Query gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 97 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 07:43:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780699.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1cmca_ a.43.1.5 (A:) Met repr 10.4 37 0.0027 13.2 0.7 12 77-88 19-30 (104) 2 d1ct5a_ c.1.6.2 (A:) "Hypothet 9.8 36 0.0026 13.3 0.5 10 86-95 87-96 (244) 3 d1oafa_ a.93.1.1 (A:) Ascorbat 9.1 53 0.0039 12.2 1.4 16 2-17 185-200 (250) 4 d2axte1 f.23.38.1 (E:3-84) Cyt 6.7 69 0.005 11.6 0.8 25 48-72 27-55 (82) 5 d1jqga2 d.58.3.1 (A:4P-100P) P 4.7 92 0.0067 10.8 2.0 35 59-93 32-76 (92) 6 d1o1ya_ c.23.16.1 (A:) Hypothe 4.3 98 0.0072 10.6 3.2 15 41-55 214-228 (230) 7 d1ntca_ a.4.1.12 (A:) DNA-bind 4.0 1E+02 0.0075 10.5 4.0 39 6-44 30-68 (91) 8 d3dhwc1 c.37.1.12 (C:1-240) Me 3.9 1E+02 0.0076 10.5 2.0 20 22-41 141-160 (240) 9 d1rq6a_ a.4.15.1 (A:) ribosoma 3.9 1.1E+02 0.0077 10.5 1.1 14 39-52 5-18 (62) 10 d1u83a_ c.1.27.1 (A:) (2r)-pho 3.9 1E+02 0.0076 10.5 0.2 8 63-70 9-16 (249) No 1 >d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]} Probab=10.42 E-value=37 Score=13.19 Aligned_cols=12 Identities=58% Similarity=0.603 Sum_probs=6.3 Q ss_pred CCCCCCEEEEEE Q ss_conf 346521068996 Q gi|254780699|r 77 SQSKKIPVSIYI 88 (97) Q Consensus 77 sqskkipvsiyi 88 (97) .|-|||.|||-+ T Consensus 19 eqVKKiTVsIP~ 30 (104) T d1cmca_ 19 EQVKKITVSIPL 30 (104) T ss_dssp CCEEEEEEEEEH T ss_pred HHHHEEEEEEEH T ss_conf 445034676108 No 2 >d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=9.81 E-value=36 Score=13.26 Aligned_cols=10 Identities=50% Similarity=0.883 Sum_probs=7.6 Q ss_pred EEEECCCCCC Q ss_conf 9960200126 Q gi|254780699|r 86 IYIGNIQKNK 95 (97) Q Consensus 86 iyigniqknk 95 (97) -+||.+|.|| T Consensus 87 HfIG~LQsNK 96 (244) T d1ct5a_ 87 HFIGGLQTNK 96 (244) T ss_dssp EECSCCCGGG T ss_pred EEECCCCCCH T ss_conf 2224555123 No 3 >d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Probab=9.10 E-value=53 Score=12.23 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=12.9 Q ss_pred CCCHHHHHHHHHHCCC Q ss_conf 6014899999750002 Q gi|254780699|r 2 LFDNQFIENILKEDRE 17 (97) Q Consensus 2 lfdnqfienilkedre 17 (97) .|||+|..++|+..++ T Consensus 185 ~fDN~Yf~~ll~~~~~ 200 (250) T d1oafa_ 185 IFDNSYFTELLSGEKE 200 (250) T ss_dssp CCSTHHHHHHHHCCCT T ss_pred HHHHHHHHHHHHCCCC T ss_conf 3552999999724524 No 4 >d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]} Probab=6.75 E-value=69 Score=11.58 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=14.9 Q ss_pred HHHHHHHHHHCC----CHHCCCCCCEEEE Q ss_conf 999999986343----1000368823788 Q gi|254780699|r 48 KEFMEYWIAHSS----RAWRTSKPRTYLN 72 (97) Q Consensus 48 kefmeywiahss----rawrtskprtyln 72 (97) .-|..-|+--|+ .+.-|..|..|.. T Consensus 27 slFiaGwlFVstGLAYdvFGtPrPneYft 55 (82) T d2axte1 27 ALFIAGWLFVSTGLAYDVFGTPRPDSYYA 55 (82) T ss_dssp HHHHHHHHHHHTTHHHHHTTCCCTTCSSC T ss_pred HHHHHHHHHEECCCCHHHCCCCCCCCCCC T ss_conf 79874165302460211237998002013 No 5 >d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]} Probab=4.67 E-value=92 Score=10.82 Aligned_cols=35 Identities=9% Similarity=0.237 Sum_probs=26.2 Q ss_pred CCHHCCCCCCEEEEEEEECC----------CCCCEEEEEEECCCC Q ss_conf 31000368823788887034----------652106899602001 Q gi|254780699|r 59 SRAWRTSKPRTYLNLHIASQ----------SKKIPVSIYIGNIQK 93 (97) Q Consensus 59 srawrtskprtylnlhiasq----------skkipvsiyigniqk 93 (97) ---|+.