Query         gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 14:30:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780699.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2bpt_A Importin beta-1 subuni  55.3      15 0.00045   17.9   3.7   34    2-35     51-88  (91)
  2 >2z5b_A Protein YPL144W, DMP1;  42.1      15 0.00043   17.9   1.9   22   70-91     27-48  (151)
  3 >3e2o_A CCP, cytochrome C pero  24.7      31 0.00093   16.0   1.2   17    2-18     11-27  (51)
  4 >2r6f_A Excinuclease ABC subun  20.3      53  0.0016   14.6   1.7   18   22-39     54-71  (71)
  5 >1mwv_A Bpkatg, catalase-perox  20.0      44  0.0013   15.0   1.2   17    2-18     55-71  (110)
  6 >2cca_A Peroxidase/catalase T;  18.4      51  0.0015   14.7   1.2   17    2-18     55-71  (111)
  7 >1itk_A Catalase-peroxidase; h  17.1      56  0.0017   14.4   1.2   17    2-18     56-72  (113)
  8 >2c0n_A A197; thermophilic pro  12.0      38  0.0011   15.4  -0.8   20   53-72    146-165 (203)
  9 >1cmb_A Met APO-repressor; DNA  11.8      78  0.0023   13.6   0.8   14   76-89     18-31  (75)
 10 >3fwh_A Haloalkane dehalogenas  11.5      60  0.0018   14.3   0.1   13    2-14     26-38  (75)

No 1  
>>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} (A:771-861)
Probab=55.32  E-value=15  Score=17.86  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=17.0

Q ss_pred             CCCHHHHHHHHHHCC--CC--CHHHHHHHHHHHHHHHH
Q ss_conf             601489999975000--20--01688999988999987
Q gi|254780699|r    2 LFDNQFIENILKEDR--ED--NNIKSLAQLQRIAIRTV   35 (97)
Q Consensus         2 lfdnqfienilkedr--ed--nnikslaqlqriairtv   35 (97)
                      +|++.|+...|+|-|  .+  ...|.+|.--|-.|+..
T Consensus        51 ~~~~~~v~~~l~e~rss~~~~~~tk~tA~WA~~~ikr~   88 (91)
T 2bpt_A           51 FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ   88 (91)
T ss_dssp             GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             87128999999999818542499999999999999887


No 2  
>>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A (A:)
Probab=42.11  E-value=15  Score=17.93  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=17.2

Q ss_pred             EEEEEEECCCCCCEEEEEEECC
Q ss_conf             7888870346521068996020
Q gi|254780699|r   70 YLNLHIASQSKKIPVSIYIGNI   91 (97)
Q Consensus        70 ylnlhiasqskkipvsiyigni   91 (97)
                      -..+-+.++++|+|+||-||--
T Consensus        27 ~~T~Pv~~~~~K~PISi~i~~~   48 (151)
T 2z5b_A           27 IATLPADDRSKKIPISLVVGFK   48 (151)
T ss_dssp             EEEEESSCSSSSSCEEEEEEEC
T ss_pred             EEECCCCCCCCCCCEEEEEECC
T ss_conf             9975667678878759998415


No 3  
>>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2v23_A* 1ebe_A* 1mkr_A* 1mk8_A* 1mkq_A* 1ml2_A* 1cca_A* 2bcn_A* ... (A:187-237)
Probab=24.65  E-value=31  Score=15.95  Aligned_cols=17  Identities=41%  Similarity=0.649  Sum_probs=13.9

Q ss_pred             CCCHHHHHHHHHHCCCC
Q ss_conf             60148999997500020
Q gi|254780699|r    2 LFDNQFIENILKEDRED   18 (97)
Q Consensus         2 lfdnqfienilkedred   18 (97)
                      -|||+|.+++|+++=+-
T Consensus        11 ~f~N~yf~~Ll~~eW~~   27 (51)
T 3e2o_A           11 VFTNEFYLNLLNEDWKL   27 (51)
T ss_dssp             SCSSHHHHHHHHSCEEE
T ss_pred             HHHHHHHHHHHCCCCCC
T ss_conf             45678899875156766


No 4  
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:793-863)
Probab=20.29  E-value=53  Score=14.61  Aligned_cols=18  Identities=28%  Similarity=0.296  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             889999889999876411
Q gi|254780699|r   22 KSLAQLQRIAIRTVLANR   39 (97)
Q Consensus        22 kslaqlqriairtvlanr   39 (97)
                      -|=.|.||+||-..|+.|
T Consensus        54 LSGGq~QRVaIArAL~~k   71 (71)
T 2r6f_A           54 LSGGEAQRVKLAAELHRR   71 (71)
T ss_dssp             CCHHHHHHHHHHHHHSSC
T ss_pred             CCHHHHHHHHHHHHHHHC
T ss_conf             898999999999999738


