Query         gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 97
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 07:43:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780699.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1cmca_ a.43.1.5 (A:) Met repr  10.4      37  0.0027   13.2   0.7   12   77-88     19-30  (104)
  2 d1ct5a_ c.1.6.2 (A:) "Hypothet   9.8      36  0.0026   13.3   0.5   10   86-95     87-96  (244)
  3 d1oafa_ a.93.1.1 (A:) Ascorbat   9.1      53  0.0039   12.2   1.4   16    2-17    185-200 (250)
  4 d2axte1 f.23.38.1 (E:3-84) Cyt   6.7      69   0.005   11.6   0.8   25   48-72     27-55  (82)
  5 d1jqga2 d.58.3.1 (A:4P-100P) P   4.7      92  0.0067   10.8   2.0   35   59-93     32-76  (92)
  6 d1o1ya_ c.23.16.1 (A:) Hypothe   4.3      98  0.0072   10.6   3.2   15   41-55    214-228 (230)
  7 d1ntca_ a.4.1.12 (A:) DNA-bind   4.0   1E+02  0.0075   10.5   4.0   39    6-44     30-68  (91)
  8 d3dhwc1 c.37.1.12 (C:1-240) Me   3.9   1E+02  0.0076   10.5   2.0   20   22-41    141-160 (240)
  9 d1rq6a_ a.4.15.1 (A:) ribosoma   3.9 1.1E+02  0.0077   10.5   1.1   14   39-52      5-18  (62)
 10 d1u83a_ c.1.27.1 (A:) (2r)-pho   3.9   1E+02  0.0076   10.5   0.2    8   63-70      9-16  (249)

No 1  
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=10.42  E-value=37  Score=13.19  Aligned_cols=12  Identities=58%  Similarity=0.603  Sum_probs=6.3

Q ss_pred             CCCCCCEEEEEE
Q ss_conf             346521068996
Q gi|254780699|r   77 SQSKKIPVSIYI   88 (97)
Q Consensus        77 sqskkipvsiyi   88 (97)
                      .|-|||.|||-+
T Consensus        19 eqVKKiTVsIP~   30 (104)
T d1cmca_          19 EQVKKITVSIPL   30 (104)
T ss_dssp             CCEEEEEEEEEH
T ss_pred             HHHHEEEEEEEH
T ss_conf             445034676108


No 2  
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.81  E-value=36  Score=13.26  Aligned_cols=10  Identities=50%  Similarity=0.883  Sum_probs=7.6

Q ss_pred             EEEECCCCCC
Q ss_conf             9960200126
Q gi|254780699|r   86 IYIGNIQKNK   95 (97)
Q Consensus        86 iyigniqknk   95 (97)
                      -+||.+|.||
T Consensus        87 HfIG~LQsNK   96 (244)
T d1ct5a_          87 HFIGGLQTNK   96 (244)
T ss_dssp             EECSCCCGGG
T ss_pred             EEECCCCCCH
T ss_conf             2224555123


No 3  
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]}
Probab=9.10  E-value=53  Score=12.23  Aligned_cols=16  Identities=31%  Similarity=0.843  Sum_probs=12.9

Q ss_pred             CCCHHHHHHHHHHCCC
Q ss_conf             6014899999750002
Q gi|254780699|r    2 LFDNQFIENILKEDRE   17 (97)
Q Consensus         2 lfdnqfienilkedre   17 (97)
                      .|||+|..++|+..++
T Consensus       185 ~fDN~Yf~~ll~~~~~  200 (250)
T d1oafa_         185 IFDNSYFTELLSGEKE  200 (250)
T ss_dssp             CCSTHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             3552999999724524


No 4  
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.75  E-value=69  Score=11.58  Aligned_cols=25  Identities=24%  Similarity=0.574  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHCC----CHHCCCCCCEEEE
Q ss_conf             999999986343----1000368823788
Q gi|254780699|r   48 KEFMEYWIAHSS----RAWRTSKPRTYLN   72 (97)
Q Consensus        48 kefmeywiahss----rawrtskprtyln   72 (97)
                      .-|..-|+--|+    .+.-|..|..|..
T Consensus        27 slFiaGwlFVstGLAYdvFGtPrPneYft   55 (82)
T d2axte1          27 ALFIAGWLFVSTGLAYDVFGTPRPDSYYA   55 (82)
T ss_dssp             HHHHHHHHHHHTTHHHHHTTCCCTTCSSC
T ss_pred             HHHHHHHHHEECCCCHHHCCCCCCCCCCC
T ss_conf             79874165302460211237998002013


