BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] (336 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/336 (100%), Positives = 336/336 (100%) Query: 1 MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60 MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID Sbjct: 1 MLQQKIQSSAKKTFLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKPKYSSIVID 60 Query: 61 VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120 VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL Sbjct: 61 VNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYL 120 Query: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS Sbjct: 121 KEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNAS 180 Query: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI Sbjct: 181 GLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGI 240 Query: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR Sbjct: 241 KTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFLEKKTLKHQQTHR 300 Query: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ Sbjct: 301 KDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHSTQ 336 >gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 157 bits (397), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 141/267 (52%), Gaps = 12/267 (4%) Query: 36 FLSIIMISMAS---------ELHAKPKYSSIVIDVNKNQMTGFK-QDEPRYPASLTKMMT 85 FL II ++M S E + P Y+ ++D N + D P PASLTK+MT Sbjct: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYPDHPWNPASLTKLMT 61 Query: 86 LYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVST 145 Y++F +L+ KK L T I +SK A+ PS K+ + T + + LI +SAND++ Sbjct: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121 Query: 146 AFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNF 205 A E + +EKKF M+N +K +G+ T + NA G+ TTARD AIL ++ +F Sbjct: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181 Query: 206 PQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265 PQY YF I+ + + N N + DG+KTG+T SGFNIV S D ++A Sbjct: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241 Query: 266 VVMGMPTSQERDQKALELITSFLEKKT 292 V++G R++ + L++ KT Sbjct: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268 >gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNAS 180 S + F I++ NKA ++G + T NA+ Sbjct: 232 SSRVFWIILENKASEVGARITAMDNAT 258 >gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 237 Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 269 GMPTSQERDQKALELITSFLEKKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTY 322 G+P+ + + K ++ I L +T H QT D L S +++ +L+ K R++ Sbjct: 4 GLPSKLQENSKRIDTILDDLLLQTASHMQTQHNDRLLS-AIRYALLGGKKIRSF 56 >gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 338 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184 +FTT + + ALI + +FG+ S+KK A L+ +K + T K+A LH Sbjct: 237 FFTTVRQLGALIEQC-----YSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291 Query: 185 K 185 + Sbjct: 292 R 292 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 23.1 bits (48), Expect = 7.9, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDD 261 LL K+H +GI T T +G++++ L + D Sbjct: 154 LLRKLHRANGIDTNIT--TGYHVIEFLLWGQD 183 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.131 0.356 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,020 Number of Sequences: 1233 Number of extensions: 7939 Number of successful extensions: 26 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 10 length of query: 336 length of database: 328,796 effective HSP length: 74 effective length of query: 262 effective length of database: 237,554 effective search space: 62239148 effective search space used: 62239148 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)