RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780699|ref|YP_003065112.1| hypothetical protein
CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 12/53 (22%)

Query: 1   MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVL--ANRTKNIKSITKEFM 51
           ML      +           IK L        + VL  A  ++ ++   + F 
Sbjct: 271 MLDQQGLGDQS-------MRIKHLLPRNT---QIVLFSATFSERVEKYAERFA 313


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 662,211
Number of extensions: 23316
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 6
Length of query: 97
Length of database: 4,956,049
Length adjustment: 57
Effective length of query: 40
Effective length of database: 3,029,164
Effective search space: 121166560
Effective search space used: 121166560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)