BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine
carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
         (336 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/336 (100%), Positives = 336/336 (100%)

Query: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60
           MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID
Sbjct: 1   MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60

Query: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120
           VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL
Sbjct: 61  VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120

Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180
           KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS
Sbjct: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180

Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240
           GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI
Sbjct: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240

Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300
           KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR
Sbjct: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300

Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336
           KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ
Sbjct: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score =  157 bits (397), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 141/267 (52%), Gaps = 12/267 (4%)

Query: 36  FLSIIMISMAS---------ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMT 85
           FL II ++M S         E +  P Y+  ++D N   +      D P  PASLTK+MT
Sbjct: 4   FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61

Query: 86  LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145
            Y++F +L+ KK  L T I +SK A+   PS    K+ +  T +  +  LI +SAND++ 
Sbjct: 62  AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121

Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205
           A  E +  +EKKF   M+N +K +G+  T + NA G+      TTARD AIL   ++ +F
Sbjct: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181

Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
           PQY  YF I+    + +   N N  +      DG+KTG+T  SGFNIV S    D  ++A
Sbjct: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241

Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292
           V++G      R++ +  L++     KT
Sbjct: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268


>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 294

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNAS 180
           S + F I++ NKA ++G + T   NA+
Sbjct: 232 SSRVFWIILENKASEVGARITAMDNAT 258


>gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 237

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322
           G+P+  + + K ++ I   L  +T  H QT   D L S +++ +L+  K  R++
Sbjct: 4   GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLS-AIRYALLGGKKIRSF 56


>gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 338

 Score = 23.5 bits (49), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184
           +FTT + + ALI +       +FG+    S+KK A L+    +K  +  T  K+A  LH 
Sbjct: 237 FFTTVRQLGALIEQC-----YSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291

Query: 185 K 185
           +
Sbjct: 292 R 292


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 23.1 bits (48), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261
           LL K+H  +GI T  T  +G++++  L +  D
Sbjct: 154 LLRKLHRANGIDTNIT--TGYHVIEFLLWGQD 183


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.131    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,020
Number of Sequences: 1233
Number of extensions: 7939
Number of successful extensions: 26
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 10
length of query: 336
length of database: 328,796
effective HSP length: 74
effective length of query: 262
effective length of database: 237,554
effective search space: 62239148
effective search space used: 62239148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)