Query gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 97 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 14:30:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780699.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2bpt_A Importin beta-1 subuni 55.3 15 0.00045 17.9 3.7 34 2-35 51-88 (91) 2 >2z5b_A Protein YPL144W, DMP1; 42.1 15 0.00043 17.9 1.9 22 70-91 27-48 (151) 3 >3e2o_A CCP, cytochrome C pero 24.7 31 0.00093 16.0 1.2 17 2-18 11-27 (51) 4 >2r6f_A Excinuclease ABC subun 20.3 53 0.0016 14.6 1.7 18 22-39 54-71 (71) 5 >1mwv_A Bpkatg, catalase-perox 20.0 44 0.0013 15.0 1.2 17 2-18 55-71 (110) 6 >2cca_A Peroxidase/catalase T; 18.4 51 0.0015 14.7 1.2 17 2-18 55-71 (111) 7 >1itk_A Catalase-peroxidase; h 17.1 56 0.0017 14.4 1.2 17 2-18 56-72 (113) 8 >2c0n_A A197; thermophilic pro 12.0 38 0.0011 15.4 -0.8 20 53-72 146-165 (203) 9 >1cmb_A Met APO-repressor; DNA 11.8 78 0.0023 13.6 0.8 14 76-89 18-31 (75) 10 >3fwh_A Haloalkane dehalogenas 11.5 60 0.0018 14.3 0.1 13 2-14 26-38 (75) No 1 >>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} (A:771-861) Probab=55.32 E-value=15 Score=17.86 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=17.0 Q ss_pred CCCHHHHHHHHHHCC--CC--CHHHHHHHHHHHHHHHH Q ss_conf 601489999975000--20--01688999988999987 Q gi|254780699|r 2 LFDNQFIENILKEDR--ED--NNIKSLAQLQRIAIRTV 35 (97) Q Consensus 2 lfdnqfienilkedr--ed--nnikslaqlqriairtv 35 (97) +|++.|+...|+|-| .+ ...|.+|.--|-.|+.. T Consensus 51 ~~~~~~v~~~l~e~rss~~~~~~tk~tA~WA~~~ikr~ 88 (91) T 2bpt_A 51 FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 88 (91) T ss_dssp GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 87128999999999818542499999999999999887 No 2 >>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A (A:) Probab=42.11 E-value=15 Score=17.93 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.2 Q ss_pred EEEEEEECCCCCCEEEEEEECC Q ss_conf 7888870346521068996020 Q gi|254780699|r 70 YLNLHIASQSKKIPVSIYIGNI 91 (97) Q Consensus 70 ylnlhiasqskkipvsiyigni 91 (97) -..+-+.++++|+|+||-||-- T Consensus 27 ~~T~Pv~~~~~K~PISi~i~~~ 48 (151) T 2z5b_A 27 IATLPADDRSKKIPISLVVGFK 48 (151) T ss_dssp EEEEESSCSSSSSCEEEEEEEC T ss_pred EEECCCCCCCCCCCEEEEEECC T ss_conf 9975667678878759998415 No 3 >>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2v23_A* 1ebe_A* 1mkr_A* 1mk8_A* 1mkq_A* 1ml2_A* 1cca_A* 2bcn_A* ... (A:187-237) Probab=24.65 E-value=31 Score=15.95 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=13.9 Q ss_pred CCCHHHHHHHHHHCCCC Q ss_conf 60148999997500020 Q gi|254780699|r 2 LFDNQFIENILKEDRED 18 (97) Q Consensus 2 lfdnqfienilkedred 18 (97) -|||+|.+++|+++=+- T Consensus 11 ~f~N~yf~~Ll~~eW~~ 27 (51) T 3e2o_A 11 VFTNEFYLNLLNEDWKL 27 (51) T ss_dssp SCSSHHHHHHHHSCEEE T ss_pred HHHHHHHHHHHCCCCCC T ss_conf 45678899875156766 No 4 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:793-863) Probab=20.29 E-value=53 Score=14.61 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 889999889999876411 Q gi|254780699|r 22 KSLAQLQRIAIRTVLANR 39 (97) Q Consensus 22 kslaqlqriairtvlanr 39 (97) -|=.|.||+||-..|+.