>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

Probab=99.45 E-value=9.1e-15 Score=112.77 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=69.2 Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEC Q ss_conf 43320003421667644176444411320111112113467116788875243147874310122203566752010120 Q gi|254780700|r 283 GWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLC 362 (489) Q Consensus 283 g~lGv~~~~v~~~la~~lgl~~~~GvlV~~V~~~sPA~~AGLk~GDvI~~ing~~I~~~~~l~~~i~~~~~G~~v~l~v~ 362 (489) T Consensus 1 P~lGi~~~~------------~~g~~~V~~V~~~sPA~~AGl~~GD~IvaidG~~v~~~~~~---~~~~~~G~~v~l~v~ 65 (80) T cd00990 1 PYLGLTLDK------------EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQDR---LKEYQAGDPVELTVF 65 (80) T ss_pred CCCCEEEEC------------CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEEHHHHHH---HHHCCCCCEEEEEEE T ss_conf 956669865------------69959999988899699859998999999999992378999---973699898999999 Q ss_pred CCCCEEEECCCCCC Q ss_conf 47816651255655 Q gi|254780700|r 363 KEGSKHSVAVVLGS 376 (489) Q Consensus 363 R~g~~~~~~V~l~~ 376 (489) T Consensus 66 R~g~l~~~~vtL~~ 79 (80) T cd00990 66 RDDRLIEVPLTLAD 79 (80) T ss_pred ECCEEEEEEEEECC T ss_conf 99999998999359

HHsearch alignment for GI: 254780700 and conserved domain: cd00990