HHsearch alignment for GI: 254780700 and conserved domain: COG0265

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones].

Probab=98.24  E-value=2e-05  Score=53.23  Aligned_cols=85  Identities=19%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             CCEEEEECCHHHC----CEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             5469872896571----520079996068897898299988899988999938999999999988625995699999717
Q gi|254780700|r  394 LGMVLQDINDGNK----KLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYD  469 (489)
Q Consensus       394 lGl~v~~l~~~~~----~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~  469 (489)
T Consensus       251 lgv~~~~~~~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~~ng~~v~~~~~l~~~v~~~~--~g~~v~~~~~r~  328 (347)
T COG0265         251 LGVIGEPLTADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNR--PGDEVALKLLRG  328 (347)
T ss_pred             CCEEEEECCCHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCCC--CCCEEEEEEEEC
T ss_conf             542768745110268767887688651799857873787787799789988557888888873269--997688999978


Q ss_pred             CCCCCCCCCCEEEEEEECC
Q ss_conf             7643346884368887528
Q gi|254780700|r  470 PDMQSGNDNMSRFVSLKID  488 (489)
Q Consensus       470 ~~~~~~~~~~~rFVal~ld  488 (489)
T Consensus       329 --------g~~~~~~v~l~  339 (347)
T COG0265         329 --------GKERELAVTLG  339 (347)
T ss_pred             --------CEEEEEEEECC
T ss_conf             --------83577768615