HHsearch alignment for GI: 254780700 and conserved domain: cd00986
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.68 E-value=1.3e-07 Score=67.12 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=57.3
Q ss_pred EEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 20079996068897898299988899988999938999999999988625995699999717764334688436888752
Q gi|254780700|r 408 LVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGNDNMSRFVSLKI 487 (489)
Q Consensus 408 ~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~~~~~~~~~~rFVal~l 487 (489)
T Consensus 7 ~~Gv~V~~V~~gsPA~~~-Lk~GDvI~~vdGk~v~~~~~l~~~i~~~~~G--d~V~l~v~R~gk~--------~~~~vtL 75 (79)
T cd00986 7 YHGVYVTSVVEGMPAAGK-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEG--DTVKLKVKREEKE--------LPEDLIL 75 (79)
T ss_pred CCEEEEEEECCCCCHHHC-CCCCCEEEEECCEECCCHHHHHHHHHCCCCC--CEEEEEEEECCEE--------EEEEEEE
T ss_conf 781899996799973770-7789999999998957999999999659999--9899999999999--------9999997
Q ss_pred C
Q ss_conf 8
Q gi|254780700|r 488 D 488 (489)
Q Consensus 488 d 488 (489)
T Consensus 76 ~ 76 (79)
T cd00986 76 K 76 (79)
T ss_pred E
T ss_conf 2