HHsearch alignment for GI: 254780700 and conserved domain: cd00991
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.94 E-value=4.5e-09 Score=76.49 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
Q ss_conf 20079996068897898299988899988999938999999999988625995699999717764334
Q gi|254780700|r 408 LVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSG 475 (489)
Q Consensus 408 ~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~~~~~ 475 (489)
T Consensus 9 ~~Gv~V~~V~~gsPA~~AGL~~GDVI~~Ing~~I~~~~d~~~~l~~~~pG--~~v~v~v~R~g~~lT~ 74 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALKPTKPG--EVITVTVLPSTTKLTN 74 (79)
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCCCCC--CEEEEEEEECCEEEEE
T ss_conf 59779999678996998699988899998999987999999999618999--9899999989999777