HHsearch alignment for GI: 254780700 and conserved domain: cd00986

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.68  E-value=1.3e-07  Score=67.12  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             EEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf             20079996068897898299988899988999938999999999988625995699999717764334688436888752
Q gi|254780700|r  408 LVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGNDNMSRFVSLKI  487 (489)
Q Consensus       408 ~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~~~~~~~~~~rFVal~l  487 (489)
T Consensus         7 ~~Gv~V~~V~~gsPA~~~-Lk~GDvI~~vdGk~v~~~~~l~~~i~~~~~G--d~V~l~v~R~gk~--------~~~~vtL   75 (79)
T cd00986           7 YHGVYVTSVVEGMPAAGK-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEG--DTVKLKVKREEKE--------LPEDLIL   75 (79)
T ss_pred             CCEEEEEEECCCCCHHHC-CCCCCEEEEECCEECCCHHHHHHHHHCCCCC--CEEEEEEEECCEE--------EEEEEEE
T ss_conf             781899996799973770-7789999999998957999999999659999--9899999999999--------9999997


Q ss_pred             C
Q ss_conf             8
Q gi|254780700|r  488 D  488 (489)
Q Consensus       488 d  488 (489)
T Consensus        76 ~   76 (79)
T cd00986          76 K   76 (79)
T ss_pred             E
T ss_conf             2