PSIBLAST alignment of GI: 254780700 and protein with PDB id: 1lcy
>gi|21466051|pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease Htra2 Length = 325
Score = 54.0 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 44/215 (20%)
Query: 41 PPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPI 100
V+ + +P++V + + + HP
Sbjct: 18 ADVVEKTAPAVVYI--------------------EILDRHPFL----------------- 40
Query: 101 LSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAV 160
+ GSGF + DG I+T+ H+V D V L A + D + D+A
Sbjct: 41 --GREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIAT 98
Query: 161 LKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAG-----IVSALDRDIPDRP 215
L++Q+ + + ++R GE V +G+PF L+ T+++G A D +P
Sbjct: 99 LRIQTKEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTN 158
Query: 216 GTFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVT 250
+ Q DA I+ GN+GGP N G VIGVN M VT
Sbjct: 159 VEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT 193