HHsearch alignment for GI: 254780700 and conserved domain: pfam00863
>pfam00863 Peptidase_C4 Peptidase family C4. This peptidase is present in the nuclear inclusion protein of potyviruses.
Probab=98.06 E-value=7.1e-05 Score=49.68 Aligned_cols=126 Identities=18% Similarity=0.288 Sum_probs=78.1
Q ss_pred EEEECHHCCC-CCCEEEEECCCCEEE-E---ECCCCCCCCCCEEEEEEECCCCCCCCCC-CCCCCCCCCCEEEEECCCCC
Q ss_conf 2985101047-871437962898067-4---0111233444328999606766765565-56731112414675236655
Q gi|254780700|r 121 YILTSNHIVE-DGASFSVILSDDTEL-P---AKLVGTDALFDLAVLKVQSDRKFIPVEF-EDANNIRVGEAVFTIGNPFR 194 (489)
Q Consensus 121 ~ilTn~hvv~-~a~~i~V~~~dg~~~-~---a~vvg~D~~~DlAvlki~~~~~~~~~~l-g~s~~~~~G~~v~aiG~P~g 194 (489)
T Consensus 40 ~IItn~HLfkrnnG~L~i~s~hG~f~v~Nt~~l~v~~i~g~DliiIrm--PkDfpPf~~~l~FR~P~~~ervclVg~nFq 117 (233)
T pfam00863 40 YIITNAHLFKRNNGTLTIRSQHGEFTVKNTTQLKVHPIEGRDIVIIRL--PKDFPPFPQKLKFRAPTEGERVCLVGTNFQ 117 (233)
T ss_pred EEEECHHHEECCCCEEEEEECCCEEECCCCCEEEEEEECCCCEEEEEC--CCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 998754514248972999961326984887468788727942899969--998898630122589998886999965652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECC-CEEEEEECCCCC
Q ss_conf 31111258744311223344342023323320134770354034-303555123445
Q gi|254780700|r 195 LRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNAL-GHVIGVNAMIVT 250 (489)
Q Consensus 195 ~~~tvt~GiiSa~~R~~~~~~~~~iqtDa~InpGnSGGpl~n~~-G~viGint~i~~ 250 (489)
T Consensus 118 ~k~~~s--~vSesS~i~p~~~~~fWkHwIsTk~G~CGlPlVs~~Dg~IVGiHsl~~~ 172 (233)
T pfam00863 118 DKSISS--TVSESSAIFPEGNSGFWKHWISTKDGMCGLPLVSTKDGKIVGIHSLANN 172 (233)
T ss_pred CCCEEE--EECCCEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCC
T ss_conf 784248--9868605776499987689874899867884698357939988840267