEEETTTTEEEESCHHHHTCEECCGGGGHHHHHHHHHH---TTSSCCTTCCBCCC------SCCCS---SGGGSSCBC T ss_pred EEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEECCC------CCCCC---CCCCCCCCC T ss_conf 8999988999577506656527889973389999999998---69859977044189------95655---887589989 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC--CCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 57889987777765455420100578999888768872661222002454--3333445301345555542013620467 Q gi|254780698|r 132 ILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG--LHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 132 l~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G--l~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +...+..|.|...+-+++.++. +.|.+.++++|..+........ +...+...|+..++.+...+..+-..+. T Consensus 111 l~~Al~~S~N~~f~~l~~~iG~------~~~~~~~~~~G~G~~~~~~~~~~~w~~g~l~iTPlq~a~~~~~ian~~~~~s 184 (265) T 3hbr_A 111 LITAMKYSVVPVYQEFARQIGE------ARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYHNKLHVS 184 (265) T ss_dssp HHHHHHTTCHHHHHHHHHHHCH------HHHHHHHHHHTCTTCCC-CCTTTHHHHSSCCEEHHHHHHHHHHHHTTCSSSC T ss_pred HHHHHHHCCHHHHHHHHHHHCC------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCC T ss_conf 9999997080999999777293------7789999986999988898866440379700108999999999983996888 Q ss_pred EEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCCE---EEEEEEECCEEEEEEEEC-CC---CHHHHHHHHHH Q ss_conf 761156543478699721010257687005652242333717---999999789799999817-99---87899999999 Q gi|254780698|r 210 KYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFN---IVTSLRYKDDPIVAVVMG-MP---TSQERDQKALE 282 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~c---lv~~a~~~g~~lI~Vvlg-~~---s~~~R~~~~~~ 282 (336) ... ....+...... ....+..++|||+....+.. ||+.+..++.+++.+|+- .+ ....|-.-+++ T Consensus 185 ~~~---~~~v~~~m~~~-----~~~g~~vaGKTGTa~~~~~~~~WfvG~~~~~~~~~~~av~i~~~~~~~~~~a~~i~~~ 256 (265) T 3hbr_A 185 ERS---QRIVKQAMLTE-----ANGDYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMDMPTSDGLGLRQAITKE 256 (265) T ss_dssp HHH---HHHHHHHTEEE-----ECSSCEEEEEEEEECSSSSCEEEEEEEEECSSCEEEEEEEEECSSGGGTTHHHHHHHH T ss_pred HHH---HHHHHHHHHHH-----HCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHH T ss_conf 899---99999998863-----3158057851035546899868999999879986999999756998875999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780698|r 283 LIT 285 (336) Q Consensus 283 Ll~ 285 (336) +|. T Consensus 257 il~ 259 (265) T 3hbr_A 257 VLK 259 (265) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 37 >1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A* Probab=99.12 E-value=1.1e-09 Score=75.32 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=90.7 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 83024578899877777654554201------005789998887688726612--2200245433334453013455555 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFIS------GSEKKFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAILG 198 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~------Gs~~~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l~ 198 (336) ++.++++.|+-.|.|--|..|...++ |+.+.-...+.+..+++|+.. .++.|.+||...+ ..|+++|..+. T Consensus 286 pL~~il~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~n-riSp~~l~~lL 364 (489) T 1w79_A 286 ELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGLSRGN-LVTADTVVDLL 364 (489) T ss_dssp EHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTC-BBCHHHHHHHH T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHHHH T ss_conf 89999999986366599999999999974489977899999999998658985674770588788666-65999999999 Q ss_pred HHHCCCCEEEEEEEEEEEEEECC-------EEEEEECHHCC-CCCCCEEEEECCCCCCCCEEEEEEEE-CCEEEEEEEE Q ss_conf 42013620467761156543478-------69972101025-76870056522423337179999997-8979999981 Q gi|254780698|r 199 ILLRKNFPQYYKYFSIRKFRYRN-------RIITNHNKLLN-KMHNIDGIKTGYTRNSGFNIVTSLRY-KDDPIVAVVM 268 (336) Q Consensus 199 ~~~~~~~p~~~~~~s~~~~~~~~-------~~~~n~N~lL~-~~~g~~G~KTG~T~~AG~clv~~a~~-~g~~lI~Vvl 268 (336) .++..+ |.+..+.+. ..+.+ .++. |++.. .-.|..=.|||+.+ .-.||.+.... +|+ ++.++| T Consensus 365 ~~~~~~-~~~~~~~~s--LPiaG~~~~~vdGTL~--~R~~~~~~~g~v~aKTGTL~-~V~sLaGyv~~~~G~-l~Fsi~ 436 (489) T 1w79_A 365 GQAGSA-PWAQTWSAS--LPVAGESDPFVGGTLA--NRMRGTAAEGVVEAKTGTMS-GVSALSGYVPGPEGE-LAFSIV 436 (489) T ss_dssp HHHHTS-TTHHHHHHH--SCBTTCSSHHHHGGGT--TSSTTSTTTTTCEEECCEET-TEEEEEEEECCTTCC-EEEEEE T ss_pred HHHHHC-CCHHHHHHH--CCCCCCCCCCCCCCHH--HHCCCCCCCCEEEEEEEEEC-CCEEEEEEEECCCCC-EEEEEE T ss_conf 998859-317899973--8857887777787556--64247876784999985006-947838999969998-999999 No 38 >1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1 Probab=99.02 E-value=1.5e-09 Score=74.58 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=117.7 Q ss_pred CCEEEEECCCCEEE-EECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH Q ss_conf 31999998896283-1136-99888-813879999999999755589885541115367612454432257885688302 Q gi|254780698|r 54 YSSIVIDVNKNQMT-GFKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 54 ~sAiv~D~~tG~IL-y~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336) -+.|++|.+||+++ |..| ...|+ |+|+=|++|++.+||. |.+..++.+...... ....... .-.. T Consensus 35 G~~vv~d~~tg~~~~~n~n~~~~~~~PGSTfK~~~~~aaLe~---g~~~~~~~~~~~~~~------~~~~~~~---~g~~ 102 (262) T 1nrf_A 35 GGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALES---GIITKNDSHMTWDGT------QYPYKEW---NQDQ 102 (262) T ss_dssp EEEEEEETTTTEEEEECHHHHHSCBCCGGGGHHHHHHHHHHH---TSSCSSCCCBCCCCC------CCSSTTT---SSCB T ss_pred EEEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHC---CCCCCCCEEECCCCC------CCCCCCC---CCCC T ss_conf 589999899997863198997577899752899999999985---999998745659985------0367888---9997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCCCCHHHHHHHHHHHCCCC---- Q ss_conf 457889987777765455420100578999888768872661222002454-333344530134555554201362---- Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKNF---- 205 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-l~~~~~~tta~Dla~l~~~~~~~~---- 205 (336) -+...+..|.|-..+-|+..++. +.|.+.++++|+.+.....|.. +.......|+..|+.+...+...- T Consensus 103 ~l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G~~~~ 176 (262) T 1nrf_A 103 DLFSAMSSSTTWYFQKLDRQIGE------DHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNEFDFK 176 (262) T ss_dssp CHHHHHHHTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTTTCCC T ss_pred CHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99999997570988523242585------789999998399998889863787479755239999999999954688778 Q ss_pred EEEEEEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCC----EEEEEEEECCEEEEEEEE Q ss_conf 046776115654347869972101025768700565224233371----799999978979999981 Q gi|254780698|r 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF----NIVTSLRYKDDPIVAVVM 268 (336) Q Consensus 206 p~~~~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~----clv~~a~~~g~~lI~Vvl 268 (336) |++.+... +.-.......+..+.|||+....|. -||+.+..++.+++.+|+ T Consensus 177 p~~~~~~~------------~~~~~~~~~~~~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~ 231 (262) T 1nrf_A 177 QSNIETVK------------DSIRLEESNGRVLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVH 231 (262) T ss_dssp HHHHHHHH------------HHHEEEEETTEEEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEE T ss_pred HHHHHHHH------------HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEE T ss_conf 89999998------------78766544123356640254368998628999999879985999999 No 39 >2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A* Probab=98.89 E-value=1.4e-08 Score=68.71 Aligned_cols=190 Identities=12% Similarity=0.075 Sum_probs=111.5 Q ss_pred CCEEEEECCCCEEEEEC-C-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH Q ss_conf 31999998896283113-6-99888-813879999999999755589885541115367612454432257885688302 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFK-Q-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~K-n-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336) -+++++|.+||+++.-+ + ..+++ |+|+=|++|+..+|| .|.++.++.+....... ..+-.-...++ T Consensus 24 G~~v~~d~~tg~~~~~n~~~~~~~y~PGStfK~~t~~aaLe---~g~~~~~~~~~~~~~~~-----~~~~~~~g~~~--- 92 (246) T 2iwb_A 24 GSFVLYNEREQAYSIYNEPESKQRYSPNSTYKIYLALMAFD---QNLLSLNHTEQQWDKHQ-----YPFKEWNQDQN--- 92 (246) T ss_dssp EEEEEEETTTTEEEEESHHHHTBCBCCGGGGHHHHHHHHHH---TTSSBTTBCCBCCCCCC-----CSSGGGSSCBC--- T ss_pred EEEEEEECCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCCCCC-----CCCCCCCCCCC--- T ss_conf 46999978999676058889668779963699999999998---49978854341699866-----17898899707--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 457889987777765455420100578999888768872661222002454-3333445301345555542013620467 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-l~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) +.-.+..|.|...+-|++.++- +.+.+.++++|+.+....++.. +....-..|+.+|+.+...+...-..+. T Consensus 93 -l~~Al~~S~N~~~~~la~~lG~------~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~iTPlqma~~~~~ian~g~~~~ 165 (246) T 2iwb_A 93 -LNSSMKYSVNWYYENLNKHLRQ------DEVKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMHFD 165 (246) T ss_dssp -HHHHHHTTCHHHHHHHHTTSCH------HHHHHHHHHHTCTTCCCCSCSSTTSSSSCCBCHHHHHHHHHHHHTTCSSSC T ss_pred -HHHHHHCCCHHHHHHHHHHCCC------CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf -7884224562999999987286------078999998289999889876422268752569999999999983896788 Q ss_pred E-EEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCC--EEEEEEEECCEEEEEEEE Q ss_conf 7-6115654347869972101025768700565224233371--799999978979999981 Q gi|254780698|r 210 K-YFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF--NIVTSLRYKDDPIVAVVM 268 (336) Q Consensus 210 ~-~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~--clv~~a~~~g~~lI~Vvl 268 (336) . .... ..+....... ..+....+.|||.+..... -||+.+..++.+++.+|+ T Consensus 166 p~~~~~---~~~~~~~~~~----~~~~~~~ktgTg~~~~~~~~aWFvGf~p~~~p~~~~~v~ 220 (246) T 2iwb_A 166 NKAIEK---VENSMTLKQK----DTYKYVGKTGTGIVNHKEANGWFVGYVETKDNTYYFATH 220 (246) T ss_dssp HHHHHH---HHHHTEEEEC----SSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE T ss_pred CHHHHH---HHHHHHHHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 325567---7777777654----234432110104468988788999999889995999999 No 40 >1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A* Probab=98.82 E-value=1e-07 Score=63.63 Aligned_cols=187 Identities=17% Similarity=0.092 Sum_probs=111.9 Q ss_pred CCCEEEEECCCCEEEEE---CC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCEE Q ss_conf 63199999889628311---36-99888-8138799999999997555898855411153676124544322578-8568 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF---KQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE-KTYF 126 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~---Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~-g~~~ 126 (336) .-+.+++|..||++++- .| ..++| |+|+=|++|++.+||+ |.+..++.+.... +....... ...+ T Consensus 20 ~G~~vv~D~~tg~~~a~~~n~~~a~~~y~PGSTfK~~~~~aaLe~---G~i~~~~~~~~~~------~~~~~~~~~~g~~ 90 (254) T 1k38_A 20 KGTIVVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDA---GAVRDEFQIFRWD------GVNRGFAGHNQDQ 90 (254) T ss_dssp CEEEEEEECSSSSCCCEEESHHHHTCCBCCGGGGHHHHHHHHHHH---TSCCSTTCCBCCC------SCCCSCTTTSSCB T ss_pred CEEEEEEECCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCC------CCCCCCCCCCCCC T ss_conf 389999989998578861498996688899728999999999984---9854321134689------8767888889997 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC--CCCCCCCCHHHHHHHHHHHCCC Q ss_conf 83024578899877777654554201005789998887688726612220024543--3334453013455555420136 Q gi|254780698|r 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 127 tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl--~~~~~~tta~Dla~l~~~~~~~ 204 (336) -+.