>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

Probab=98.75 E-value=6.2e-08 Score=69.22 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=52.6 Q ss_pred EEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC Q ss_conf 0799960688978982999888999889999389999999999886259956999997177643 Q gi|254780700|r 410 RIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQ 473 (489) Q Consensus 410 gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~~~ 473 (489) T Consensus 13 ~~vV~~V~~~spA~~AGl~~GD~I~~ing~~v~~~~~~~~~i~~~---~~~~i~l~v~R~g~~~ 73 (79) T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQEN---PGKPLTLTVERNGETI 73 (79) T ss_pred CCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHC---CCCEEEEEEEECCEEE T ss_conf 999999899998998599999999999999958999999999858---9988999999999998

HHsearch alignment for GI: 254780700 and conserved domain: cd00989