| T Consensus 54 LSGGq~QRVaIArAL~~k 71 (71) T 2r6f_A 54 LSGGEAQRVKLAAELHRR 71 (71) T ss_dssp CCHHHHHHHHHHHHHSSC T ss_pred CCHHHHHHHHHHHHHHHC T ss_conf 898999999999999738 No 5 >>1mwv_A Bpkatg, catalase-peroxidase protein KATG; tuberculosis, heme modification, oxidoreductase; HET: HEM; 1.70A {Burkholderia pseudomallei} (A:248-357) Probab=20.04 E-value=44 Score=15.05 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.1 Q ss_pred CCCHHHHHHHHHHCCCC Q ss_conf 60148999997500020 Q gi|254780699|r 2 LFDNQFIENILKEDRED 18 (97) Q Consensus 2 lfdnqfienilkedred 18 (97) -|||+|.++++.+|-|- T Consensus 55 ~fdN~YF~~L~~~eWel 71 (110) T 1mwv_A 55 QWSHNFFENLFGYEWEL 71 (110) T ss_dssp SCCSHHHHHHHHSCEEE T ss_pred CEEHHHHHHHHCCCCEE T ss_conf 00379987552477567 No 6 >>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} (A:273-383) Probab=18.42 E-value=51 Score=14.71 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.0 Q ss_pred CCCHHHHHHHHHHCCCC Q ss_conf 60148999997500020 Q gi|254780699|r 2 LFDNQFIENILKEDRED 18 (97) Q Consensus 2 lfdnqfienilkedred 18 (97) .|||+|.++++.++-|- T Consensus 55 ~fdn~Yf~~L~~~~W~l 71 (111) T 2cca_A 55 KWDNSFLEILYGYEWEL 71 (111) T ss_dssp SCSSHHHHHHHHSCEEE T ss_pred CCCHHHHHHCCCCCCEE T ss_conf 10008887404555152 No 7 >>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} (A:262-374) Probab=17.15 E-value=56 Score=14.42 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0 Q ss_pred CCCHHHHHHHHHHCCCC Q ss_conf 60148999997500020 Q gi|254780699|r 2 LFDNQFIENILKEDRED 18 (97) Q Consensus 2 lfdnqfienilkedred 18 (97) -|||+|.++++.++-+- T Consensus 56 ~fdN~yf~~L~~~~W~l 72 (113) T 1itk_A 56 EWDMGYINNLLDYEWEP 72 (113) T ss_dssp SCSSHHHHHHHHSCEEE T ss_pred CCCCHHHHHHHHCCCEE T ss_conf 66668998876457565 No 8 >>2c0n_A A197; thermophilic protein, thermophilic virus, STIV; 1.86A {Sulfolobus turreted icosahedral virus} (A:) Probab=12.04 E-value=38 Score=15.45 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=15.5 Q ss_pred HHHHHCCCHHCCCCCCEEEE Q ss_conf 99863431000368823788 Q gi|254780699|r 53 YWIAHSSRAWRTSKPRTYLN 72 (97) Q Consensus 53 ywiahssrawrtskprtyln 72 (97) -||....--+.|.|||||.- T Consensus 146 hwigedvyffsthkprtyal 165 (203) T 2c0n_A 146 HWIGEDVYFFSTHKPRTYAL 165 (203) T ss_dssp --CCHHHHHHHHHCCCEEEE T ss_pred CCCCCCHHHHHHHHHCCCCC T ss_conf 25575388987657648742 No 9 >>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} (A:1-75) Probab=11.83 E-value=78 Score=13.57 Aligned_cols=14 Identities=50% Similarity=0.517 Sum_probs=8.8 Q ss_pred ECCCCCCEEEEEEE Q ss_conf 03465210689960 Q gi|254780699|r 76 ASQSKKIPVSIYIG 89 (97) Q Consensus 76 asqskkipvsiyig 89 (97) ..|.|||.|||-+. T Consensus 18 seqvkkitvsip~k 31 (75) T 1cmb_A 18 SEQVKKITVSIPLK 31 (75) T ss_dssp ECCEEEEEEEEEHH T ss_pred HHHHHEEEEEEEHH T ss_conf 44450346761089 No 10 >>3fwh_A Haloalkane dehalogenase; alpha/beta hydrolase core, helical CAP domain, catalytic triad (Asp106, His272, Glu130), mutant, I135F, C176Y; 1.22A {Rhodococcus SP} PDB: 3fbw_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A (A:138-212) Probab=11.54 E-value=60 Score=14.26 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=9.1 Q ss_pred CCCHHHHHHHHHH Q ss_conf 6014899999750 Q gi|254780699|r 2 LFDNQFIENILKE 14 (97) Q Consensus 2 lfdnqfienilke 14 (97) |=+|.|||.+|-. T Consensus 26 le~N~FvE~~LP~ 38 (75) T 3fwh_A 26 IDQNAFIEGALPK 38 (75) T ss_dssp TTSCHHHHTHHHH T ss_pred HHHHHHHHHCCHH T ss_conf 4356665420201 Done!