-.+..|.|-..+-|++.++. +.|.+.++++|+.+.......+. ....-..|+..|+.+...+... T Consensus 91 ----tl~~Al~~S~N~~f~~la~~lG~------~~~~~~~~~~G~G~~~~~~~~~~~~~~g~~~itPlq~a~~~~~ian~ 160 (254) T 1k38_A 91 ----DLRSAMRNSTVWVYELFAKEIGD------DKARRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRN 160 (254) T ss_dssp ----CHHHHHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCCC--CCTTTTSSCCBCHHHHHHHHHHHHTT T ss_pred ----CHHHHHHHCCHHHHHHHHHHHCH------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf ----99999997393999999998190------88999999859999988765344001787437599999999999769 Q ss_pred CEEEEEEEEEEEEEECC-EEEEEECHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEEEEEE Q ss_conf 20467761156543478-69972101025768700565224233371799999978979999981 Q gi|254780698|r 205 FPQYYKYFSIRKFRYRN-RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268 (336) Q Consensus 205 ~p~~~~~~s~~~~~~~~-~~~~n~N~lL~~~~g~~G~KTG~T~~AG~clv~~a~~~g~~lI~Vvl 268 (336) -..+...... ..+. .... ....+..+.|||++...|+ ||+.+..++.++..+|+ T Consensus 161 g~~~~~~~~~---~~~~~~~~~------~~~g~~vaGKTGTa~~~~W-FvG~~p~~~p~~~~av~ 215 (254) T 1k38_A 161 ELPFRVEHQR---LVKDLMIVE------AGRNWILRAKTGWEGRMGW-WVGWVEWPTGSVFFALN 215 (254) T ss_dssp CSSSCHHHHH---HHHHHTEEE------EETTEEEEEEEEESSSEEE-EEEEEEETTEEEEEEEE T ss_pred CEECCHHHHH---HHHHHHHHH------HHCCCEEEEEECCCCCCEE-EEEEEECCCCEEEEEEE T ss_conf 9405800679---999999883------4259757776368986768-99999869986999999 No 41 >1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ... Probab=98.73 E-value=1.7e-07 Score=62.28 Aligned_cols=185 Identities=15% Similarity=0.012 Sum_probs=108.8 Q ss_pred CCEEEEECCCCEEEEE-CC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC-CCCCCEEEEE Q ss_conf 3199999889628311-36-99888-8138799999999997555898855411153676124544322-5788568830 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF-KQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY-LKEKTYFTTE 129 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~-Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~-l~~g~~~tv~ 129 (336) -+++++|.+||+++.- -| +.+++ |+|+-|++|++.+|| +|.+..++.+.... +.... -.....++ T Consensus 19 G~~v~~d~~tg~~~~~~~~ra~~~~~PGStfKp~~~~aaLe---~G~i~~~~~~~~~~------g~~~~~~~~~g~~t-- 87 (246) T 1k55_A 19 GVFVLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLE---TGVIKNEHQVFKWD------GKPRAMKQWERDLT-- 87 (246) T ss_dssp EEEEEEESSTTSEEESCHHHHTCCBCCGGGGHHHHHHHHHH---TTSSCSTTCEECCC------SCCCSSGGGSSCEE-- T ss_pred EEEEEEECCCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCC------CCCCCCCCCCCCCC-- T ss_conf 58999989999688637667626879974389999999998---08999744553689------95667677799979-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC--CCCCCCCCHHHHHHHHHHHCCCCEE Q ss_conf 24578899877777654554201005789998887688726612220024543--3334453013455555420136204 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--HDKNQITTARDQAILGILLRKNFPQ 207 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl--~~~~~~tta~Dla~l~~~~~~~~p~ 207 (336) +...+..|.|.+.+-|++.++- +.+.+.++++|+.+......... ...+...|+..|+.....+...-.. T Consensus 88 --l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~g~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~iangg~~ 159 (246) T 1k55_A 88 --LRGAIQVSAVPVFQQIAREVGE------VRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLS 159 (246) T ss_dssp --HHHHHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCCSCTTTTTTTSSCCBCHHHHHHHHHHHHTTCSS T ss_pred --HHHHHHHCCCHHHHHHHHHCCH------HHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf --9999997482999999998398------99999999839998878887653444698655699999999999729987 Q ss_pred EEEEEEEEEEEECCEEEEEECHHC---CCCCCCEEEEECCCCCC-----CC-EEEEEEEECCEEEEEEEE Q ss_conf 677611565434786997210102---57687005652242333-----71-799999978979999981 Q gi|254780698|r 208 YYKYFSIRKFRYRNRIITNHNKLL---NKMHNIDGIKTGYTRNS-----GF-NIVTSLRYKDDPIVAVVM 268 (336) Q Consensus 208 ~~~~~s~~~~~~~~~~~~n~N~lL---~~~~g~~G~KTG~T~~A-----G~-clv~~a~~~g~~lI~Vvl 268 (336) +... +. .-...++ .......+.|||+.... .+ -||+.+..++.+++.+|+ T Consensus 160 ~sp~------~~-----~~~~~~m~~~~~~g~~vagKTGTa~~g~~~~~~~aWFvGf~p~~~p~~~~av~ 218 (246) T 1k55_A 160 ASKE------NQ-----LIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFN 218 (246) T ss_dssp SCHH------HH-----HHHHHHTEEEEETTEEEEEEEEECCCCCSSSCEEEEEEEEEEETTEEEEEEEE T ss_pred CCHH------HH-----HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 7889------99-----99999999877664221444512220578998538999999879985999999 No 42 >1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A* Probab=98.73 E-value=2.8e-07 Score=61.06 Aligned_cols=186 Identities=13% Similarity=0.027 Sum_probs=113.2 Q ss_pred CCEEEEECCCCEEE-EECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH Q ss_conf 31999998896283-1136-99888-813879999999999755589885541115367612454432257885688302 Q gi|254780698|r 54 YSSIVIDVNKNQMT-GFKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 54 ~sAiv~D~~tG~IL-y~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336) -+.+++|.++|+++ |..| ..+++ |+|+=|+.|+..+||. |.+..++.+............ ..| .. T Consensus 31 G~~v~~d~~~g~~~~~n~~~~~~~y~PGStfK~~~~~aaLe~---G~i~~~~~~~~~~~~~~~~~~----~~g-----~~ 98 (255) T 1xkz_A 31 GSFVMYSMKKDKYYIYNEKESRKRYSPNSTYKIYLAMFGLDR---HIINDENSRMSWNHKHYPFDA----WNK-----EQ 98 (255) T ss_dssp EEEEEEETTTTEEEEESHHHHTSEECCGGGGHHHHHHHHHHT---TSSCSSCCCBCCCCCCCSSGG----GSS-----CB T ss_pred EEEEEEECCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHHC---CCCCCCCCEECCCCCCCCCCC----CCC-----CC T ss_conf 269999899997652188996587899548999999999986---998887512259988705787----789-----98 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-CCCCCCCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 457889987777765455420100578999888768872661222002454-3333445301345555542013620467 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-LHDKNQITTARDQAILGILLRKNFPQYY 209 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-l~~~~~~tta~Dla~l~~~~~~~~p~~~ 209 (336) -|...+..|.|-..+-|+..++. +.|.+.++++|..+.....+.+ +-......|+..++.+...+...-..+. T Consensus 99 ~l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~vTPlq~a~~~~~ian~g~~~s 172 (255) T 1xkz_A 99 DLNTAMQNSVNWYFERISDQIPK------NYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHFS 172 (255) T ss_dssp CHHHHHHTTCHHHHHHHHTTSCH------HHHHHHHHHHTCTTCCCTTSSSTTTTSSCCEEHHHHHHHHHHHHHCC-CSC T ss_pred CHHHHHHHCCCHHHHHHHHHHCC------HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99999997674999998876172------268999998088988745575444379753549999999999970996668 Q ss_pred EEEEEEEEEECCEEEEEECHHC---CCCCCCEEEEECCCCCCCC----EEEEEEEECCEEEEEEEE Q ss_conf 7611565434786997210102---5768700565224233371----799999978979999981 Q gi|254780698|r 210 KYFSIRKFRYRNRIITNHNKLL---NKMHNIDGIKTGYTRNSGF----NIVTSLRYKDDPIVAVVM 268 (336) Q Consensus 210 ~~~s~~~~~~~~~~~~n~N~lL---~~~~g~~G~KTG~T~~AG~----clv~~a~~~g~~lI~Vvl 268 (336) .. +. ..-..++ ....+-.+.|||+....+. -||+.+..++.+++.+|+ T Consensus 173 ~~------~~-----~~~~~~m~~~~~~G~~vagKTGTa~~~~~~~~~WFvGy~p~~~p~~~vav~ 227 (255) T 1xkz_A 173 KK------AK-----NQLSSSLLIKKNEKYELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATH 227 (255) T ss_dssp HH------HH-----HHHHHHHEEEECSSEEEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEE T ss_pred HH------HH-----HHHHHHHHHHHHCCCHHHCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 88------99-----999999998875585000201221418996518999999879985999999 No 43 >3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Probab=98.71 E-value=2e-07 Score=61.96 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=88.4 Q ss_pred CCCCCCEEEEECCCCEEEEECC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CHHHHCCCC-----CC Q ss_conf 4876319999988962831136-99888-813879999999999755589885541115-----367612454-----43 Q gi|254780698|r 50 AKPKYSSIVIDVNKNQMTGFKQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV-----SKTAATQNP-----SK 117 (336) Q Consensus 50 ~~~~~sAiv~D~~tG~ILy~Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~i-----s~~a~~~~~-----s~ 117 (336) ..|..++.|+ .. +.|+++.- .+..+ .||+||.+|+.+++..+++|+|++|+++.- .+-.....| .. T Consensus 11 ~~p~~~~~v~-~~-~~~~~~~gd~dt~f~iaS~tK~~ta~~i~~lve~G~l~Ld~pv~~~~iTlr~LLthtsGl~~~~~~ 88 (280) T 3i7j_A 11 PVPAAAAAVI-GP-AGVLATHGDTARVFALASVTKPLVARAAQVAVEEGVVNLDTPAGPPGSTVRHLLAHTSGLAMHSDQ 88 (280) T ss_dssp SSSCEEEEEE-ET-TEEEEEESCTTSCEECGGGHHHHHHHHHHHHHHHTSSCTTSBCSSTTCBHHHHHTTCSCBCSSSSC T ss_pred CCCCCCEEEE-CC-CCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC T ss_conf 9986644898-39-978811389988898760599999999999998699889997887898799995486888756676 Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHCCCCCCEECCCCCCCCCCCCCHHHHHH Q ss_conf 22578856883024578899877777654554201005789998887-68872661222002454333344530134555 Q gi|254780698|r 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN-KAKKIGMQNTIYKNASGLHDKNQITTARDQAI 196 (336) Q Consensus 118 ~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~-~A~~lGl~~t~f~np~Gl~~~~~~tta~Dla~ 196 (336) ...++|+.+.--..-+.++ + .+.|.+.| ..|.+.|++ -..-|||++|.|.........+-.+|+.|+++ T Consensus 89 ~~~~PGt~~~Ysn~~~~lL-------g-~ile~vtG--~~~~~~~~e~I~~PLGm~~t~~~~~p~~~~~G~~st~~D~~~ 158 (280) T 3i7j_A 89 ALARPGTRRMYSNYGFTVL-------A-ESVQRESG--IEFGRYLTEAVCEPLGMVTTRLDGGPAAAGFGATSTVADLAV 158 (280) T ss_dssp BCSCTTTCCCCCHHHHHHH-------H-HHHHHHHT--SCHHHHHHHHTHHHHTCTTCEECSGGGGTTTCEEECHHHHHH T ss_pred CCCCCCCEEEECCHHHHHH-------H-HHHHHHCC--CCHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCCCCHHHHHH T ss_conf 2149896457775769999-------9-98874338--627889999999752897624158833146774332779999 Q ss_pred HHHHHCC Q ss_conf 5542013 Q gi|254780698|r 197 LGILLRK 203 (336) Q Consensus 197 l~~~~~~ 203 (336) ....++. T Consensus 159 ~~~~ll~ 165 (280) T 3i7j_A 159 FAGDLLR 165 (280) T ss_dssp HHHHHHS T ss_pred HHHHHHC T ss_conf 9999848 No 44 >3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* Probab=98.65 E-value=6.2e-07 Score=58.99 Aligned_cols=187 Identities=16% Similarity=0.031 Sum_probs=107.0 Q ss_pred CCEEEEECCCCEEEEE-CC-CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEH Q ss_conf 3199999889628311-36-99888-813879999999999755589885541115367612454432257885688302 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF-KQ-DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQ 130 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~-Kn-~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~d 130 (336) -+.+++|..+|+++.. -| +.+++ |+|+-|+.|++.+|| +|.++.++.+......+... -..| .+ T Consensus 22 G~~v~~d~~~~~~~~~~~~ra~~~~~PGSTfK~~~~~aaLe---~G~~~~~~~~~~~g~~~~~~-----~~~g-~~---- 88 (244) T 3g4p_A 22 GVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLE---NHKATTNEIFKWDGKKRTYP-----MWEK-DM---- 88 (244) T ss_dssp EEEEEEETTEEEEEESCGGGGGCCBCCGGGHHHHHHHHHHH---TTSCCSSCCBCCCSCCCSSG-----GGSS-CB---- T ss_pred EEEEEEECCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCC-----CCCC-CC---- T ss_conf 38999978988664354001137879964799999999998---69999742234789650578-----8788-86---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC--CCCCCCCCCHHHHHHHHHHHCCCCEEE Q ss_conf 457889987777765455420100578999888768872661222002454--333344530134555554201362046 Q gi|254780698|r 131 GILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG--LHDKNQITTARDQAILGILLRKNFPQY 208 (336) Q Consensus 131 Ll~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G--l~~~~~~tta~Dla~l~~~~~~~~p~~ 208 (336) -++..