+.+.....++++.. ...|...+.|.|+|+ T Consensus 32 ~dfW~~~~~~~~vdI~V~p~~~~~f~~~L~~~~i~y~v~i~dvQ~ 76 (92) T d1jqga2 32 LDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVENVKE 76 (92) T ss_dssp CEEEECCBTTBCEEEEECGGGHHHHHHHHHHHTCEEEEEESCTHH T ss_pred CCEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 727557999986899989899999999999869848998304799 No 6 >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Probab=4.28 E-value=98 Score=10.64 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=8.1 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 007999999999998 Q gi|254780699|r 41 KNIKSITKEFMEYWI 55 (97) Q Consensus 41 kniksitkefmeywi 55 (97) +.++.+...|++.|+ T Consensus 214 ~~~~~~l~~~l~~~l 228 (230) T d1o1ya_ 214 KVLKGLLRSLLERMV 228 (230) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999996 No 7 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=4.05 E-value=1e+02 Score=10.52 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=26.6 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 899999750002001688999988999987641110079 Q gi|254780699|r 6 QFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIK 44 (97) Q Consensus 6 qfienilkedrednnikslaqlqriairtvlanrtknik 44 (97) +++++.+.....+---..+.++.+..|+.+|..---|+. T Consensus 30 ~~~~~~l~~~~~~~l~~~~~~~E~~lI~~aL~~~~Gn~~ 68 (91) T d1ntca_ 30 QWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQ 68 (91) T ss_dssp HHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTTCTT T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 999999873884179999999999999999999599599 No 8 >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Probab=3.94 E-value=1e+02 Score=10.47 Aligned_cols=20 Identities=45% Similarity=0.400 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 88999988999987641110 Q gi|254780699|r 22 KSLAQLQRIAIRTVLANRTK 41 (97) Q Consensus 22 kslaqlqriairtvlanrtk 41 (97) -|-.|.||+||-..|++..+ T Consensus 141 LSGG~~QRvaiAraL~~~P~ 160 (240) T d3dhwc1 141 LSGGQKQRVAIARALASNPK 160 (240) T ss_dssp CCHHHHHHHHHHHHHHTCCS T ss_pred CCHHHHHHHHHHHHHCCCCC T ss_conf 99999989998640105898 No 9 >d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=3.93 E-value=1.1e+02 Score=10.46 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=7.9 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 11007999999999 Q gi|254780699|r 39 RTKNIKSITKEFME 52 (97) Q Consensus 39 rtkniksitkefme 52 (97) ||+.||..+++..| T Consensus 5 r~k~iKr~a~~lie 18 (62) T d1rq6a_ 5 RTSFVKRIAKEMIE 18 (62) T ss_dssp CCHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHH T ss_conf 40699999999999 No 10 >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} Probab=3.89 E-value=1e+02 Score=10.49 Aligned_cols=8 Identities=63% Similarity=0.900 Sum_probs=0.0 Q ss_pred CCCCCCEE Q ss_conf 03688237 Q gi|254780699|r 63 RTSKPRTY 70 (97) Q Consensus 63 rtskprty 70 (97) |+.|||++ T Consensus 9 R~~KPR~~ 16 (249) T d1u83a_ 9 RTNKPRET 16 (249) T ss_dssp CCCSSCSS T ss_pred CCCCCCCC T ss_conf 99998546 Done!