No 5  
>>1mwv_A Bpkatg, catalase-peroxidase protein KATG; tuberculosis, heme modification, oxidoreductase; HET: HEM; 1.70A {Burkholderia pseudomallei} (A:248-357)
Probab=20.04  E-value=44  Score=15.05  Aligned_cols=17  Identities=24%  Similarity=0.423  Sum_probs=14.1

Q ss_pred             CCCHHHHHHHHHHCCCC
Q ss_conf             60148999997500020
Q gi|254780699|r    2 LFDNQFIENILKEDRED   18 (97)
Q Consensus         2 lfdnqfienilkedred   18 (97)
                      -|||+|.++++.+|-|-
T Consensus        55 ~fdN~YF~~L~~~eWel   71 (110)
T 1mwv_A           55 QWSHNFFENLFGYEWEL   71 (110)
T ss_dssp             SCCSHHHHHHHHSCEEE
T ss_pred             CEEHHHHHHHHCCCCEE
T ss_conf             00379987552477567


No 6  
>>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} (A:273-383)
Probab=18.42  E-value=51  Score=14.71  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=14.0

Q ss_pred             CCCHHHHHHHHHHCCCC
Q ss_conf             60148999997500020
Q gi|254780699|r    2 LFDNQFIENILKEDRED   18 (97)
Q Consensus         2 lfdnqfienilkedred   18 (97)
                      .|||+|.++++.++-|-
T Consensus        55 ~fdn~Yf~~L~~~~W~l   71 (111)
T 2cca_A           55 KWDNSFLEILYGYEWEL   71 (111)
T ss_dssp             SCSSHHHHHHHHSCEEE
T ss_pred             CCCHHHHHHCCCCCCEE
T ss_conf             10008887404555152


No 7  
>>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} (A:262-374)
Probab=17.15  E-value=56  Score=14.42  Aligned_cols=17  Identities=29%  Similarity=0.485  Sum_probs=14.0

Q ss_pred             CCCHHHHHHHHHHCCCC
Q ss_conf             60148999997500020
Q gi|254780699|r    2 LFDNQFIENILKEDRED   18 (97)
Q Consensus         2 lfdnqfienilkedred   18 (97)
                      -|||+|.++++.++-+-
T Consensus        56 ~fdN~yf~~L~~~~W~l   72 (113)
T 1itk_A           56 EWDMGYINNLLDYEWEP   72 (113)
T ss_dssp             SCSSHHHHHHHHSCEEE
T ss_pred             CCCCHHHHHHHHCCCEE
T ss_conf             66668998876457565


No 8  
>>2c0n_A A197; thermophilic protein, thermophilic virus, STIV; 1.86A {Sulfolobus turreted icosahedral virus} (A:)
Probab=12.04  E-value=38  Score=15.45  Aligned_cols=20  Identities=40%  Similarity=0.660  Sum_probs=15.5

Q ss_pred             HHHHHCCCHHCCCCCCEEEE
Q ss_conf             99863431000368823788
Q gi|254780699|r   53 YWIAHSSRAWRTSKPRTYLN   72 (97)
Q Consensus        53 ywiahssrawrtskprtyln   72 (97)
                      -||....--+.|.|||||.-
T Consensus       146 hwigedvyffsthkprtyal  165 (203)
T 2c0n_A          146 HWIGEDVYFFSTHKPRTYAL  165 (203)
T ss_dssp             --CCHHHHHHHHHCCCEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCCC
T ss_conf             25575388987657648742


No 9  
>>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} (A:1-75)
Probab=11.83  E-value=78  Score=13.57  Aligned_cols=14  Identities=50%  Similarity=0.517  Sum_probs=8.8

Q ss_pred             ECCCCCCEEEEEEE
Q ss_conf             03465210689960
Q gi|254780699|r   76 ASQSKKIPVSIYIG   89 (97)
Q Consensus        76 asqskkipvsiyig   89 (97)
                      ..|.|||.|||-+.
T Consensus        18 seqvkkitvsip~k   31 (75)
T 1cmb_A           18 SEQVKKITVSIPLK   31 (75)
T ss_dssp             ECCEEEEEEEEEHH
T ss_pred             HHHHHEEEEEEEHH
T ss_conf             44450346761089


No 10 
>>3fwh_A Haloalkane dehalogenase; alpha/beta hydrolase core, helical CAP domain, catalytic triad (Asp106, His272, Glu130), mutant, I135F, C176Y; 1.22A {Rhodococcus SP} PDB: 3fbw_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A (A:138-212)
Probab=11.54  E-value=60  Score=14.26  Aligned_cols=13  Identities=38%  Similarity=0.554  Sum_probs=9.1

Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             6014899999750
Q gi|254780699|r    2 LFDNQFIENILKE   14 (97)
Q Consensus         2 lfdnqfienilke   14 (97)
                      |=+|.|||.+|-.
T Consensus        26 le~N~FvE~~LP~   38 (75)
T 3fwh_A           26 IDQNAFIEGALPK   38 (75)
T ss_dssp             TTSCHHHHTHHHH
T ss_pred             HHHHHHHHHCCHH
T ss_conf             4356665420201


Done!