+..|.|.+.+-++..++. +.+.+.++++|+.+...-.... ........|+.+|+.....+..+-..+ T Consensus 89 ~l~~Al~~S~N~~~~~l~~~lG~------~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~iTp~q~a~~~~~lan~g~~~ 162 (244) T 3g4p_A 89 TLGEAMALSAVPVYQELARRTGL------ELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRLPF 162 (244) T ss_dssp CHHHHHHTTCHHHHHHHHHHHCH------HHHHHHHHHHTCTTCCCTTCTTTHHHHSSCCBCHHHHHHHHHHHHTTCSSS T ss_pred CHHHHHHHCCHHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCC T ss_conf 99999996385999999987083------878999997899998898655561107870186999999999997098055 Q ss_pred EEEEEEEEEEE-CCEEEEEECHHCCCCCCCEEEEECCCCCCCC---EEEEEEEE-CCEEEEEEEE Q ss_conf 77611565434-7869972101025768700565224233371---79999997-8979999981 Q gi|254780698|r 209 YKYFSIRKFRY-RNRIITNHNKLLNKMHNIDGIKTGYTRNSGF---NIVTSLRY-KDDPIVAVVM 268 (336) Q Consensus 209 ~~~~s~~~~~~-~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~---clv~~a~~-~g~~lI~Vvl 268 (336) ..... ... +..... ....+..+.|||+....+. -|++.+.. |++.++.||+ T Consensus 163 ~~~~~---~~v~~~m~~~------~~~g~~~aGKTGT~~~~~~~~~WFvG~~~~~~~~~~~~~v~ 218 (244) T 3g4p_A 163 KLETQ---EEVKKMLLIK------EVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLN 218 (244) T ss_dssp CHHHH---HHHHHTTEEE------EETTEEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEE T ss_pred CHHHH---HHHHHHHHHH------HHHCEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEE T ss_conf 85589---9999999975------54322237858711268998789999768698988999999 No 45 >2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A Probab=98.56 E-value=2e-05 Score=49.92 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=86.1 Q ss_pred CCCEEEEECCCCEEEEEC---------------C-C-C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC Q ss_conf 631999998896283113---------------6-9-9-88881387999999999975558988554111536761245 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFK---------------Q-D-E-PRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN 114 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~K---------------n-~-~-~~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~ 114 (336) ..+++|+|.+||+||.-- | + . .+.|.|+-|.+|++.+|| +|.+++++.+........ + T Consensus 342 ~~~~vv~dp~tG~IlAm~~~~~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~~aALe---~g~~~~~~~~~d~~~~~~-~ 417 (680) T 2wad_A 342 GVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWE---NGVLSGNQTLTDQPIVFQ-G 417 (680) T ss_dssp EEEEEEECTTTCBEEEEEEEEECTTTCCEEECTTHHHHCCBCCGGGGHHHHHHHHHH---TTSCCSSCCEEECCBCBT-T T ss_pred CEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCCCEEECCCCCCC-C T ss_conf 669999966658044136763122100134544201111357875216788999997---089998735713784223-6 Q ss_pred CCC--CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHCCCCCCEECC- Q ss_conf 443--2257885688302457889987777765455420100------------5789998887688726612220024- Q gi|254780698|r 115 PSK--LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGS------------EKKFAILMSNKAKKIGMQNTIYKNA- 179 (336) Q Consensus 115 ~s~--~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs------------~~~Fv~~MN~~A~~lGl~~t~f~np- 179 (336) +.. .+-..|. ..-.--+...+..|.|-.++-+|+.+.|. .+.-.+.+.+.++.+|+....-... T Consensus 418 ~~~~~~~~~~~~-~~g~itl~~Al~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~lp 496 (680) T 2wad_A 418 SAPIYSWYKLAY-GSFPITAVEALEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDLP 496 (680) T ss_dssp SCCBCCTTTTTT-CSEEECHHHHHHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCSSS T ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 886421013677-8877205636450755999999987502445403330426787654688999997099865688665 Q ss_pred ---CCCCC--------------CCCCCCHHHHHHHHHHHC Q ss_conf ---54333--------------344530134555554201 Q gi|254780698|r 180 ---SGLHD--------------KNQITTARDQAILGILLR 202 (336) Q Consensus 180 ---~Gl~~--------------~~~~tta~Dla~l~~~~~ 202 (336) .|+-. .+...|+-.||.....+. T Consensus 497 ~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~ia 536 (680) T 2wad_A 497 DESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIA 536 (680) T ss_dssp CCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 4456767752333322322357767789999999999997 No 46 >3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A* Probab=98.56 E-value=8e-07 Score=58.31 Aligned_cols=189 Identities=12% Similarity=-0.018 Sum_probs=107.5 Q ss_pred CCEEEEECCCCEEEEECC---CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEE Q ss_conf 319999988962831136---99888-81387999999999975558988554111536761245443225788568830 Q gi|254780698|r 54 YSSIVIDVNKNQMTGFKQ---DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTE 129 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~Kn---~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~ 129 (336) -+.+++|.++|+++..-| ...++ |+|+=|++|++.+|| .|.++.++.+......... ..+ .+ .+ T Consensus 17 g~~v~~d~~~~~~~~~~n~~~~~~~y~PGSTfK~~~~~aaLe---~g~i~~~~~~~~~~~~~~~---~~~--~~-~~--- 84 (251) T 3isg_A 17 GCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFD---AEIIDQKTIFKWDKTPKGM---EIW--NS-NH--- 84 (251) T ss_dssp EEEEEEETTTCCEEEEECHHHHTCCBCCGGGHHHHHHHHHHH---TTSCCTTCCBCCCSSCCSS---GGG--SS-CB--- T ss_pred CEEEEEECCCCCEECCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCCEEEECCCCCCC---CCC--CC-CC--- T ss_conf 249999789898500308677467779953599999999998---5998899557732656676---677--99-82--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC--------CCCCCCCCHHHHHHHHHHH Q ss_conf 24578899877777654554201005789998887688726612220024543--------3334453013455555420 Q gi|254780698|r 130 QGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGL--------HDKNQITTARDQAILGILL 201 (336) Q Consensus 130 dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl--------~~~~~~tta~Dla~l~~~~ 201 (336) -|+-.+..|.|-...-|+..++. +.|.+.++++|+.+.......+. ...+...|+..++.+...+ T Consensus 85 -tl~~Al~~S~N~~~~~la~~lG~------~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~i 157 (251) T 3isg_A 85 -TPKTWMQFSVVWVSQEITQKIGL------NKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKI 157 (251) T ss_dssp -CHHHHHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTCTTCCCCCC--CCCHHHHTTSSSSCCBCHHHHHHHHHHH T ss_pred -CHHHHHHHCCHHHHHHHHHHCCC------CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHHHHHH T ss_conf -98999987157999999876383------13789999769999888886422235566311476014599999999999 Q ss_pred CCCCEEEEEEEEEEEEEECCEEEEEECHHCCCCCCCEEEEECCCCCCCC-----EEEEEEEE-CCEEEEEEEE Q ss_conf 1362046776115654347869972101025768700565224233371-----79999997-8979999981 Q gi|254780698|r 202 RKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGF-----NIVTSLRY-KDDPIVAVVM 268 (336) Q Consensus 202 ~~~~p~~~~~~s~~~~~~~~~~~~n~N~lL~~~~g~~G~KTG~T~~AG~-----clv~~a~~-~g~~lI~Vvl 268 (336) ...-..+...... ...+....... ...+..++|||++...+. -||+.+.. +++.++.|++ T Consensus 158 an~~~~~~~~~~~--~i~~~m~~~~~-----~~g~~vaGKTGTa~~~~~~~~~~WFvGy~p~~~~~~~~~~v~ 223 (251) T 3isg_A 158 INHNLPVKNSAIE--NTIENMYLQDL-----DNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSA 223 (251) T ss_dssp HTTCSSSCHHHHH--HHHHHTEEEEC-----TTSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEE T ss_pred HCCCCCCCHHHHH--HHHHHHHHHEE-----CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEE T ss_conf 8399313858999--99999756233-----266421366377547899985399999987489988999999 No 47 >2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ... Probab=98.52 E-value=4.3e-06 Score=53.99 Aligned_cols=141 Identities=13% Similarity=0.005 Sum_probs=78.2 Q ss_pred CCCEEEEEC------------CCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH---------------HHCC Q ss_conf 896283113------------6998888-13879999999999755589885541115367---------------6124 Q gi|254780698|r 62 NKNQMTGFK------------QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT---------------AATQ 113 (336) Q Consensus 62 ~tG~ILy~K------------n~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~---------------a~~~ 113 (336) ..|+++|.. +++-+++ ||+||.+|+.+++..+++|++++|+++.---. .... T Consensus 31 ~~g~~~~~~~G~~~~~~~~~~t~~T~f~iaS~tK~~ta~~i~~lve~G~l~ld~pv~~ylp~~~~~~~~~ITlr~LLsHt 110 (358) T 2ffy_A 31 YQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYT 110 (358) T ss_dssp ETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHHHHCTTCCSGGGTTCBHHHHHHTC T ss_pred ECCEEEEEEEEECCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCC T ss_conf 99999998386403666988999997963226899999999999976999987864554854333433323298873678 Q ss_pred CCCCCCCCCCCEEEEEHHHHHHHHHH-----------HHHHHHHH---HHHHCCHHHHHHHHHHH-HHHHHCCCCCCEEC Q ss_conf 54432257885688302457889987-----------77776545---54201005789998887-68872661222002 Q gi|254780698|r 114 NPSKLYLKEKTYFTTEQGILALITRS-----------ANDVSTAF---GEFISGSEKKFAILMSN-KAKKIGMQNTIYKN 178 (336) Q Consensus 114 ~~s~~~l~~g~~~tv~dLl~~lli~S-----------~NdAa~al---Ae~i~Gs~~~Fv~~MN~-~A~~lGl~~t~f~n 178 (336) .|-..........+.++++..+.-.. .|-.-..| .|.+.| ..|.+.+.+ -.+-|||++|.|.- T Consensus 111 SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~lLg~iie~vtg--~~~~~~~~e~i~~PLgm~~t~~~~ 188 (358) T 2ffy_A 111 AGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSG--LSFEQAMQTRVFQPLKLNHTWINV 188 (358) T ss_dssp SSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHTGGGT--SCHHHHHHHHTTTTTTCTTCBSSC T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 799855565310006999998850887679993467550278898877763248--967776899863546986567679 Q ss_pred CCCC-----------------------CCCCCCCCHHHHHHHHHHHCCC Q ss_conf 4543-----------------------3334453013455555420136 Q gi|254780698|r 179 ASGL-----------------------HDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 179 p~Gl-----------------------~~~~~~tta~Dla~l~~~~~~~ 204 (336) +... +..+-++|+.||++.++..+.. T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~D~ak~~~~~l~~ 237 (358) T 2ffy_A 189 PPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKP 237 (358) T ss_dssp CGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCG T ss_pred CHHHHCCEEEEEECCCCEECCCCCCCCCCCCEECCHHHHHHHHHHHHCC T ss_conf 8355056244321697031146534567774115899999999998489 No 48 >1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A* Probab=98.47 E-value=3.8e-06 Score=54.26 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=98.5 Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH----------------- Q ss_conf 998888-13879999999999755589885541115367612454432257885688302457----------------- Q gi|254780698|r 72 DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL----------------- 133 (336) Q Consensus 72 ~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~----------------- 133 (336) ++-+++ ||+||.+|+.+++..+++|++++|++|. ++--. +...+.