RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] (336 letters) >3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} Length = 344 Score = 168 bits (427), Expect = 1e-42 Identities = 78/244 (31%), Positives = 137/244 (56%), Gaps = 9/244 (3%) Query: 47 ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105 ++ A+ + +++D N +T D+ +YPASLTKMMT Y++ L+ K+H + Sbjct: 6 QITAQ---TYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVT 62 Query: 106 VSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162 + ++A +N SK++L T + +I S ND + A E ISG+ F M Sbjct: 63 IGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETM 122 Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222 + ++ G++NT + GL D NQ ++ARD AI+G + ++ P+ YK +S + F + Sbjct: 123 NKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKI 182 Query: 223 IITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKA 280 N N L +K N+DG+KTG+T +G+N+V S + +++VVMG+PT + R+ ++ Sbjct: 183 KQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVES 242 Query: 281 LELI 284 +L+ Sbjct: 243 KKLL 246 >3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis} Length = 334 Score = 168 bits (426), Expect = 2e-42 Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 14/254 (5%) Query: 45 ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103 A ++ AK S+I+ID + + + + R AS+TK+MT + E + ++ Sbjct: 4 AIDVSAK---SAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK-----MDQT 55 Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163 + VS A S +YL E + + L+ RS ND + A E + GS F +M+ Sbjct: 56 VTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMN 115 Query: 164 NKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220 KA+++GM+NT ++N GL D N +TA D AIL Y K + ++ Sbjct: 116 QKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTK-YAMKLKDYQKISGTKIYKAETM 174 Query: 221 NRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279 + N NKLL ++ G KTGYT+ + +V++ ++AV + P + K Sbjct: 175 ESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHMK 234 Query: 280 ALELITSFLEKKTL 293 + + + Sbjct: 235 MFNYVFEHYQTYLI 248 >1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A Length = 262 Score = 162 bits (410), Expect = 1e-40 Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 28/259 (10%) Query: 47 ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105 + A ++ + D R S TK+MT ++ L+L+ ++ Sbjct: 5 TIAAV---GGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLA---QSNLNLDAKVT 58 Query: 106 VSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE------ 155 + K N S+ +L T Q + L+ S D + A + Sbjct: 59 IQKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARV 118 Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215 K F M+ A +G+ NT + + G+ + +T RD + KN + + Sbjct: 119 KSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKN-STFRTVVKTK 177 Query: 216 KFRYRNRIIT----------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265 + + T N N LL+ G+KTG + + +V + ++ Sbjct: 178 AYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIG 237 Query: 266 VVMGMPTSQERDQKALELI 284 V+ + R+ A +++ Sbjct: 238 TVLASTSIPARESDATKIM 256 >3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A* Length = 352 Score = 159 bits (403), Expect = 7e-40 Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 11/267 (4%) Query: 45 ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103 A + A+ + I++D ++ DE PASLTK+MT Y++ + L++ K+ L Sbjct: 8 APSVDAR---AWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDM 64 Query: 104 IPVSKTA------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157 + V K A A + S ++LK + +I +S ND A ++++GS++ Sbjct: 65 VTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQES 124 Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217 F LM+ AKK+G+ NT ++ GL Q +TARD A+LG L + P+ Y ++F Sbjct: 125 FIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEF 184 Query: 218 RYRNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276 + N L + N+DG+KTG T +G+N+V S D +++VV+G T + R Sbjct: 185 TFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIR 244 Query: 277 DQKALELITSFLEKKTLKHQQTHRKDN 303 ++ +L+T Sbjct: 245 FNESEKLLTWGFRFFETVTPIKPDATF 271 >1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A Length = 363 Score = 150 bits (380), Expect = 3e-37 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 11/267 (4%) Query: 41 MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99 MI ++ A+ S I+ID N ++ + D R PASLTKMMT Y+I + +++ K Sbjct: 8 MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64 Query: 100 LNTQIPVSKTAA------TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153 + + A + S ++LK Q I + +S ND A +F +G Sbjct: 65 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 124 Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213 S+ F LM++ +G++NT ++ GL Q ++ARD A++G L ++ P Y + Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184 Query: 214 IRKFRYRNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272 ++F + N L + N+DGIKTG+T +G+N+V S +++ VMG T Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244 Query: 273 SQERDQKALELITSFLEKKTLKHQQTH 299 + R+ ++ +L+T + Sbjct: 245 FKGREAESKKLLTWGFRFFETVNPLKV 271 >1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A* Length = 265 Score = 149 bits (376), Expect = 1e-36 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 3/235 (1%) Query: 53 KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111 + I +D+ + +T ++ DE S K++ + + + L +I + Sbjct: 18 RVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL 77 Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169 T + A IT S N + + G F + + ++ Sbjct: 78 VDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRL 137 Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229 T A ++ T A A L LL + ++ +R+ + Sbjct: 138 DRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIR 197 Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 + KTG + IV L + VV+ + + + + I Sbjct: 198 SVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQI 252 >1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ... Length = 263 Score = 148 bits (373), Expect = 2e-36 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 3/235 (1%) Query: 53 KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111 + I +D+N + + F+ +E S K++ + + + + L +I S+ Sbjct: 18 RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDL 77 Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169 + T + A IT S N + I G ++ F M + ++ Sbjct: 78 VEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 137 Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229 A +++ T A L LL + + +++ + Sbjct: 138 DRWEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLR 197 Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 K+G I+ +L P VV+ SQ + I Sbjct: 198 SALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQI 252 >1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1 Length = 271 Score = 142 bits (358), Expect = 1e-34 Identities = 36/243 (14%), Positives = 86/243 (35%), Gaps = 4/243 (1%) Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 E +++ + +I+ N ++ +E AS +K+M + + + + + L+ I + Sbjct: 14 EKYSQGRLGVALINTEDNSQITYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITI 73 Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSN 164 K+ T T + A + S N +++ G K +FA +++ Sbjct: 74 KKSDLVAYSPITEKHLTTGMTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSIND 133 Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI-LLRKNFPQYYKYFSIRKFRYRNRI 223 ++ + N + D T+ A L + + + + N Sbjct: 134 VTYRLDRKEPEL-NTAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTT 192 Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283 N K H + G KTG N + + ++ + +V+ ++ + ++ Sbjct: 193 GDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDI 252 Query: 284 ITS 286 I Sbjct: 253 IAK 255 >1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A Length = 276 Score = 140 bits (353), Expect = 5e-34 Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 7/228 (3%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 ++D + G +QDE S K M + + L+ ++PV + + Sbjct: 35 LLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPV 94 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175 T A I S N + + G F + + Sbjct: 95 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPE 154 Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235 + + ++ T A A L ++ Q + + N + Sbjct: 155 LNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGKR 214 Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDD--PIVAVVM---GMPTSQERDQ 278 G KTG N + L P V G + ++R Sbjct: 215 WRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQAGAISYEQRAS 262 >3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A Length = 265 Score = 139 bits (352), Expect = 6e-34 Identities = 35/235 (14%), Positives = 61/235 (25%), Gaps = 11/235 (4%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 V ++ DE S K + + Q+ HL+ I + Sbjct: 21 VPATGTTAAIEYRADERFAFCSTFKAPLVAAVLH--QNPLTHLDKLITYTSDDIRSISPV 78 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177 +T T Q A I S + + G + + +G + Sbjct: 79 AQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADL-GGPGGGTAAFTGYLRSLGDTVSRLD 