HHsearch alignment for GI: 254780700 and conserved domain: cd00992

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

Probab=98.09  E-value=1.9e-05  Score=53.30  Aligned_cols=55  Identities=22%  Similarity=0.462  Sum_probs=43.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCC--CCEEEEECCCCCCCCEEEEE
Q ss_conf             4411320111112113467116788875243147874--31012220356675201012
Q gi|254780700|r  305 TKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSH--QDFVWQIASRSPKEQVKISL  361 (489)
Q Consensus       305 ~~GvlV~~V~~~sPA~~AGLk~GDvI~~ing~~I~~~--~~l~~~i~~~~~G~~v~l~v  361 (489)
T Consensus        25 ~~~~~I~~v~~~s~A~~~~L~~GD~Il~INg~~v~~~~~~~v~~~l~~--~~~~v~L~V   81 (82)
T cd00992          25 GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKN--SGDEVTLTV   81 (82)
T ss_pred             CCCEEEEEECCCCCHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHC--CCCEEEEEE
T ss_conf             999999998689903434899999989899999999989999999984--999599998