HHsearch alignment for GI: 254780700 and conserved domain: pfam05579
>pfam05579 Peptidase_S32 Equine arteritis virus serine endopeptidase S32. Serine peptidases involved in processing nidovirus polyprotein.
Probab=97.39 E-value=0.0017 Score=40.92 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred EEEEEECCCCEEEECHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEEC-CCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 0278975996298510104787143796289806740111233444328999606-766765565567311124146752
Q gi|254780700|r 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQS-DRKFIPVEFEDANNIRVGEAVFTI 189 (489)
Q Consensus 111 GsG~ii~~~G~ilTn~hvv~~a~~i~V~~~dg~~~~a~vvg~D~~~DlAvlki~~-~~~~~~~~lg~s~~~~~G~~v~ai 189 (489)
T Consensus 1 GgVfti~g~~vvvTAsHvl~~~~a-rv~-~~g~~~~---ltFk~~GDyA~A~~~~w~G~aP~~~fa~~~ytGrAyw~tst 75 (426)
T pfam05579 1 GGVFTINGNVVVVTASHVLGGNKA-RVS-GVGFNQM---LTFKTNGDYAFAVVPEWPGAAPKLKFAQRGYTGRAYWCTST 75 (426)
T ss_pred CCEEEECCEEEEEEEEEEECCCCE-EEE-ECCCEEE---EEEECCCCEEEEECCCCCCCCCCCEECCCCCCCCEEEECCC
T ss_conf 974887892899986777359825-886-3143058---99610573445655778888874243477776643663278
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCEEEEEECCC
Q ss_conf 36655311112587443112233443420233233201347703540343035551234
Q gi|254780700|r 190 GNPFRLRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNALGHVIGVNAMI 248 (489)
Q Consensus 190 G~P~g~~~tvt~GiiSa~~R~~~~~~~~~iqtDa~InpGnSGGpl~n~~G~viGint~i 248 (489)
T Consensus 76 G--------vE~glvg--------~~~a~----cfT~cGDSGSpVi~e~g~lvGVHTGS 114 (426)
T pfam05579 76 G--------VEPGLVG--------LGFAF----CFTKCGDSGSPVITEDGNLVGVHTGS 114 (426)
T ss_pred C--------CCCCCCC--------CCEEE----EECCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 8--------8755015--------74389----98467888995377899789886268