PSIBLAST alignment of GI: 254780700 and protein with PDB id: 1lcy

>gi|21466051|pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease Htra2 Length = 325
 Score = 54.0 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 44/215 (20%)

Query: 41  PPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPI 100
             V+ + +P++V +                     + + HP                   
Sbjct: 18  ADVVEKTAPAVVYI--------------------EILDRHPFL----------------- 40

Query: 101 LSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAV 160
                  +  GSGF +  DG I+T+ H+V D     V L       A +   D + D+A 
Sbjct: 41  --GREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIAT 98

Query: 161 LKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAG-----IVSALDRDIPDRP 215
           L++Q+      +    + ++R GE V  +G+PF L+ T+++G        A D  +P   
Sbjct: 99  LRIQTKEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTN 158

Query: 216 GTFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVT 250
             + Q DA I+ GN+GGP  N  G VIGVN M VT
Sbjct: 159 VEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT 193