RPSBLAST alignment of GI: 254780698 and protein with PDBid: 1tvf
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Length = 369
Score = 126 bits (317), Expect = 7e-30
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 22/231 (9%)
Query: 72 DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFT 127
D PAS+TK+MT+Y+ E + +L L+ + ++ + S L +T
Sbjct: 54 DTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWT 113
Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184
+ ++ S+N + + +S + F LM+NKAK IGM+NT + N +G +
Sbjct: 114 IADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRL 173
Query: 185 -----------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NK 229
+ +TTARD AIL + + K P+ +
Sbjct: 174 RSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEG 233
Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
+ DG+KTG + + +N + + I V+MG + +
Sbjct: 234 AKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEK 284