137 Query: 178 NASGLHDKNQITTARDQ-------AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230 +++ RD +L L+ N K + + RN + Sbjct: 138 AEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRA 197 Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELI 284 KTG N + + P V VM D + E + Sbjct: 198 GFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREAL 252 >3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* Length = 453 Score = 134 bits (337), Expect = 3e-32 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 23/247 (9%) Query: 55 SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113 +S V Q+ D PAS+TK+MT+Y+ E + +L L+ + ++ Sbjct: 72 TSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIM 131 Query: 114 N----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169 + S L +T + ++ S+N + + +S + F LM+NKAK I Sbjct: 132 STLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAI 191 Query: 170 GMQNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIR 215 GM+NT + N +G + + +TTARD AIL + + K P+ + Sbjct: 192 GMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQL 251 Query: 216 KFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271 N L DG+KTG + + +N + + I V+MG Sbjct: 252 APTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAG 311 Query: 272 TSQERDQ 278 + Sbjct: 312 DYKNLGG 318 >2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 1ylw_A 1ylp_A* 1iys_A 2zq8_A* 1we4_A 1bza_A ... Length = 263 Score = 134 bits (337), Expect = 3e-32 Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 2/234 (0%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 + +ID N ++ DE S +K+M + + +++K LN + + Sbjct: 19 RLGVALIDTADNTQVLYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLV 78 Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172 T + A + S N + G A + + + Sbjct: 79 NYNPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLD 138 Query: 173 NTIYK-NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230 T N + D TT R A L L + + + + N + Sbjct: 139 RTEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRA 198 Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 G KTG N + + + + +V Q+ + +++ Sbjct: 199 GLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVL 252 >3cg5_A Beta-lactamase, penicillinase; alpha-beta structure, covalent adduct, antibiotic resistance, hydrolase, lipoprotein, membrane; HET: ISS; 1.70A {Mycobacterium tuberculosis} PDB: 3dwz_A* 2gdn_A Length = 265 Score = 132 bits (334), Expect = 7e-32 Identities = 38/235 (16%), Positives = 62/235 (26%), Gaps = 11/235 (4%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 V ++ DE S K + + Q+ HL+ I + Sbjct: 21 VPATGTTAAIEYRADERFAFCSTFKAPLVAAVLH--QNPLTHLDKLITYTSDDIRSISPV 78 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177 +T T Q A I S + + G + + +G + Sbjct: 79 AQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGG-GTAAFTGYLRSLGDTVSRLD 137 Query: 178 ------NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230 N D+ TT A +L L+ N K + + RN + Sbjct: 138 AEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRA 197 Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELI 284 KTG N + + P V VM D + E + Sbjct: 198 GFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREAL 252 >1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A Length = 271 Score = 132 bits (333), Expect = 1e-31 Identities = 33/245 (13%), Positives = 78/245 (31%), Gaps = 4/245 (1%) Query: 45 ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104 A E+ + V+D + + ++ S K + + + K++ N+ + Sbjct: 14 AIEVSLSARIGVSVLDTQNGEYWDYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTV 73 Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILM 162 + K + + T + A +T S N + + G + F + Sbjct: 74 EIKKADLVTYSPVIEKQVGQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQI 133 Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRN 221 +K ++ N L D TT + A L L + + + N Sbjct: 134 GDKETRLDRIEPDL-NEGKLGDLRDTTTPKAIASTLNKFLFGSALSEMNQKKLESWMVNN 192 Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281 ++ N + + K+G +I + + + V + + +Q ++ Sbjct: 193 QVTGNLLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLAQTQASMEERN 252 Query: 282 ELITS 286 + I Sbjct: 253 DAIVK 257 >3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} Length = 260 Score = 130 bits (327), Expect = 6e-31 Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 8/234 (3%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 ID ++ ++++E S K + + + + L I S+ Sbjct: 20 AIDTGADKEISYRENERFAYTSTFKPLAVGAVLQ--TKSDEELEETITYSEEDLVTYSPI 77 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175 