+|+++||. T Consensus 54 ~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~--~ylp~-------~~~~~~iTi~~LL~HtSGl~~~~~~~~~~~~ 124 (349) T 1yqs_A 54 TTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVN--TYLPG-------LLPDDRITVRQVMSHRSGLYDYTNDMFAQTV 124 (349) T ss_dssp TTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHSTT-------CSSCTTCBHHHHHTTCSCCCCTHHHHTSSHH T ss_pred CCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCC-------CCCCCCCCHHHHHHCCCCCCCCCCCCHHHHC T ss_conf 99979630479999999999999879999888210--02887-------6888866599982164789876553102204 Q ss_pred ------------------HHHHH----------H-HHHHHHH---HHHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC Q ss_conf ------------------88998----------7-7777654---5542010057899988876-887266122200245 Q gi|254780698|r 134 ------------------ALITR----------S-ANDVSTA---FGEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS 180 (336) Q Consensus 134 ------------------~lli~----------S-~NdAa~a---lAe~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~ 180 (336) ...-. + .|-.... +.|.+.| ..|.+.+.++ .+-|||++|.|..+. T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtG--~~~~~~~~e~i~~PLGm~~t~~~~~~ 202 (349) T 1yqs_A 125 PGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG--HSVATEYQNRIFTPLNLTDTFYVHPD 202 (349) T ss_dssp HHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTTTTCTTCBCCTTC T ss_pred CCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 4300002344788999999875044579995677643352310221321049--97899999986643299877888960 Q ss_pred ---------CC----------------------CCCCCCCCHHHHHHHHHHHCCCCEEEEE------EEEEEEEEECCEE Q ss_conf ---------43----------------------3334453013455555420136204677------6115654347869 Q gi|254780698|r 181 ---------GL----------------------HDKNQITTARDQAILGILLRKNFPQYYK------YFSIRKFRYRNRI 223 (336) Q Consensus 181 ---------Gl----------------------~~~~~~tta~Dla~l~~~~~~~~p~~~~------~~s~~~~~~~~~~ 223 (336) |. ...+-++|+.||++..++++... +.. ... ......... T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dl~~~~~~l~~g~--~l~~~~~~~~~~-~~~~~~~~~ 279 (349) T 1yqs_A 203 TVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQ--LMSAAQLAQMQQ-WTTVNSTQG 279 (349) T ss_dssp CCCCSSBCCCEECCSSTTCCCEECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTTC--SSCHHHHHHHTC-CEEEETTEE T ss_pred HHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCHHHHHHHHC-CCCCCCCCC T ss_conf 21232121242235567872313533465434667641068999999999986699--899999999746-605899986 Q ss_pred ----EEEECHHCCCCCCCE-EEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf ----972101025768700-56522423337179999997897999998179987899999999999984 Q gi|254780698|r 224 ----ITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288 (336) Q Consensus 224 ----~~n~N~lL~~~~g~~-G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f 288 (336) |...+ ...+.. =..+|.+ .|++-......+....|+|+.+..+...-...+.+.+...| T Consensus 280 yGlG~~~~~----~~~g~~~~~H~G~~--~G~~s~~~~~p~~~~~vv~l~N~~~~~~~~~~i~~~l~~~~ 343 (349) T 1yqs_A 280 YGLGLRRRD----LSCGISVYGHTGTV--QGYYTYAFASKDGKRSVTALANTSNNVNVLNTMARTLESAF 343 (349) T ss_dssp ECSSCEEEE----CTTSCEEEEEEEEE--TTEEEEEEECTTSSEEEEEEESEESCHHHHHHHHHHHHHHH T ss_pred EEEEEEEEC----CCCCCEEEEECCCC--CCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 378998740----58996699826747--87239999997799899999979998679999999999996 No 49 >1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes} Probab=98.41 E-value=4.8e-06 Score=53.67 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=82.6 Q ss_pred CCCCCEEEEECCCCEEEEEC------------CCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 87631999998896283113------------6998888-1387999999999975558988554111536761245443 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFK------------QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~K------------n~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~ 117 (336) .|..+..|+ ..|+++|+. +++-+++ ||+||.+|+.+++..+++|++++|+++..--...... T Consensus 26 ipG~sv~v~--~~g~~~~~~~G~~d~~~~~~~t~~t~f~iaSiSK~~ta~~i~~lve~G~l~ldd~v~~ylP~~~~~--- 100 (359) T 1zkj_A 26 IPGMAVAVL--KDGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASRHAPWLKGS--- 100 (359) T ss_dssp CSEEEEEEE--ETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGGCGGGTTS--- T ss_pred CCEEEEEEE--ECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--- T ss_conf 985999999--999999985620215669989999989632379999999999999769977433222347765444--- Q ss_pred CCCCCCCEEEEEHHHH---------------------HHHHH-----------H-HHHHHHHHH---HHHCCHHHHHHHH Q ss_conf 2257885688302457---------------------88998-----------7-777765455---4201005789998 Q gi|254780698|r 118 LYLKEKTYFTTEQGIL---------------------ALITR-----------S-ANDVSTAFG---EFISGSEKKFAIL 161 (336) Q Consensus 118 ~~l~~g~~~tv~dLl~---------------------~lli~-----------S-~NdAa~alA---e~i~Gs~~~Fv~~ 161 (336) ..+.+|+++||. ..+.. . .|-.-..|+ |.+.| +.|.+. T Consensus 101 ----~~~~ITi~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~lLg~iie~~tg--~~~~~~ 174 (359) T 1zkj_A 101 ----AFDSITMGELATYSAGGLPLQFPEEVDSSEKMRAYYRQWAPVYSPGSHRQYSNPSIGLFGHLAASSLK--QPFAPL 174 (359) T ss_dssp ----GGGSSBHHHHHTTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHHTT--SCHHHH T ss_pred ----CCCCEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCC--CCHHHH T ss_conf ----45652056554232499865676556768999999963887679894333066588999999998609--988999 Q ss_pred HHH-HHHHHCCCCCCEECCCCCC------------------------CCCCCCCHHHHHHHHHHHCC Q ss_conf 887-6887266122200245433------------------------33445301345555542013 Q gi|254780698|r 162 MSN-KAKKIGMQNTIYKNASGLH------------------------DKNQITTARDQAILGILLRK 203 (336) Q Consensus 162 MN~-~A~~lGl~~t~f~np~Gl~------------------------~~~~~tta~Dla~l~~~~~~ 203 (336) +++ -.+-|||.+|.|..+.-.. ..+..+|+.|+++..+..+. T Consensus 175 l~~~i~~Plgm~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~ 241 (359) T 1zkj_A 175 MEQTLLPGLGMHHTYVNVPKQAMASYAYGYSKEDKPIRVNPGMLADEAYGIKTSSADLLRFVKANIG 241 (359) T ss_dssp HHHTHHHHTTCSSCBSSCCGGGGGGBCCEECTTCCEECCCCCTTHHHHHCCEECHHHHHHHHHHTTT T ss_pred HHHHHHCCCCCCCCCCCCCHHHCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 9999754259967576898366055010223679714526876677777601789999999999736 No 50 >1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A* Probab=98.36 E-value=5.7e-06 Score=53.21 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=40.0 Q ss_pred CCCCCEEEEECCCCEEEEEC-------------CCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 87631999998896283113-------------6998888-1387999999999975558988554111 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFK-------------QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIP 105 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~K-------------n~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~ 105 (336) .|..+..|+ ..|+|+|++ +++-+++ ||+||.+|+.+++..+++|++++|+++. T Consensus 35 ~pG~~v~V~--~~G~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvtK~~ta~~i~~Lve~G~l~ldd~v~ 101 (392) T 1ci9_A 35 LVGAVAIVA--RHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELALDAPVT 101 (392) T ss_dssp CSEEEEEEE--ETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSSCTTSBGG T ss_pred CCEEEEEEE--ECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 864999999--9999999984765144559989999879713179999999999999779866777411 No 51 >2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi} Probab=98.32 E-value=8.2e-07 Score=58.24 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=80.5 Q ss_pred CCCCCEEEEECCCCEEEEECC-------------CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 876319999988962831136-------------998888-138799999999997555898855411153676124544 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFKQ-------------DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~Kn-------------~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336) .|..|..| ...|+++|++. ++-.++ ||+||.+|+++++..+++|++++|++|.- +--.. T Consensus 19 vPG~sv~V--~~~g~~v~~~~~G~ad~~~~~p~~~dT~f~i~SvSK~fTa~~i~~Lve~G~l~lddpv~~--ylP~~--- 91 (447) T 2qmi_A 19 VPGISISI--IKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEK--FVNIK--- 91 (447) T ss_dssp CCEEEEEE--EETTEEEEEEEEEEEETTTTEECCSSCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--TSSSC--- T ss_pred CCEEEEEE--EECCEEEEEEEEEEECCCCCCCCCCCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCC--- T ss_conf 98799999--999999999857750467799899999796700899999999999998699998780889--68522--- Q ss_pred CCCCCCCCEEEEEHHHHH---H-----------------------------HHH---------------H-HHHHHHHH- Q ss_conf 322578856883024578---8-----------------------------998---------------7-77776545- Q gi|254780698|r 117 KLYLKEKTYFTTEQGILA---L-----------------------------ITR---------------S-ANDVSTAF- 147 (336) Q Consensus 117 ~~~l~~g~~~tv~dLl~~---l-----------------------------li~---------------S-~NdAa~al- 147 (336) ....++.+|+++||.- + ... + .|..-..| T Consensus 92 --~~~~~~~iTi~~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGt~~~Ysn~~y~lLg 169 (447) T 2qmi_A 92 --LRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLG 169 (447) T ss_dssp --CCGGGCCCBHHHHHTTCSSCCBCSHHHHHHHHHTTCSCCCCCCSHHHHHHHGGGGGGGCCSCTTSCCCCCHHHHHHHH T ss_pred --CCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHH T ss_conf --378889858999701767998766521223101022223555672678999997542235688861123455799999 Q ss_pred --HHHHCCHHHHHHHHHHH-HHHHHCCCCCCEECCCCC---------------------------CCCCCCCCHHHHHHH Q ss_conf --54201005789998887-688726612220024543---------------------------333445301345555 Q gi|254780698|r 148 --GEFISGSEKKFAILMSN-KAKKIGMQNTIYKNASGL---------------------------HDKNQITTARDQAIL 197 (336) Q Consensus 148 --Ae~i~Gs~~~Fv~~MN~-~A~~lGl~~t~f~np~Gl---------------------------~~~~~~tta~Dla~l 197 (336) .|.+.| ..|.+.+.+ -.+-|||++|.|..+... ...+-++|+.||++. T Consensus 170 ~iie~vtg--~~~~~~~~~~I~~PLgm~~T~~~~~~~~~~~~~a~gy~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~ 247 (447) T 2qmi_A 170 KIIEKVSG--VSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLVPQPFPYGITADGGLLSSVLDLAKY 247 (447) T ss_dssp HHHHHHHS--SCHHHHHHHHTTTTTTCTTCBSSHHHHTTCSCBCCEEEECTTSCEEEECCCTTCCTTTCCEECHHHHHHH T ss_pred HHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 99999849--9999999997651128866354687344045410002117656536667766666554200789999999 Q ss_pred HHHHCCC Q ss_conf 5420136 Q gi|254780698|r 198 GILLRKN 204 (336) Q Consensus 198 ~~~~~~~ 204 (336) .+.++.+ T Consensus 248 ~~~~l~~ 254 (447) T 2qmi_A 248 LKMYIER 254 (447) T ss_dssp HHHHHTT T ss_pred HHHHHHC T ss_conf 9999748 No 52 >2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B* Probab=98.32 E-value=8.7e-05 Score=46.17 Aligned_cols=140 Identities=12% Similarity=0.026 Sum_probs=72.3 Q ss_pred CCEEEEECCCCEEEEE-------C------C-C-CCCC-CCHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 3199999889628311-------3------6-9-9888-813879999999-9997555898855411153676124544 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF-------K------Q-D-EPRY-PASLTKMMTLYI-IFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~-------K------n-~-~~~~-PASlTKlMTa~v-~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336) .+++|||..||+||.- . | + ..++ |.|+-|.+|.|. ++| .|.+..+..+.....-....+. T Consensus 66 ~a~vv~d~~TG~IlA~vg~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~~aaale---~g~~~~~~~~~~~~~~~~~~~~ 142 (390) T 2v2f_F 66 VASTVVDVSNGKVIAQLGARHQASNVSFGTNQAVETNRDWGSAMKPITDYAPAIE---YGVYDSTATMVNDIPYNYPGTS 142 (390) T ss_dssp EEEEEEETTTTEEEEEECCCC-----CCCCCTTTCCCSCCGGGGHHHHTHHHHHH---TTSCSBTTCEEEESCEECTTSS T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCCCCCC T ss_conf 8999998899949999967877767655643222056688741779999999997---6986664057526761015799 Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC----C--CCCCCCCC Q ss_conf 32257885688302457889987777765455420100578999888768872661222002454----3--33344530 Q gi|254780698|r 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG----L--HDKNQITT 190 (336) Q Consensus 117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G----l--~~~~~~tt 190 (336) ...