HHsearch alignment for GI: 254780700 and conserved domain: PRK09681
>PRK09681 putative type II secretion protein GspC; Provisional.
Probab=97.29 E-value=2.6e-05 Score=52.48 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=48.1
Q ss_pred ECCCCCCCC---CCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCCC
Q ss_conf 011111211---3467116788875243147874310122203566752010120478166512556
Q gi|254780700|r 311 TAVVKESPA---DKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVL 374 (489)
Q Consensus 311 ~~V~~~sPA---~~AGLk~GDvI~~ing~~I~~~~~l~~~i~~~~~G~~v~l~v~R~g~~~~~~V~l 374 (489)
T Consensus 252 YRl~PGkd~~lF~~~Glq~gDlavsiNG~dLtDp~~a~~~~~~l~~ate~~ltVeRdGq~~~I~isL 318 (319)
T PRK09681 252 YAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIAL 318 (319)
T ss_pred EEECCCCCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCEEEEEEEEC
T ss_conf 8727998889999729998888898269667898999999996000715589999799689999971