No 5  
>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=4.67  E-value=92  Score=10.82  Aligned_cols=35  Identities=9%  Similarity=0.237  Sum_probs=26.2

Q ss_pred             CCHHCCCCCCEEEEEEEECC----------CCCCEEEEEEECCCC
Q ss_conf             31000368823788887034----------652106899602001
Q gi|254780699|r   59 SRAWRTSKPRTYLNLHIASQ----------SKKIPVSIYIGNIQK   93 (97)
Q Consensus        59 srawrtskprtylnlhiasq----------skkipvsiyigniqk   93 (97)
                      ---|+.+.+.....++++..          ...|...+.|.|+|+
T Consensus        32 ~dfW~~~~~~~~vdI~V~p~~~~~f~~~L~~~~i~y~v~i~dvQ~   76 (92)
T d1jqga2          32 LDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVENVKE   76 (92)
T ss_dssp             CEEEECCBTTBCEEEEECGGGHHHHHHHHHHHTCEEEEEESCTHH
T ss_pred             CCEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             727557999986899989899999999999869848998304799


No 6  
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=4.28  E-value=98  Score=10.64  Aligned_cols=15  Identities=20%  Similarity=0.456  Sum_probs=8.1

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             007999999999998
Q gi|254780699|r   41 KNIKSITKEFMEYWI   55 (97)
Q Consensus        41 kniksitkefmeywi   55 (97)
                      +.++.+...|++.|+
T Consensus       214 ~~~~~~l~~~l~~~l  228 (230)
T d1o1ya_         214 KVLKGLLRSLLERMV  228 (230)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999996


No 7  
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=4.05  E-value=1e+02  Score=10.52  Aligned_cols=39  Identities=15%  Similarity=0.273  Sum_probs=26.6

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             899999750002001688999988999987641110079
Q gi|254780699|r    6 QFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIK   44 (97)
Q Consensus         6 qfienilkedrednnikslaqlqriairtvlanrtknik   44 (97)
                      +++++.+.....+---..+.++.+..|+.+|..---|+.
T Consensus        30 ~~~~~~l~~~~~~~l~~~~~~~E~~lI~~aL~~~~Gn~~   68 (91)
T d1ntca_          30 QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQ   68 (91)
T ss_dssp             HHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             999999873884179999999999999999999599599


No 8  
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=3.94  E-value=1e+02  Score=10.47  Aligned_cols=20  Identities=45%  Similarity=0.400  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             88999988999987641110
Q gi|254780699|r   22 KSLAQLQRIAIRTVLANRTK   41 (97)
Q Consensus        22 kslaqlqriairtvlanrtk   41 (97)
                      -|-.|.||+||-..|++..+
T Consensus       141 LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1         141 LSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             CCHHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHHHHHCCCCC
T ss_conf             99999989998640105898


No 9  
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.93  E-value=1.1e+02  Score=10.46  Aligned_cols=14  Identities=50%  Similarity=0.700  Sum_probs=7.9

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             11007999999999
Q gi|254780699|r   39 RTKNIKSITKEFME   52 (97)
Q Consensus        39 rtkniksitkefme   52 (97)
                      ||+.||..+++..|
T Consensus         5 r~k~iKr~a~~lie   18 (62)
T d1rq6a_           5 RTSFVKRIAKEMIE   18 (62)
T ss_dssp             CCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             40699999999999


No 10 
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}
Probab=3.89  E-value=1e+02  Score=10.49  Aligned_cols=8  Identities=63%  Similarity=0.900  Sum_probs=0.0

Q ss_pred             CCCCCCEE
Q ss_conf             03688237
Q gi|254780699|r   63 RTSKPRTY   70 (97)
Q Consensus        63 rtskprty   70 (97)
                      |+.|||++
T Consensus         9 R~~KPR~~   16 (249)
T d1u83a_           9 RTNKPRET   16 (249)
T ss_dssp             CCCSSCSS
T ss_pred             CCCCCCCC
T ss_conf             99998546


Done!