RPSBLAST alignment for GI: 254780700 and conserved domain: TIGR02038
>gnl|CDD|162671 TIGR02038, protease_degS, periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E). Length = 351
Score = 160 bits (407), Expect = 6e-40
Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 7/273 (2%)
Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDR-KF 169
GSG ++ +GYILT+ H+++ V L D + A+LVG+D L DLAVLK++ D
Sbjct: 80 GSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEAELVGSDPLTDLAVLKIEGDNLPT 139
Query: 170 IPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQ 227
IPV VG+ V IGNP+ L T++ GI+SA R+ G F Q DA IN
Sbjct: 140 IPVNL--DRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAAINA 197
Query: 228 GNSGGPCFNALGHVIGVN--AMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWF 285
GNSGG N G ++G+N + + G+ IP+ + K + +I GRV G+
Sbjct: 198 GNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYI 257
Query: 286 GIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFV 345
G+ +++ +A LGL +G +IT V PA +AG+ V DVI DG+ + ++ +
Sbjct: 258 GVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELM 317
Query: 346 WQIASRSPKEQVKISLCKEGSKHSVAVVLGSSP 378
+IA P +V +++ ++G + + V + P
Sbjct: 318 DRIAETRPGSKVMVTVLRQGKQLELPVTIDEKP 350