-..+....-.--++-.+..|.|-.++-|++.++.+ .+-+.++.+|...-......+ + .......| T Consensus 143 ~~~~n~~~~~~G~vtl~~Al~~S~N~~~~~l~~~~G~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~vt 216 (390) T 2v2f_F 143 TPVYNWDRAYFGNITLQYALQQSRNVTAVETLNKVGLD------RAKTFLNGLGIDYPSMHYANAISSNTTESNKQYGAS 216 (390) T ss_dssp CEECCTTSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHTTTCCCSSCCGGGGSCSCSSCCCTTSSCC T ss_pred CCCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHCCCH------HHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCC T ss_conf 87430799857742299999863303788998753927------899999982999876444422232111058640458 Q ss_pred HHHHHHHHHHHC Q ss_conf 134555554201 Q gi|254780698|r 191 ARDQAILGILLR 202 (336) Q Consensus 191 a~Dla~l~~~~~ 202 (336) +.+|+.....+. T Consensus 217 plqma~ayaaia 228 (390) T 2v2f_F 217 SEKMAAAYAAFA 228 (390) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999986 No 53 >2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* Probab=98.31 E-value=5.4e-06 Score=53.39 Aligned_cols=134 Identities=14% Similarity=0.031 Sum_probs=77.0 Q ss_pred CCCCEEEEEC------------CCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEE Q ss_conf 8896283113------------699888-813879999999999755589885541115367612454432257885688 Q gi|254780698|r 61 VNKNQMTGFK------------QDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFT 127 (336) Q Consensus 61 ~~tG~ILy~K------------n~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~t 127 (336) .+.|+++|.. +++-++ .||+||.+|+++++..+++|++++|++|.- +--.... ...+.+| T Consensus 33 ~~~g~~~~~~~G~~~~~~~~p~t~dT~f~iaSvTK~~ta~~i~~lve~G~l~lddpv~~--ylp~~~~-----~~~~~iT 105 (371) T 2wzx_A 33 SLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQ--HWPALQG-----SRFDGIS 105 (371) T ss_dssp EETTEEEEEEEEBSCTTTCCBCCTTCEEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG--GCGGGTT-----SGGGGCB T ss_pred EECCEEEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCC-----CCCCCCH T ss_conf 99999999848750056698899999796304689999999999998699777786223--5873101-----4656204 Q ss_pred EEHHHHH----------------------HHHH-----------HH-HHHHHH---HHHHHCCHHHHHHHHHHHH-HHHH Q ss_conf 3024578----------------------8998-----------77-777654---5542010057899988876-8872 Q gi|254780698|r 128 TEQGILA----------------------LITR-----------SA-NDVSTA---FGEFISGSEKKFAILMSNK-AKKI 169 (336) Q Consensus 128 v~dLl~~----------------------lli~-----------S~-NdAa~a---lAe~i~Gs~~~Fv~~MN~~-A~~l 169 (336) +++||.- .+.. +- |-.-.. +.|.+.| ..|.+.|++. .+-| T Consensus 106 i~~LLsHtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtg--~~~~~~~~~~i~~PL 183 (371) T 2wzx_A 106 LLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLG--QPFERLMEQQVFPAL 183 (371) T ss_dssp HHHHHTTCSSCCCSSCCTTCCSCHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHHHHHT--SCHHHHHHHTHHHHT T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHCC--CCHHHHHHHHHCCCC T ss_conf 998852257997655664134569999999974787679995344346062898899998729--977775488750556 Q ss_pred CCCCCCEECCCCCC------------------------CCCCCCCHHHHHHHHHHHCC Q ss_conf 66122200245433------------------------33445301345555542013 Q gi|254780698|r 170 GMQNTIYKNASGLH------------------------DKNQITTARDQAILGILLRK 203 (336) Q Consensus 170 Gl~~t~f~np~Gl~------------------------~~~~~tta~Dla~l~~~~~~ 203 (336) ||++|.|.-+.... ..+-++|+.||++..+.++. T Consensus 184 gm~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~st~~Dla~~~~~~l~ 241 (371) T 2wzx_A 184 GLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLH 241 (371) T ss_dssp TCSSEESSCCGGGGGGBCCCBCGGGCBCCCCCCTTHHHHHCCEEEHHHHHHHHHHHHC T ss_pred CCCCCCCCCCHHHHCCCEEEECCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHC T ss_conf 8866516897466325212330489843406876666756001179999999999838 No 54 >2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens} Probab=98.30 E-value=9.9e-06 Score=51.80 Aligned_cols=150 Identities=17% Similarity=0.074 Sum_probs=84.0 Q ss_pred CCCCCEEEEECCCCEEEEEC------------CCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH------ Q ss_conf 87631999998896283113------------6998888-1387999999999975558988554111536761------ Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFK------------QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA------ 111 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~K------------n~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~------ 111 (336) .|..+..|+ ..|+|+|++ +++.+++ ||+||.+|+.+++..+++|++++|+++.---... T Consensus 21 ~pG~~v~v~--~~g~i~~~~~G~~d~~~~~~~~~dt~f~iaSisK~~ta~~i~~Lve~g~l~Ld~~v~~ylp~~~~~~~~ 98 (358) T 2qz6_A 21 IAGLSVAVI--QNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKLKLSDPASQYLPALRGDKFD 98 (358) T ss_dssp CSEEEEEEE--ETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGGCGGGTTSGGG T ss_pred CCEEEEEEE--ECCEEEEEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCC T ss_conf 986999999--999999985876006669899999979615478999999999999759987667043407744222457 Q ss_pred ---------CCCCCCCCCCCCCEEEEEHHHHHHHHH----------H-HHHHHHHH---HHHHCCHHHHHHHHHHHH-HH Q ss_conf ---------245443225788568830245788998----------7-77776545---542010057899988876-88 Q gi|254780698|r 112 ---------TQNPSKLYLKEKTYFTTEQGILALITR----------S-ANDVSTAF---GEFISGSEKKFAILMSNK-AK 167 (336) Q Consensus 112 ---------~~~~s~~~l~~g~~~tv~dLl~~lli~----------S-~NdAa~al---Ae~i~Gs~~~Fv~~MN~~-A~ 167 (336) ...|-.-.....+..+..+++..+.-. + .|-.-..| .|.+.| ..|.+.+.++ .. T Consensus 99 ~ITir~LLshtSG~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~iiE~~tg--~~~~~~~~e~i~~ 176 (358) T 2qz6_A 99 HISLLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIGLFGHLAAQSLG--QPFEKLMEQTVLP 176 (358) T ss_dssp SSBHHHHHTTCSSCCCSSCC-----CHHHHHHHHHCCCSSCTTTEECCCHHHHHHHHHHHHHTTT--SCHHHHHHHTTTG T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--CCHHHHHHHHHHC T ss_conf 51673143554576533567677999999999973898779994446345388898899999859--6988989999745 Q ss_pred HHCCCCCCEECCCCC------------------------CCCCCCCCHHHHHHHHHHHCCC Q ss_conf 726612220024543------------------------3334453013455555420136 Q gi|254780698|r 168 KIGMQNTIYKNASGL------------------------HDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 168 ~lGl~~t~f~np~Gl------------------------~~~~~~tta~Dla~l~~~~~~~ 204 (336) -|||++|.|.-+... ...+-++|+.|+++.++.++.. T Consensus 177 PLgm~~t~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gg~~st~~Dl~~~~~~ll~~ 237 (358) T 2qz6_A 177 KLGLKHTFISVPETQMSLYAQGYDKAGKPVRVSPGALDAEAYGIKTSTSDLIHYVEVNMHP 237 (358) T ss_dssp GGTCSSEESSCCGGGGGGBCCCBCTTSCBCCCCCCTTHHHHTCCEECHHHHHHHHHHHHCG T ss_pred CCCCCCCCCCCCHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 3598564268984660662200114896555036655655464315899999999998589 No 55 >3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis} Probab=98.28 E-value=5.1e-05 Score=47.58 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=77.8 Q ss_pred EEEEECCCCEEEEE---------C---CCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 99999889628311---------3---6998888-138799999999997555898855411153676124544322578 Q gi|254780698|r 56 SIVIDVNKNQMTGF---------K---QDEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKE 122 (336) Q Consensus 56 Aiv~D~~tG~ILy~---------K---n~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~ 122 (336) +|++ .+.|+|+++ + +++.+++ ||+||.+|+.+++..+++|++++++++.- +...... ...... T Consensus 27 ~v~v-~~~~~i~~~~~G~~d~~~~~~~~~~t~f~i~SvsK~~Ta~~i~~lv~~G~l~ld~~v~~--ylP~~~~-~~~~~~ 102 (351) T 3ozh_A 27 ALVV-IDNNQVVNRSFGETQPGNNIRPRPDSLIRIASITKLMTSEIMVKLADDGIVKLTDPLKK--YAPKGVN-VPSYSA 102 (351) T ss_dssp EEEE-EETTEEEEEEEECSSTTCCCCCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTCBGGG--GSCTTCC-CCCSST T ss_pred EEEE-EECCEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH--CCCHHHC-CCCCCC T ss_conf 9999-99999999989970167798999999686300899999999999998699998887201--3822203-677676 Q ss_pred CCEEEEE-----------------------------HHHHHHHHH----------HHHHHHHH----HHHHHCCHHHHHH Q ss_conf 8568830-----------------------------245788998----------77777654----5542010057899 Q gi|254780698|r 123 KTYFTTE-----------------------------QGILALITR----------SANDVSTA----FGEFISGSEKKFA 159 (336) Q Consensus 123 g~~~tv~-----------------------------dLl~~lli~----------S~NdAa~a----lAe~i~Gs~~~Fv 159 (336) .+.+|++ +++..+... +-++..+. +.|.+.| ..|. T Consensus 103 ~~~ITi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgt~~~Ysn~~~~lLg~iie~vtg--~~~~ 180 (351) T 3ozh_A 103 KQPIRLLHLASHTSGLPREQPGGPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYDLLADALSRAAG--KPYA 180 (351) T ss_dssp TCCCBHHHHHTTCSCCCSSCSSCCSSCCTTCCSCHHHHHHHHTTCCCCSCTTSEEECCHHHHHHHHHHHHHHHT--SCHH T ss_pred CCCEEHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCHH T ss_conf 78627899565747998766534022001134468999999985887689885464334378999999999879--8565 Q ss_pred HHHHH-HHHHHCCCCCCEECCCC--------------------CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 98887-68872661222002454--------------------33334453013455555420136 Q gi|254780698|r 160 ILMSN-KAKKIGMQNTIYKNASG--------------------LHDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 160 ~~MN~-~A~~lGl~~t~f~np~G--------------------l~~~~~~tta~Dla~l~~~~~~~ 204 (336) +.+++ -..-|||++|.|.-+.. .+..+-++|+.||++..+.++.. T Consensus 181 ~~~~~~I~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~agg~~st~~Dla~f~~~~l~~ 246 (351) T 3ozh_A 181 HLLRDKITAPLGMKNTTLTPTAEQCKRLMIGVGSSRCGNTVAAAGSGGIYSTPEDMQHWMQQFLAS 246 (351) T ss_dssp HHHHHHTHHHHTCTTCBSSCCHHHHTTBCCCTTCCCCCCCGGGTTTTCCEECHHHHHHHHHTTSCB T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 636865266679967774698467327000457677787555568655427899999999999569 No 56 >2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A* Probab=98.19 E-value=2.1e-05 Score=49.90 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=73.3 Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-------------CCCCCC-----CCCCCCCEEEEEHHHH Q ss_conf 98888-1387999999999975558988554111536761-------------245443-----2257885688302457 Q gi|254780698|r 73 EPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA-------------TQNPSK-----LYLKEKTYFTTEQGIL 133 (336) Q Consensus 73 ~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~-------------~~~~s~-----~~l~~g~~~tv~dLl~ 133 (336) +..++ ||+||.+|+.+++..+++|++++|++|.---... ...|-. ........++.++++. T Consensus 53 dT~f~i~SvtK~~ta~~v~~Lve~G~l~Ld~pv~~ylp~~~~~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~ 132 (363) T 2drw_A 53 DHLFRIASCTKSFIATGLHLLVQDGTVDLDEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVD 132 (363) T ss_dssp TCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHH T ss_pred CCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 99796303789999999999998799888887021587655678877999673856998654442224434468999999 Q ss_pred HHHHH----------HHHHHHH-H---HHHHHCCHHHHHHHHHHH-HHHHHCCCCCCEECCCCC---------------- Q ss_conf 88998----------7777765-4---554201005789998887-688726612220024543---------------- Q gi|254780698|r 134 ALITR----------SANDVST-A---FGEFISGSEKKFAILMSN-KAKKIGMQNTIYKNASGL---------------- 182 (336) Q Consensus 134 ~lli~----------S~NdAa~-a---lAe~i~Gs~~~Fv~~MN~-~A~~lGl~~t~f~np~Gl---------------- 182 (336) .+.-. +-++..+ . +-|.+.| ..|.+.+.+ -.+-|||++|.|..