T + A I S N E + G ++ + ++ ++ T Sbjct: 78 TEQHVDEGMTLVEIADAAIRYSDNTAGNLLLEAMGGPDELETILRDIGDETIEMDRYETE 137 Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235 A ++ T L + ++ + + N + Sbjct: 138 LNEAKPGDIRDTSTAKAMATTLQQYVLEDVLDADRREVLTNMLINNTTGDALIRAGVPDG 197 Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDD--PIVAVVM--GMPTSQERDQKALELIT 285 G KTG N + + + D PIV +M + D K +E T Sbjct: 198 WTVGDKTGAGGYGTRNDIGIIWPEGDEEPIVIAIMSSRDEEDADYDDKLIEKAT 251 >3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} Length = 294 Score = 126 bits (318), Expect = 6e-30 Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 5/231 (2%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 +D ++ +E S K + Q + L+T I K A Sbjct: 48 AMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPI 107 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175 T T + A + S N + + + G F + + ++ Sbjct: 108 SEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELE 167 Query: 176 YKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234 N++ D ++ R L L + + + N + + Sbjct: 168 L-NSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPA 226 Query: 235 HNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 G KTG G N + + + + + D+ + +I Sbjct: 227 DWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 277 >1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Length = 369 Score = 126 bits (317), Expect = 7e-30 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 22/231 (9%) Query: 72 DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFT 127 D PAS+TK+MT+Y+ E + +L L+ + ++ + S L +T Sbjct: 54 DTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWT 113 Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184 + ++ S+N + + +S + F LM+NKAK IGM+NT + N +G + Sbjct: 114 IADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRL 173 Query: 185 -----------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NK 229 + +TTARD AIL + + K P+ + Sbjct: 174 RSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEG 233 Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280 + DG+KTG + + +N + + I V+MG + + Sbjct: 234 AKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEK 284 >2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A Length = 265 Score = 124 bits (311), Expect = 4e-29 Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 5/230 (2%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 K +D N+ ++ DE AS K +T+ ++ + Q LN +I ++ Sbjct: 18 KLGIFALDTGTNRTVTYRPDERFAFASTIKALTVGVLLQ--QKSIEDLNQRITYTRDDLV 75 Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN--KAKKIG 170 T T ++ A + S N + I G E L + Sbjct: 76 NYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPE 135 Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230 + ++ T L ++ K + + RN + Sbjct: 136 RFEPELNEVNPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWMKRNTTGDALIRA 195 Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQK 279 KTG N + + DP+V V+ ++ Sbjct: 196 GVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYD 245 >1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A Length = 265 Score = 123 bits (310), Expect = 4e-29 Identities = 31/237 (13%), Positives = 75/237 (31%), Gaps = 6/237 (2%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 + +D + ++ +E S K + + Q +L+LN + + + Sbjct: 18 RIGVYALDTGSGKSFSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLE 77 Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKI 169 + + + A + S N + E G KF + ++ ++ Sbjct: 78 FHSPITTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRL 137 Query: 170 GMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228 N + D+ +T A L L N ++ + + + N Sbjct: 138 DRWELDL-NTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARI 196 Query: 229 KLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 + + G KTG G N + K+ + + + +++ + ++I Sbjct: 197 RASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKEAKHEDKVI 253 >2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1 Length = 262 Score = 123 bits (308), Expect = 8e-29 Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 6/236 (2%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 ++ + + DE S K + + + ++ L+ ++ V A Sbjct: 17 LIGLYAANLQSGRRITHRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALV 76 Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172 N + T + A + RS N + + I G A S ++ + Sbjct: 77 PNSPVTEARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFARSVGDERTRLD 136 Query: 173 NTIY-KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRIITNHNKL 230 N++ D +T A+ + + + N+ + L Sbjct: 137 RWEVELNSAIPGDPRDTSTPAALAVGYRAILAGDALSPPQRGLLEDWMRANQTSSMRAGL 196 Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM-GMPTSQERDQKALELI 284 KTG N D ++ V+M + + LI Sbjct: 197 PE--GWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPLI 250 >1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A Length = 258 Score = 122 bits (306), Expect = 1e-28 Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 8/241 (3%) Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 E +D + F D+ AS +K + I+ E Q LN ++ + Sbjct: 8 EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLE--QVPYNKLNKKVHI 65 Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSN 164 +K L T + I A +T S N + + I G +K + + + Sbjct: 66 NKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGD 125 Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224 K + + S K+ T A L L+ + N+ Sbjct: 126 KVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSG 185 Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFN----IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280 K K+G V + ++ + ++ Sbjct: 186 DTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDK 245 Query: 281 L 281 L Sbjct: 246 L 246 >1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1 Length = 266 Score = 122 bits (306), Expect = 1e-28 Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 7/228 (3%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----Q 113 D + ++ DE S+ K ++ + L L+ +I ++ Sbjct: 22 AYDTGSGRTVAYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGA 81 Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGM 171 + T E+ IT S N + + G +F + ++ ++ Sbjct: 82 PETGKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRLDR 141 Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231 +A + + G L+ + + + N + + Sbjct: 142 WEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFRAG 201 Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQ 278 G KTG R N PIV V+ T Q+ + Sbjct: 202 LPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAAR 249 >3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A* Length = 264 Score = 120 bits (301), Expect = 5e-28 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 3/230 (1%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 +D ++ +E S K + Q + L+T I K A Sbjct: 23 AMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPI 82 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175 T T + A + S N + + + G F + + ++ Sbjct: 83 SEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELE 142 Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235 +A ++ + L L + + + N + + Sbjct: 143 LNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPAD 202 Query: 236 NIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284 G KTG G N + + + + + D+ + +I Sbjct: 203 WAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 252 >1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1 Length = 379 Score = 115 bits (289), Expect = 1e-26 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 22/246 (8%) Query: 55 SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113 +I ++ N ++ K +P AS+TK++T+Y+++E L++ + L+T + +S Sbjct: 16 HAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 75 Query: 114 NPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170 + E +T E+ + A + SAN + A E I+GSEK F +M K + G Sbjct: 76 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 135 Query: 171 MQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216 +Q+ N +GL+ D+ +A D AI+ L K +PQ + Sbjct: 136 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 195 Query: 217 FRYRNRIITNHNK----LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272 + IT+ N + DG+KTG T +G + V + K ++ VV+ Sbjct: 196 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 255 Query: 273 SQERDQ 278 Sbjct: 256 QDNNPY 261 >2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis} Length = 276 Score = 110 bits (276), Expect = 3e-25 Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 14/235 (5%) Query: 55 SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113 + IV D++ Q + G Q+ PAS K++ + + +L LN+ + Sbjct: 21 TWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALD-----ELDLNSTVVADVADTQA 75 Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 + + +K +T Q + L+ S ND + + G + A + + +G + Sbjct: 76 ECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKA-ATLGATS 134 Query: 174 TIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNH 227 T SGL +TA D ++ P + + + + ++I N Sbjct: 135 THATTPSGLDGPGGSGASTAHDLVVI-FRAAMANPVFAQIIAEPSAMFPSDDGEQLIVNQ 193 Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282 ++LL + G KTGYT + V + +V +M + + Sbjct: 194 DELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQ 248 >2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A* Length = 298 Score = 108 bits (271), Expect = 1e-24 Identities = 36/244 (14%), Positives = 73/244 (29%), Gaps = 8/244 (3%) Query: 42 ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101 I +++ D+ AS K L F+ + ++ L Sbjct: 24 IQQLVSRQPNLTAGLYFFNLDSGASLNVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQ 83 Query: 102 TQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160 ++ + A + + Y K + + + +IT S N + + + A Sbjct: 84 ERLTMRPDLIAPEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRL-----GGAA 138 Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220 ++ + ++ G++NT+ N T+ RD A L + + + + R Sbjct: 139 ELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQGEILSPRSRDRLLDIMR 198 Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280 + KTG + VA +M D + Sbjct: 199 RTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMV--KRPYNDPRG 256 Query: 281 LELI 284 ELI Sbjct: 257 SELI 260 >3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp} Length = 290 Score = 108 bits (271), Expect = 2e-24 Identities = 36/245 (14%), Positives = 68/245 (27%), Gaps = 9/245 (3%) Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106 E K ++ + + + S+ K + + I +Y + L+ +IP+ Sbjct: 32 ENKYDGKIGIYTLNTDDKTNIKYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPI 91 Query: 107 SKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164 ++ + T Q A I + S + G + + Sbjct: 92 NQDDIGKLGYAPITAKNVGKTLTISQLNYAAILSD-SPASNILVRELGGLQNLNKFIKKL 150 Query: 165 --KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRN 221 I + N+ TT + L K+ K+ N Sbjct: 151 GDNDTIITADEPEINYTQPHSNINK-TTPKAITKDIYKLAFGNILDKKHKDIFIKYLQDN 209 Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKD-DPIVAVVMGMPTSQERDQK 279 N I G KTG N V + K+ PI ++ + + Sbjct: 210 NTGANRIAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTNPNDKNAPS 269 Query: 280 ALELI 284 E+I Sbjct: 270 NEEII 274 >3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583} Length = 282 Score = 108 bits (270), Expect = 2e-24 Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 17/234 (7%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 +D+ + Y AS K+ ++ + + S + IP + Sbjct: 51 TVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDY 110 Query: 113 QNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171 + + + + + IT S N + + G K + K Sbjct: 111 EEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDAKAKREMYQRYLHKTPS 170 Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231 + ++ D ++ L Y +I + + + + Sbjct: 171 ------------IEEPQFSSEDALVILQKLYTEKATKPDYQAI--YDSMKQSVFHERMET 216 Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285 K G + + L P + + + +T Sbjct: 217 PTTQGKVAHKIGSYDEF-IHDMGIL-ETPHPFALAIFTKGPDNAKSAAFIASVT 268 >1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1 Length = 282 Score = 108 bits (269), Expect = 3e-24 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 12/233 (5%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114 V + + E S+ K+ ++ + KL LN + V++ QN Sbjct: 24 VWGPDDLEPLLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWA 83 Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173 K Y ++ +Q + ++ S N E + G + S K+ + Sbjct: 84 PIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVA 143 Query: 174 TIYK-NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231 + +A T+ + A IL +K + K+ K L Sbjct: 144 NEAQMHADDQVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGL 203 Query: 232 NKMHNIDGIKTGYTRNSGF-----NIVTSLRYKDD-PIVAVVMGMPTSQERDQ 278 + KTG ++ N + + D P++ V +++ Sbjct: 204 LPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDSAESSRT 256 >2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} Length = 287 Score = 107 bits (268), Expect = 3e-24 Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 9/244 (3%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PS 116 ++D + G + + S K ++FE + S + ++ + P+ Sbjct: 43 IVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPA 102 Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNT 174 + T + A + S N + I G ++ + + ++ + Sbjct: 103 TERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEP 162 Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234 + + ++ T + +L +I ++ N+ + Sbjct: 163 EMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPK 222 Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQ---KALELITSFL 288 + G KTG N G N + + ++ V ++ ERD+ ++IT + Sbjct: 223 DWVVGEKTGTCANGGRNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLI 282 Query: 289 EKKT 292 Sbjct: 283 LSTD 286 >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Length = 307 Score = 106 bits (266), Expect = 5e-24 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 5/215 (2%) Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117 +D N+ ++ DE AS K +T+ ++ + Q LN +I ++ Sbjct: 65 ALDTGTNRTVTYRPDERFAFASTIKALTVGVLLQ--QKSIEDLNQRITYTRDDLVNYNPI 122 Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-- 175 T T ++ A + S N + I G E L + + Sbjct: 123 TEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPERFEPE 182 Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235 + ++ T L ++ K + + RN + Sbjct: 183 LNEVNPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWMKRNTTGDALIRAGVPEG 242 Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMG 269 KTG N + + DP+V V+ Sbjct: 243 WEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLS 277 >1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1 Length = 266 Score = 89.4 bits (221), Expect = 9e-19 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 14/204 (6%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 +D + F D+ AS +K + I+ E + K LN ++ ++K Sbjct: 59 HIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIV 116 Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172 L T + I A +T S N + + I G +K + + K++G + Sbjct: 117 AYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKK-----VKQRLKELGDK 171 Query: 173 NTIYKNASGLHDKNQITTARDQ----AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228 T + + +D A L + + + + + Sbjct: 172 VTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGD 231 Query: 229 KLLNKMHNID---GIKTGYTRNSG 249 L+ D K+G Sbjct: 232 TLIKDGVPKDYKVADKSGQAITYA 255 >2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi} Length = 318 Score = 51.8 bits (123), Expect = 2e-07 Identities = 35/279 (12%), Positives = 68/279 (24%), Gaps = 48/279 (17%) Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 S +V D+ + G D ASL K+ E ++ ++ QI V+ T Sbjct: 21 TGSFLVRDLYTGEELGIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRIT 80 Query: 113 QN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----KKFAILMSNK 165 + + + + S S A E ++ +++ Sbjct: 81 TPGPTGLSRFRHPARVAVDDLLYLSTSVSDGTASDALFEITPPAQVEQMVREWGFRDLTV 140 Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225 + + D + A + + R ++ Sbjct: 141 RHSMRELSETPAERFESADAHLAHALAISAGTSGRGHRVPQLDVARANTGTARAFVDLLE 200 Query: 226 ----------------------NHNKLLNKMHN------------IDGI----KTGYTRN 247 +L M D KTG T Sbjct: 201 ALWAPVLTGPRPGRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWSSKTG-TLL 259 Query: 248 SGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELI 284 + + V + + D VAV+ + A L+ Sbjct: 260 NLRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALM 298 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.6 bits (118), Expect = 1e-06 Identities = 64/408 (15%), Positives = 122/408 (29%), Gaps = 153/408 (37%) Query: 15 LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGF 69 LT +GS+ L + +AS+L + P+ + GF Sbjct: 9 LTLSHGSLEHV---------LLVPTASFFIASQLQEQFNKILPEPT-----------EGF 48 Query: 70 KQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYF 126 D EP PA L + ++L ++++ V + Q L L E F Sbjct: 49 AADDEPTTPAEL--------VGKFLG----YVSSL--VEPSKVGQFDQVLNLCLTE---F 91 Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186 E L ND+ + + ++ K K++ ++N Y A + + Sbjct: 92 --ENCYLE-----GNDIHALAAKLLQENDTTLV-----KTKEL-IKN--YITARIMAKRP 136 Query: 187 QITTARDQAILGILLRKNFPQYY---------KYFSIRKFR-----YR---NRIITNHNK 229 + A+ + N YF + R Y +I + Sbjct: 137 -FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAE 193 Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDD--------------PIVAV-------- 266 L+++ + +T+ G NI+ L + P++ V Sbjct: 194 TLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251 Query: 267 ---VMGMPTSQERDQKALE--------LIT-----------SFLE--KKTLK-------- 294 ++G + R L+ L+T SF +K + Sbjct: 252 TAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309 Query: 295 -HQQTHRKDNLSSTSLKKSL---------M--IKKLKRTYSQFKKIDA 330 ++ +L + L+ SL M I L + Q ++ Sbjct: 310 CYEAYPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVNK 355 Score = 42.2 bits (99), Expect = 2e-04 Identities = 59/394 (14%), Positives = 102/394 (25%), Gaps = 178/394 (45%) Query: 14 FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGF 69 + TY + I+ + L SEL K + +++ + Sbjct: 177 YQTYHV---LVGDLIKFSAETL----------SELIRTTLDAEKVFTQGLNI----LEWL 219 Query: 70 KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----------KTAAT-----QN 114 + P +YL S IP+S T Sbjct: 220 ENPSNT-PDK-----------DYLLS--------IPISCPLIGVIQLAHYVVTAKLLGFT 259 Query: 115 PSKLYLKEKTYF--TT--EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170 P +L ++Y T QG+ +T A + ++ F K +L IG Sbjct: 260 PGEL----RSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVLFF-----IG 307 Query: 171 ------------------------------M-----------QNTIYK-NASGLHDKNQI 188 M Q+ + K N+ L Q+ Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQV 366 Query: 189 TTA----RDQAI----------LGILLRKN----------FPQYYKYFSIRKFRYRNRI- 223 + + L + LRK P FS RK ++ NR Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-----FSERKLKFSNRFL 421 Query: 224 -ITN--HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-----TSQE 275 + + H+ LL ++ I L + A + +P + Sbjct: 422 PVASPFHSHLLVPASDL--------------INKDLVKNNVSFNAKDIQIPVYDTFDGSD 467 Query: 276 -RDQKA------LELITS---FLEKKTLKHQQTH 299 R ++ I E T + + TH Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWE-TTTQFKATH 500 Score = 28.8 bits (64), Expect = 1.7 Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 45/115 (39%) Query: 254 TSLRYKDDPIV------AVVMGMPT------SQERDQ--KAL-----------------E 282 S R P+ V+ +PT SQ ++Q K L E Sbjct: 4 YSTR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59 Query: 283 LITSFLE---KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334 L+ FL + L L + + + Y + I A A Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQ-----VLN--LCLTEFENCYLEGNDIHALAAK 107 >3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* Length = 453 Score = 32.9 bits (74), Expect = 0.11 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Query: 41 MISMASELHAKPKYSSI---VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93 MI+++ P+ S+ ++N+NQ + + PAS K+ T L Sbjct: 1 MINVSDLTQKLPEGSNAGVIAKNINQNQIIADYNGSTFMLPASTQKVFTAVAAKLAL 57 >3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Length = 280 Score = 32.8 bits (74), Expect = 0.12 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 78 ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112 AS+TK + ++ ++L+T P +T Sbjct: 39 ASVTKPLVARAAQVAVEEGVVNLDT--PAGPPGST 71 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.15 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%) Query: 289 EKKTLKHQQTHRK---DNLSSTSLK-KSLM 314 EK+ LK Q K D+ S+ +L K+ M Sbjct: 18 EKQALKKLQASLKLYADD-SAPALAIKATM 46 Score = 27.3 bits (59), Expect = 5.7 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 18/44 (40%) Query: 70 KQDEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112 KQ +L K LQ S KL+ + P AT Sbjct: 19 KQ-------ALKK----------LQASLKLYADDSAPALAIKAT 45 >2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* Length = 458 Score = 30.3 bits (67), Expect = 0.60 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 46 SELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93 ++L A + +V V + + + PAS K++T L Sbjct: 9 TQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQL 57 >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Score = 29.2 bits (65), Expect = 1.4 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 1/62 (1%) Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245 I D GI + KN P + I N + N HN DG + Sbjct: 103 MYIHDVEDSTFKGINI-KNTPVQAISVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISES 161 Query: 246 RN 247 Sbjct: 162 TG 163 >1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* Length = 489 Score = 29.1 bits (64), Expect = 1.7 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 57 IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93 +V+D + + E PAS K+ T E L Sbjct: 26 VVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVL 63 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* Length = 462 Score = 27.6 bits (60), Expect = 3.8 Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%) Query: 57 IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93 V + D PAS K++T L Sbjct: 29 TVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVL 66 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.131 0.356 Gapped Lambda K H 0.267 0.0491 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,568,650 Number of extensions: 113624 Number of successful extensions: 370 Number of sequences better than 10.0: 1 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 52 Length of query: 336 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 243 Effective length of database: 3,438,538 Effective search space: 835564734 Effective search space used: 835564734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.3 bits)