RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780699|ref|YP_003065112.1| hypothetical protein
CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>2rij_A Putative 2,3,4,5-tetrahydropyridine-2- carboxylate N-
           succinyltransferase; NP_282733.1, structural genomics;
           HET: MSE CIT; 1.90A {Campylobacter jejuni}
          Length = 387

 Score = 28.0 bits (62), Expect = 0.50
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 4   DNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSRAWR 63
            ++F++ +  ED +         L+    + +   +    K    EF    +        
Sbjct: 78  ASEFVQTLKLEDIDFALSCFKPFLEEDGHQNIDLLKIIKDKFKDDEFSFVCLFEDKE--P 135

Query: 64  TSKPRTYLNLHIASQSKKIPVSIYIGNI 91
            S    YL L++ S  K    SI +   
Sbjct: 136 LSVESIYLKLYLLSTKKVPLRSINLNGA 163


>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
           genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
          Length = 549

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 11/59 (18%)

Query: 1   MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSS 59
            +   QF E  L     D +I  +       IR           +   E ++  IA+  
Sbjct: 349 AMVYPQFYEYRLS----DRDIAGM-------IRVDKVPILDEFYNFANELIDICIANKD 396


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 777,547
Number of extensions: 28014
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 7
Length of query: 97
Length of database: 5,693,230
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,165,858
Effective search space: 141639172
Effective search space used: 141639172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)