+... T Consensus 133 ~~~~~~~~~~pG~~~~Ysn~~~~llg~iie~vtg--~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~ 210 (363) T 2drw_A 133 FSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETG--KPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADD 210 (363) T ss_dssp HHHHHSCCCCTTSSCCCCSHHHHHHHHHHHHHHT--SCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTC T ss_pred HHHHCCCCCCCCCEEEECCCCEECCCHHHHHHCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC T ss_conf 8853776679984134135521101057776539--98999999875464798665767841244453331011145555 Q ss_pred ------------------------------CCCCCCCCHHHHHHHHHHHCCC Q ss_conf ------------------------------3334453013455555420136 Q gi|254780698|r 183 ------------------------------HDKNQITTARDQAILGILLRKN 204 (336) Q Consensus 183 ------------------------------~~~~~~tta~Dla~l~~~~~~~ 204 (336) ...+-++|+.||+++.+.++.. T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~sta~Dla~~~~~l~~g 262 (363) T 2drw_A 211 ENPQWDVSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDG 262 (363) T ss_dssp CSCSSBCTTCCCCBTTEEECTTTSCHHHHGGGTCEEECHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 5643233345666566334632123445666552118999999999998689 No 57 >3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Probab=98.07 E-value=0.00022 Score=43.81 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=79.2 Q ss_pred CCCEEEEECCCCEEEEE--C--------------------------------C-CC-CCC-CCHHHHHHHHHHHHHHHHC Q ss_conf 63199999889628311--3--------------------------------6-99-888-8138799999999997555 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF--K--------------------------------Q-DE-PRY-PASLTKMMTLYIIFEYLQS 95 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~--K--------------------------------n-~~-~~~-PASlTKlMTa~v~le~i~~ 95 (336) +.++++||..||+||.- . | +. ..+ |.|+-|++|+..+||. T Consensus 151 ~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~~pl~Nra~~~~y~PGStfK~~t~aaaLe~--- 227 (483) T 3lo7_A 151 KGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAA--- 227 (483) T ss_dssp CEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTTCTTSCTTTSCCBCCGGGGHHHHHHHHHHT--- T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHC--- T ss_conf 27999997899929999606888821013677411279998731464331014044125379884899999999980--- Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCC--------CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 898855411153676124544322--------578856883024578899877777654554201005789998887688 Q gi|254780698|r 96 KKLHLNTQIPVSKTAATQNPSKLY--------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167 (336) Q Consensus 96 g~i~~~~~v~is~~a~~~~~s~~~--------l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~ 167 (336) |.+..+...... .....+.... ......++ +...+..|.|-..+-++..++. +.+.+.++ T Consensus 228 G~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~g~~~----l~~Al~~S~N~~f~~l~~~~G~------~~~~~~~~ 295 (483) T 3lo7_A 228 GATETEQLTAAP--TIPLPGSTAQLENYGGAPCGDEPTVS----LREAFVKSCNTAFVQLGIRTGA------DALRSMAR 295 (483) T ss_dssp TCCTTCEEECCS--BCCC-------BCC---CCSSSSEEE----HHHHHHTTCHHHHHHHHHHHCH------HHHHHHHH T ss_pred CCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHCCHHHHHHHHHHCC------HHHHHHHH T ss_conf 985200010368--61136864211100254468987343----9999986042588899998394------03433577 Q ss_pred HHCCCCCCEECCCCCC-------------------CCCCCCCHHHHHHHHHHHC Q ss_conf 7266122200245433-------------------3344530134555554201 Q gi|254780698|r 168 KIGMQNTIYKNASGLH-------------------DKNQITTARDQAILGILLR 202 (336) Q Consensus 168 ~lGl~~t~f~np~Gl~-------------------~~~~~tta~Dla~l~~~~~ 202 (336) .+|+.......+.++. ......|+..|+.....+. T Consensus 296 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiA 349 (483) T 3lo7_A 296 AFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIA 349 (483) T ss_dssp HTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHC T ss_conf 608998556776444434456533345432201104554467788777666542 No 58 >1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1 Probab=98.07 E-value=2e-05 Score=50.03 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=77.9 Q ss_pred CCCCCEEEEECCCCEEEEECC-------------CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 876319999988962831136-------------998888-138799999999997555898855411153676124544 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFKQ-------------DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~Kn-------------~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336) .|.. +|.+ ...|+++|++. ++-+++ ||+||.+|+.+++..+++|++ +|++|. ++--.. T Consensus 22 vPG~-avaV-v~~g~~v~~~~~G~ad~~~~~p~t~~T~f~iaSvSK~fTa~~vl~Lve~G~l-Lddpv~--~ylP~~--- 93 (520) T 1ei5_A 22 GPGG-VVAV-VKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLDAVGEPEL-LDDALE--AYLDKF--- 93 (520) T ss_dssp SSEE-EEEE-EETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHHHTCSGGG-GHHHHH--HHTTTC--- T ss_pred CCCE-EEEE-EECCEEEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC-CCCHHH--HHCCCC--- T ss_conf 9818-9999-9999999998277750677998999986971708999999999999974994-568178--868465--- Q ss_pred CCCCCCCCEEEEEHHHHH---------HHHH--------------------------------HH-HHHHHH---HHHHH Q ss_conf 322578856883024578---------8998--------------------------------77-777654---55420 Q gi|254780698|r 117 KLYLKEKTYFTTEQGILA---------LITR--------------------------------SA-NDVSTA---FGEFI 151 (336) Q Consensus 117 ~~~l~~g~~~tv~dLl~~---------lli~--------------------------------S~-NdAa~a---lAe~i 151 (336) .++.+|+++||.- .... +- |-.-.. +.|.+ T Consensus 94 -----~~~~iTir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~YSN~gy~lLg~iiE~v 168 (520) T 1ei5_A 94 -----EDERPAVRDLCNNQSGLRDYWALSVLCGADPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFRILADLIEAH 168 (520) T ss_dssp -----CSCCCCHHHHHTTCSCCCCHHHHHHHTTCCTTCCBCHHHHHHHHHTCCCCSSCTTSSCCCCHHHHHHHHHHHHHH T ss_pred -----CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHH T ss_conf -----668886899606877897543443223556201245355999986257776898966764751676766768877 Q ss_pred CCHHHHHHHHHHH-HHHHHCCCCCCEECCCCC-------------------------CCCCCCCCHHHHHHHHHHHCC Q ss_conf 1005789998887-688726612220024543-------------------------333445301345555542013 Q gi|254780698|r 152 SGSEKKFAILMSN-KAKKIGMQNTIYKNASGL-------------------------HDKNQITTARDQAILGILLRK 203 (336) Q Consensus 152 ~Gs~~~Fv~~MN~-~A~~lGl~~t~f~np~Gl-------------------------~~~~~~tta~Dla~l~~~~~~ 203 (336) .| ..|.+.+.+ -.+-|||++|.|..+... ...+-++|+.||++..+.+.. T Consensus 169 tG--~s~~~~l~e~I~~PLGM~~t~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~gaggl~sT~~Dl~~~~~~l~~ 244 (520) T 1ei5_A 169 TG--RTLVDILSERIFAPAGMKRAELISDTALFDECTGYEGDTVRGFLPATNRIQWMGDAGICASLNDMIAWEQFIDA 244 (520) T ss_dssp HT--SCHHHHHHHHTHHHHTCTTCEECCBGGGCCSSCCEEEETTTEEEECCCCBBCCSSSCEEECHHHHHHHHHHHHH T ss_pred HC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC T ss_conf 19--98889507764154588555058872233444310044567744567755445776424079999999999767 No 59 >1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C* Probab=98.06 E-value=0.00037 Score=42.39 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=67.0 Q ss_pred CCCEEEEECCCCEEEEEC--------------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 631999998896283113--------------------6-9-9888-813879999999999755589885541115367 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGFK--------------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKT 109 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~K--------------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~ 109 (336) ..++||||..||+||.-- | . ...+ |.|+=|++|+..++|. |.+..++.+..... T Consensus 240 ~g~~Vvmd~~TG~IlAmas~p~~d~n~~~~~~~~~~~~~~~~~~~~~PGStfK~~t~aaALe~---g~~~~~~~~~~~~~ 316 (702) T 1qme_A 240 YMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDN---NTFPGGEVFNSSEL 316 (702) T ss_dssp EEEEEEEETTTCBEEEEEEESCCCTTTCTTCCTTCCCCCTTTSCCBCCGGGGHHHHHHHHHHT---TCCCTTCEEECSCE T ss_pred CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHC---CCCCCCCEEECCCC T ss_conf 237999977899089983257777554434563222025310112577520229989999976---97323302301340 Q ss_pred HHCCCCCCC-------CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 612454432-------25788568830245788998777776545542010057899988876887266122 Q gi|254780698|r 110 AATQNPSKL-------YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174 (336) Q Consensus 110 a~~~~~s~~-------~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t 174 (336) ..++... ....+..+++++. +..|.|-..+.+++.++. +.+-+.++++|+... T Consensus 317 --~~~~~~~~~~~~~~~~~~~G~itl~~a----l~~S~N~~~~~l~~~lG~------~~~~~~~~~fG~g~~ 376 (702) T 1qme_A 317 --KIADATIRDWDVNEGLTGGRMMTFSQG----FAHSSNVGMTLLEQKMGD------ATWLDYLNRFKFGVP 376 (702) T ss_dssp --EETTEEECCHHHHTTSCSCCEEEHHHH----HHTTCHHHHHHHHHHHCH------HHHHHHHHHTTTTSC T ss_pred --EECCCCCCCCCCCCCCCCCCEEEHHHH----CCCCCCHHHHHHHHHCCC------HHHHHHHHHHCCCCC T ss_conf --436852102446766778720013441----252337125666542584------367889886078866 No 60 >3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* Probab=97.97 E-value=0.00069 Score=40.81 Aligned_cols=202 Identities=16% Similarity=0.092 Sum_probs=102.3 Q ss_pred CCEEEEECCCCEEEEE--C-C--------C-CC-CCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHCCCCCCCC Q ss_conf 3199999889628311--3-6--------9-98-888138799999999997555898-855411153676124544322 Q gi|254780698|r 54 YSSIVIDVNKNQMTGF--K-Q--------D-EP-RYPASLTKMMTLYIIFEYLQSKKL-HLNTQIPVSKTAATQNPSKLY 119 (336) Q Consensus 54 ~sAiv~D~~tG~ILy~--K-n--------~-~~-~~PASlTKlMTa~v~le~i~~g~i-~~~~~v~is~~a~~~~~s~~~ 119 (336) .++|++|.+||+||.- . + + .. +.|.|+-|..+.+.+++. |.+ ++++.+.-.......++...+ T Consensus 419 gA~Vv~Dp~TGeIlAmvGg~~~~~~~fNra~~a~r~pGSt~KP~~y~aAL~~---g~~~~~~t~~~D~p~~~~~~~g~~~ 495 (751) T 3fwm_A 419 TAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ---PKIYRLNTWIADAPIALRQPNGQVW 495 (751) T ss_dssp EEEEEEETTTCBEEEEECSSSCSSCSSCHHHHCCEECGGGGHHHHHHHHHTC---TTTCCTTCEEECSCCCEECSSSCEE T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHC---CCCCCCCEEECCCCEEEECCCCCCC T ss_conf 5899986899978999644423445555000134455554541789999973---8874453374267637757998531 Q ss_pred --------CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCH Q ss_conf --------578856883024578899877777654554201005789998887688726612220024543333445301 Q gi|254780698|r 120 --------LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTA 191 (336) Q Consensus 120 --------l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~~~tta 191 (336) ......++ +.-.+..|-|..++-++..++-. .+-+.++++|..........++.-.....|+ T Consensus 496 ~p~n~d~~~~~~G~v~----l~~AL~~S~N~~~v~l~~~lG~~------~~~~~~~k~Gi~~~~~~~~ps~~lG~~~vTP 565 (751) T 3fwm_A 496 SPQNDDRRYSESGRVM----LVDALTRSMNVPTVNLGMALGLP------AVTETWIKLGVPKDQLHPVPAMLLGALNLTP 565 (751) T ss_dssp CCCCTTSCCCTTSEEE----HHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHHHTCCGGGCCCSGGGGGTCCEECH T ss_pred CCCCCCCCCCCCCCEE----HHHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHCCCCCCCCCCCCHHHCCCCCCCH T ss_conf 7866776657876231----43343402359999998862808------9999999849985567898066538862578 Q ss_pred HHHHHHHHHHCCC----CEEEE-EEEEEE---EEEE--CCEEE------EEECHHC-------------CCCCC-CEEEE Q ss_conf 3455555420136----20467-761156---5434--78699------7210102-------------57687-00565 Q gi|254780698|r 192 RDQAILGILLRKN----FPQYY-KYFSIR---KFRY--RNRII------TNHNKLL-------------NKMHN-IDGIK 241 (336) Q Consensus 192 ~Dla~l~~~~~~~----~p~~~-~~~s~~---~~~~--~~~~~------~n~N~lL-------------~~~~g-~~G~K 241 (336) .+||.....+... .|.+. ++.... -+.. ..... ...+.+| ...++ -.++| T Consensus 566 lqmA~aYatiANgG~~~~P~~I~~I~d~dG~vi~~~~~~~~~vis~~tA~~v~~~M~~VV~~GTg~~~~~~~~~~~vAGK 645 (751) T 3fwm_A 566 IEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGK 645 (751) T ss_dssp HHHHHHHHHHHTTSEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTSTTHHHHHHSGGGCCEEE T ss_pred HHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEE T ss_conf 89888999997498583568999999899988703689776368999999999999987555673001123899759998 Q ss_pred ECCCCCCCCE-EEEEEEECCEEEEEEEECCC Q ss_conf 2242333717-99999978979999981799 Q gi|254780698|r 242 TGYTRNSGFN-IVTSLRYKDDPIVAVVMGMP 271 (336) Q Consensus 242 TG~T~~AG~c-lv~~a~~~g~~lI~Vvlg~~ 271 (336) ||+|+...-. ||+. +++-.++|.+|-+ T Consensus 646 TGTT~~~rDaWFvG~---tp~~~~~VWvG~D 673 (751) T 3fwm_A 646 TGTTNNNVDTWFAGI---DGSTVTITWVGRD 673 (751) T ss_dssp EEECGGGSEEEEEEE---CSSEEEEEEEECT T ss_pred CCCCCCCCEEEEEEC---CCCEEEEEEEECC T ss_conf 863799705999985---8996999999778 No 61 >3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A* Probab=97.91 E-value=0.00051 Score=41.61 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=82.6 Q ss_pred CCCEEEEECCCCEEEEE--C-----------------C-C-CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 63199999889628311--3-----------------6-9-98-888138799999999997555898855411153676 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF--K-----------------Q-D-EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~--K-----------------n-~-~~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a 110 (336) ..+++|||.+||+||.- . | + .. +.|.|+-|..|+..++| .|.+..++.+...... T Consensus 231 ~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle---~g~~~~~~~~~~~~~~ 307 (564) T 3oc2_A 231 AGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALA---SGRWKPSDIVDVYPGT 307 (564) T ss_dssp CEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHH---TTSCCTTCEEECTTSE T ss_pred EEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCC T ss_conf 0269997268883887237898664321246846777577618678863577899999997---7972564267527862 Q ss_pred HCCCCC--CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC-----CC Q ss_conf 124544--32257885688302457889987777765455420100578999888768872661222002454-----33 Q gi|254780698|r 111 ATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG-----LH 183 (336) Q Consensus 111 ~~~~~s--~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G-----l~ 183 (336) ...+.. ...-.....++ +...+..|.|...+-+++.++.. .+.+.++++|+....-....+ .+ T Consensus 308 ~~~g~~~~~~~~~~~g~~~----l~~al~~S~Nv~f~~l~~~lg~~------~~~~~~~~fG~g~~~~id~p~~~~~~~~ 377 (564) T 3oc2_A 308 LQIGRYTIRDVSRNSRQLD----LTGILIKSSNVGISKIAFDIGAE------SIYSVMQQVGLGQDTGLGFPGERVGNLP 377 (564) T ss_dssp EEETTEEEECSCCCCSEEE----HHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHHTTTTSCCCCSCTTCCCCBCC T ss_pred EECCCCEEECCCCCCCCHH----HHHHHHCCCCHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 5358710201323455202----11101216671999999987589------9999999779987779997422157777 Q ss_pred ---------------CCCCCCCHHHHHHHHHHHCC Q ss_conf ---------------33445301345555542013 Q gi|254780698|r 184 ---------------DKNQITTARDQAILGILLRK 203 (336) Q Consensus 184 ---------------~~~~~tta~Dla~l~~~~~~ 203 (336) ..+...|+..|+.....+.. T Consensus 378 ~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~iAN 412 (564) T 3oc2_A 378 NHRKWPKAETATLAYGYGLSVTAIQLAHAYAALAN 412 (564) T ss_dssp CCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCC T ss_conf 64432233200221388734679999998876227 No 62 >3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A* Probab=97.85 E-value=0.00088 Score=40.16 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=68.8 Q ss_pred CCCEEEEECCCCEEEEE--C-----------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH Q ss_conf 63199999889628311--3-----------------6-9-9888-8138799999999997555898855411153676 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF--K-----------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA 110 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~--K-----------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a 110 (336) ..+++++|.+||+||.- . | + ...+ |+|+-|.+|++.+++. |.+..+..+..... T Consensus 223 ~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~~---g~~~~~~~~~~~~~- 298 (542) T 3equ_A 223 AGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDA---GKTDLNERLNTQPY- 298 (542) T ss_dssp EEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHHH---TSSCTTCEEECCCE- T ss_pred CCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHC---CCEECCEECCCCCC- T ss_conf 63489850677836764267766622123566311243444076778426668999999856---96303301145775- Q ss_pred HCCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 124544322-578856883024578899877777654554201005789998887688726612 Q gi|254780698|r 111 ATQNPSKLY-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 (336) Q Consensus 111 ~~~~~s~~~-l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~ 173 (336) ..++.... -.....+++ ...+..|.|-..+-+++.++. +.+-+.++++|+.. T Consensus 299 -~~~~~~~~~~~~~G~~~l----~~al~~S~N~~~~~l~~~~g~------~~~~~~~~~fG~g~ 351 (542) T 3equ_A 299 -KIGPSPVRDTHVYPSLDV----RGIMQKSSNVGTSKLSARFGA------EEMYDFYHELGIGV 351 (542) T ss_dssp -EETTEEECCSSCCSEEEH----HHHHHHTCHHHHHHHHTTSCH------HHHHHHHHHTTTTS T ss_pred -CCCCCCCCCCCCCCCCCH----HHHHHCCCEEHHHHHHHHCCH------HHHHHHHHHCCCCC T ss_conf -344321123367784248----998541745154578887295------88999999749986 No 63 >2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A* Probab=97.75 E-value=0.00012 Score=45.34 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=81.3 Q ss_pred CEEEEECCCCEEEEEC-----CCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEE Q ss_conf 1999998896283113-----699888-8138799999999997555898855411153676124544322578856883 Q gi|254780698|r 55 SSIVIDVNKNQMTGFK-----QDEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTT 128 (336) Q Consensus 55 sAiv~D~~tG~ILy~K-----n~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv 128 (336) .|++|= ..|+|+||+ +++.+. .+|+||-+|+.++...+++|+|+++++|. .+.....++ ..+.+|+ T Consensus 83 ~a~lV~-~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~lig~lv~~G~l~ldd~v~--~ylPe~~~~-----~~~~iTi 154 (392) T 2dcf_A 83 DAFLVL-RGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVT--EYVPELAGS-----VYDGPSV 154 (392) T ss_dssp EEEEEE-ETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGG--GTCGGGTTS-----TTSSCBH T ss_pred CEEEEE-ECCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC--EECHHHCCC-----CCCCCCH T ss_conf 189999-99999999648999978826257679999999999999839655433300--203322145-----3344549 Q ss_pred EHHHHH----------------------------------------HHH-----------HH--HHHHHHHHHHHHCCHH Q ss_conf 024578----------------------------------------899-----------87--7777654554201005 Q gi|254780698|r 129 EQGILA----------------------------------------LIT-----------RS--ANDVSTAFGEFISGSE 155 (336) Q Consensus 129 ~dLl~~----------------------------------------lli-----------~S--~NdAa~alAe~i~Gs~ 155 (336) ++||.- +.. .| +-+..-.+.|.+.| T Consensus 155 r~LL~mtsGl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~f~Y~~~~~~llg~vle~~tG-- 232 (392) T 2dcf_A 155 LQVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTG-- 232 (392) T ss_dssp HHHHTTCBCCSCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHC-- T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHC-- T ss_conf 888544278876545355630456666654202123368799999875176679997599956878999999999979-- Q ss_pred HHHHHHHHHHH-HHHCCCCCCEEC--CCCCC--CCCCCCCHHHHHHHHHHHCCC Q ss_conf 78999888768-872661222002--45433--334453013455555420136 Q gi|254780698|r 156 KKFAILMSNKA-KKIGMQNTIYKN--ASGLH--DKNQITTARDQAILGILLRKN 204 (336) Q Consensus 156 ~~Fv~~MN~~A-~~lGl~~t~f~n--p~Gl~--~~~~~tta~Dla~l~~~~~~~ 204 (336) ..|.+.+.++. ..|||.++.+.. +.|.. ..+-.+|++|++++...++.+ T Consensus 233 ~~~~~~~~e~i~~plG~~~~~~~~~~~~g~~~~~~Gl~~t~rD~ar~g~l~l~~ 286 (392) T 2dcf_A 233 LRYVEALSTYLWAKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDG 286 (392) T ss_dssp SCHHHHHHHHTGGGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 988998898851656776555302377787433356767788999999999718 No 64 >3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A Probab=97.63 E-value=5.8e-05 Score=47.21 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=40.1 Q ss_pred CCCCCEEEEECCCCEEEEECC------------------CCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 876319999988962831136------------------99888-813879999999999755589885541115 Q gi|254780698|r 51 KPKYSSIVIDVNKNQMTGFKQ------------------DEPRY-PASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 (336) Q Consensus 51 ~~~~sAiv~D~~tG~ILy~Kn------------------~~~~~-PASlTKlMTa~v~le~i~~g~i~~~~~v~i 106 (336) .|-. ++++-...|+|+|+|. ++-.+ .||+||.+|+.+++..+++|++++|++|.- T Consensus 49 iPG~-~v~v~~~~G~vvy~~~~G~~~~~~~~~~~~~Pvt~dT~f~iaSiTK~~Ta~ai~~Lve~G~L~LddpV~~ 122 (432) T 3hlc_A 49 IPGA-VIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDR 122 (432) T ss_dssp CSEE-EEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHHHHHTTSCCTTSBTTT T ss_pred CCCE-EEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 9966-9999946997999874621444566544689999999796102379999999999998699888870312 No 65 >1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Probab=97.56 E-value=0.0011 Score=39.57 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=72.6 Q ss_pred CCCEEEEECCCCEEEEE-CCC-------------------------------CCCC-CCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 63199999889628311-369-------------------------------9888-81387999999999975558988 Q gi|254780698|r 53 KYSSIVIDVNKNQMTGF-KQD-------------------------------EPRY-PASLTKMMTLYIIFEYLQSKKLH 99 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy~-Kn~-------------------------------~~~~-PASlTKlMTa~v~le~i~~g~i~ 99 (336) ..+++++|..||+||.- ..+ ...+ |.|+-|++|+..+|+ .|.+. T Consensus 322 ~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i~ 398 (646) T 1vqq_A 322 YGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTLD 398 (646) T ss_dssp SEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSSC T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCCC T ss_conf 352899824667067775057655442114653122122335621455555451113454201788999997---69979 Q ss_pred CCCCCCCCHHHHCCCCCCCC-----CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 55411153676124544322-----5788-56883024578899877777654554201005789998887688726612 Q gi|254780698|r 100 LNTQIPVSKTAATQNPSKLY-----LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 (336) Q Consensus 100 ~~~~v~is~~a~~~~~s~~~-----l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~ 173 (336) +++.+.+....+..+.+.-. ...+ ..+ -+.-.+..|.|-..+-+|..++.. .+.+.++++|+.. T Consensus 399 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v----~l~~al~~S~N~~f~~la~~lg~~------~l~~~a~~fG~g~ 468 (646) T 1vqq_A 399 DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNI----DLKQAIESSDNIFFARVALELGSK------KFEKGMKKLGVGE 468 (646) T ss_dssp TTCEEEECSSEECSSGGGTTCCEECSSCCCEEE----EHHHHHHTTCHHHHHHHHHHHCHH------HHHHHHHHTTTTS T ss_pred CCCEEEECCCCEECCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHH------HHHHHHHHCCCCC T ss_conf 998799478414346776764334667888723----212030578789999999876388------9998887636898 Q ss_pred C Q ss_conf 2 Q gi|254780698|r 174 T 174 (336) Q Consensus 174 t 174 (336) . T Consensus 469 ~ 469 (646) T 1vqq_A 469 D 469 (646) T ss_dssp C T ss_pred C T ss_conf 8 No 66 >2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B Probab=97.15 E-value=0.011 Score=33.71 Aligned_cols=135 Identities=17% Similarity=0.085 Sum_probs=69.7 Q ss_pred CCEEEEECCCCEEEE-E------C---C-CC--CCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC Q ss_conf 319999988962831-1------3---6-99--8888138799999-999997555898855411153676124544322 Q gi|254780698|r 54 YSSIVIDVNKNQMTG-F------K---Q-DE--PRYPASLTKMMTL-YIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLY 119 (336) Q Consensus 54 ~sAiv~D~~tG~ILy-~------K---n-~~--~~~PASlTKlMTa-~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~ 119 (336) .++++||..||+||. . . | +. .|.|.|+-|-++. ..++| +|.+..++.+.-...... ++.... T Consensus 125 ~a~Vv~d~~TG~IlAmvgg~~y~~~~~Nra~~~~rqPGStfKP~v~yaaAle---~g~~~~~t~~~d~p~~~~-~~~~~~ 200 (494) T 2bg1_A 125 VGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAID---QGLMGSETILSNYPTNFA-NGNPIM 200 (494) T ss_dssp EEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHH---TTSCCTTCEEECSCCBCT-TSCBCC T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCEEC-CCCCEE T ss_conf 9999998999909999989899977656757088687223999999999997---699997555578872113-667424 Q ss_pred C---CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC-CCCCCCHHHHH Q ss_conf 5---7885688302457889987777765455420100578999888768872661222002454333-34453013455 Q gi|254780698|r 120 L---KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD-KNQITTARDQA 195 (336) Q Consensus 120 l---~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~-~~~~tta~Dla 195 (336) - .....++ ++-.+..|-|-.++-+++.+....-.. -..+..+|.....+..++ +.- .....|..+|+ T Consensus 201 ~~~~~~~G~vt----l~~al~~S~Ni~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~s-~a~Gg~~~vTplqma 271 (494) T 2bg1_A 201 YANSKGTGMMT----LGEALNYSWNIPAYWTYRMLRENGVDV----KGYMEKMGYEIPEYGIES-LPMGGGIEVTVAQHT 271 (494) T ss_dssp BTTBCCCCEEE----HHHHHHHTCSHHHHHHHHHHHHTTCCH----HHHHHHTTCCCSCCCCTT-GGGTTTCCBCHHHHH T ss_pred CCCCCCCCEEE----HHHHHHHCCCHHHHHHHHHHCCCCHHH----HHHHHCCCCCCCCCCCCC-HHCCCCCCCCHHHHH T ss_conf 46787874468----999986374618888898854442433----444413577887666221-001687554206888 Q ss_pred HHHHHH Q ss_conf 555420 Q gi|254780698|r 196 ILGILL 201 (336) Q Consensus 196 ~l~~~~ 201 (336) .....+ T Consensus 272 ~ayat~ 277 (494) T 2bg1_A 272 NGYQTL 277 (494) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 67 >2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A* Probab=95.94 E-value=0.07 Score=28.85 Aligned_cols=140 Identities=14% Similarity=0.010 Sum_probs=73.9 Q ss_pred CCCEEEEECCCCEEEE-------E----CCC-CC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC- Q ss_conf 6319999988962831-------1----369-98-88813879999999999755589885541115367612454432- Q gi|254780698|r 53 KYSSIVIDVNKNQMTG-------F----KQD-EP-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL- 118 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy-------~----Kn~-~~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~- 118 (336) ..+++|||..||+||. . .|. .. |.|.|+-|..++|.++++- +.+..+..+.. ......++... T Consensus 301 ~~a~vv~d~~TG~IlAmvgg~~~~~~~~~~~~~~~r~pGStfKp~~~~aa~~e~--~~~~~~~~~~~-~~~~~~~~~~~~ 377 (669) T 2olv_A 301 QVGATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIEN--MKWATNHAIQD-ESSYQVDGSTFR 377 (669) T ss_dssp EEEEEEEETTTCBEEEEESSTTCCTTTSCCTTSSCEECGGGGHHHHTHHHHHHH--HCCCTTBEEEC-CSCEESSSCEEC T ss_pred CEEEEEEECCCCCEEEEECCCCCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHCC--CCCCCCCCCCC-CCCCCCCCCCCC T ss_conf 168999978999189996277410003305452204566433312454444226--64322211346-665434676543 Q ss_pred -C-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCC-CCCCCCCCCCHHHHH Q ss_conf -2-5788568830245788998777776545542010057899988876887266122200245-433334453013455 Q gi|254780698|r 119 -Y-LKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS-GLHDKNQITTARDQA 195 (336) Q Consensus 119 -~-l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~-Gl~~~~~~tta~Dla 195 (336) + -.....++ ++-.+..|-|-.++-++..++. ..+.+.+.+.+..+|+....-.+|. .+--.....|..+|+ T Consensus 378 N~~~~~~G~vt----l~~Al~~S~N~~av~l~~~lg~--~~g~~~~~~~~~~~Gi~~~~~~~~~~~lg~g~~~vtplqma 451 (669) T 2olv_A 378 NYDTKSHGTVS----IYDALRQSFNIPALKAWQSVKQ--NAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLA 451 (669) T ss_dssp CSSCSCCCEEE----HHHHHHTTCHHHHHHHHHHHHH--HTCTTHHHHHHHTTTCCCSSCCCHHHHTTCTTCEECHHHHH T ss_pred CCCCCCCCCHH----HHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHH T ss_conf 68887667548----9999874862899999999988--76478999999980999523467401035763324688999 Q ss_pred HHHHHH Q ss_conf 555420 Q gi|254780698|r 196 ILGILL 201 (336) Q Consensus 196 ~l~~~~ 201 (336) .....+ T Consensus 452 ~ayat~ 457 (669) T 2olv_A 452 SAFAAI 457 (669) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 68 >2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A* Probab=95.94 E-value=0.07 Score=28.84 Aligned_cols=136 Identities=16% Similarity=0.081 Sum_probs=69.4 Q ss_pred CCCEEEEECCCCEEEE-EC---------C-C-C-CCCCCHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 6319999988962831-13---------6-9-9-888813879999-999999755589885541115367612454432 Q gi|254780698|r 53 KYSSIVIDVNKNQMTG-FK---------Q-D-E-PRYPASLTKMMT-LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKL 118 (336) Q Consensus 53 ~~sAiv~D~~tG~ILy-~K---------n-~-~-~~~PASlTKlMT-a~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~ 118 (336) ..++++||..||+||. .- | + . .|.|.|.+|-.. ...++ +.|....++.+....... .++... T Consensus 350 ~~a~Vv~Dp~TG~IlAmvGg~~~~~~~~n~a~~a~rqpGSs~Kp~~~yaaAl---e~G~~~~~t~~~d~~~~~-~~~~~~ 425 (720) T 2jch_A 350 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAI---DQGLMGSETILSNYPTNF-ANGNPI 425 (720) T ss_dssp EEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHH---HTTSCCTTCEEECSCCBC-TTSCBC T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH---HCCCCCCCEEEECCCCCC-CCCCCC T ss_conf 3679999889997889842785001123220024444013220257799998---649999861773278333-468853 Q ss_pred ---CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCC-CCCCHHHH Q ss_conf ---25788568830245788998777776545542010057899988876887266122200245433334-45301345 Q gi|254780698|r 119 ---YLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN-QITTARDQ 194 (336) Q Consensus 119 ---~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl~~~~-~~tta~Dl 194 (336) .-+....++++ -.+..|-|-.++-+.+.+....-.. ...++.+|.....+..+ .+.-.. ...|..+| T Consensus 426 ~~~~~~~~G~vtl~----~Al~~S~Nv~a~~~~~~~~~~g~~~----~~~~~~~G~~~~~~~~~-slalGg~~~vTplqm 496 (720) T 2jch_A 426 MYANSKGTGMMTLG----EALNYSWNIPAYWTYRMLRENGVDV----KGYMEKMGYEIPEYGIE-SLPMGGGIEVTVAQH 496 (720) T ss_dssp CBTTBCCCSEEEHH----HHHHHTCSHHHHHHHHHHHHTTCCH----HHHHHHTTCCCSCCCCT-TGGGTTTCCBCHHHH T ss_pred CCCCCCCCCCCCHH----HHHHHCCCHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCCCCC-CHHHHCCCCCCCHHH T ss_conf 14666678733288----9988467745899999850111569----99999739986555653-323412234200342 Q ss_pred HHHHHHH Q ss_conf 5555420 Q gi|254780698|r 195 AILGILL 201 (336) Q Consensus 195 a~l~~~~ 201 (336) +.....+ T Consensus 497 a~aYat~ 503 (720) T 2jch_A 497 TNGYQTL 503 (720) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 2130031 No 69 >1ksh_B Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase delta-subunit...; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* Probab=40.47 E-value=15 Score=14.99 Aligned_cols=20 Identities=5% Similarity=-0.061 Sum_probs=14.9 Q ss_pred CEEEEECCCCEEEEECCCCC Q ss_conf 19999988962831136998 Q gi|254780698|r 55 SSIVIDVNKNQMTGFKQDEP 74 (336) Q Consensus 55 sAiv~D~~tG~ILy~Kn~~~ 74 (336) .-.+=|++||+|||+.+.+. T Consensus 21 ~~~iRDaeTG~vlwe~~~d~ 40 (152) T 1ksh_B 21 WMNLRDAETGKILWQGTEDL 40 (152) T ss_dssp EEEEEETTTTEEEEEECSCT T ss_pred EEEEEECCCCEEEEEECCCC T ss_conf 88865077680898606787 No 70 >3nqz_A MCP-02, secreted metalloprotease MCP02; autoprocessed complex, the thermolysin family, hydro; 2.05A {Pseudoalteromonas SP} PDB: 3nqy_A Probab=38.39 E-value=13 Score=15.28 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=5.3 Q ss_pred CEEEEECCCCC Q ss_conf 01574127665 Q gi|254780698|r 323 SQFKKIDAKAH 333 (336) Q Consensus 323 ~~~~~~~~~~~ 333 (336) +....+|+... T Consensus 159 ~~~~~VDA~TG 169 (180) T 3nqz_A 159 RPYLIIDANTG 169 (180) T ss_dssp CEEEEEETTTC T ss_pred CEEEEEECCCC T ss_conf 05899989988 No 71 >1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Probab=25.35 E-value=12 Score=15.50 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=29.9 Q ss_pred EEHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHCCCCCCEECC Q ss_conf 30245788998777776545-54201005789998887688726612220024 Q gi|254780698|r 128 TEQGILALITRSANDVSTAF-GEFISGSEKKFAILMSNKAKKIGMQNTIYKNA 179 (336) Q Consensus 128 v~dLl~~lli~S~NdAa~al-Ae~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np 179 (336) +-|..-. --.+||-||+.+ ++.... +.|-+-|+++++..|.|..+ T Consensus 26 ~vdaFt~-~~f~GNpaaVv~~~~~l~~------~~mq~IA~e~n~sET~Fv~~ 71 (298) T 1xub_A 26 IIDAFAS-VPLEGNPVAVFFDADDLPP------AQMQRIAREMNLSESTFVLK 71 (298) T ss_dssp EEEETCS-STTSSEEEEEECSGGGSCH------HHHHHHHHHHCSSCEEEEEC T ss_pred EEEECCC-CCCCCCCEEEEECCCCCCH------HHHHHHHHHHCCCEEEEEEC T ss_conf 9966418-9999861599968989999------99999999869966999855 No 72 >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Probab=24.63 E-value=27 Score=13.39 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=12.2 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 999981799878999999999999 Q gi|254780698|r 263 IVAVVMGMPTSQERDQKALELITS 286 (336) Q Consensus 263 lI~Vvlg~~s~~~R~~~~~~Ll~~ 286 (336) +++|+||++|+...-+++.+.|+. T Consensus 13 ~V~IimGS~SD~~~~~~a~~~L~~ 36 (170) T 1xmp_A 13 LVGVIMGSTSDWETMKYACDILDE 36 (170) T ss_dssp SEEEEESSGGGHHHHHHHHHHHHH T ss_pred CEEEEECCHHHHHHHHHHHHHHHH T ss_conf 189998978469999999999998 No 73 >1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* Probab=23.22 E-value=29 Score=13.22 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=33.8 Q ss_pred CCCCEEEEECCCCEEEEECCCCCCCC-CHHHHHHHHHHHHHHH Q ss_conf 76319999988962831136998888-1387999999999975 Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIFEYL 93 (336) Q Consensus 52 ~~~sAiv~D~~tG~ILy~Kn~~~~~P-ASlTKlMTa~v~le~i 93 (336) |..=+|-+=.-.|+++..-+.+.+++ -|++|++|..++++.. T Consensus 49 p~~fgiai~t~dG~~~~~GD~~~~FsiQSisK~f~l~~al~~~ 91 (330) T 1mki_A 49 DSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSR 91 (330) T ss_dssp TTCCEEEEECTTSCEEEEESTTCCEECGGGHHHHHHHHHHHHH T ss_pred HHHCEEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH T ss_conf 0785899993799589668858865479989999999999987 No 74 >1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Probab=20.79 E-value=20 Score=14.24 Aligned_cols=43 Identities=12% Similarity=-0.094 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCCCEECCCCC Q ss_conf 877777654554201-005789998887688726612220024543 Q gi|254780698|r 138 RSANDVSTAFGEFIS-GSEKKFAILMSNKAKKIGMQNTIYKNASGL 182 (336) Q Consensus 138 ~S~NdAa~alAe~i~-Gs~~~Fv~~MN~~A~~lGl~~t~f~np~Gl 182 (336) .+||.||+.+...+. .... .+.|-+-|+++|...|-|.-|..- T Consensus 18 ~~GNpaaVv~~~~~~~~~l~--~~~mq~IA~e~n~sET~Fv~~~~~ 61 (300) T 1ym5_A 18 FMGNPVAVINFLEIDENEVS--QEELQAIANWTNLSETTFLFKPSD 61 (300) T ss_dssp TSSEEEEEEECTTSCGGGSC--HHHHHHHHHHHTSSCEEEEECCSS T ss_pred CCCCCEEEEEECCCCCCCCC--HHHHHHHHHHHCCCEEEEEECCCC T ss_conf 98858499985667857989--999999999869977999967888 Done!