RPSBLAST alignment for GI: 254780700 and conserved domain: TIGR02038

>gnl|CDD|162671 TIGR02038, protease_degS, periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E). Length = 351
 Score =  160 bits (407), Expect = 6e-40
 Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 7/273 (2%)

Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDR-KF 169
           GSG  ++ +GYILT+ H+++      V L D  +  A+LVG+D L DLAVLK++ D    
Sbjct: 80  GSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEAELVGSDPLTDLAVLKIEGDNLPT 139

Query: 170 IPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQ 227
           IPV         VG+ V  IGNP+ L  T++ GI+SA  R+     G   F Q DA IN 
Sbjct: 140 IPVNL--DRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAAINA 197

Query: 228 GNSGGPCFNALGHVIGVN--AMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWF 285
           GNSGG   N  G ++G+N  +      +   G+   IP+ +  K +  +I  GRV  G+ 
Sbjct: 198 GNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYI 257

Query: 286 GIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFV 345
           G+  +++   +A  LGL   +G +IT V    PA +AG+ V DVI   DG+ +   ++ +
Sbjct: 258 GVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELM 317

Query: 346 WQIASRSPKEQVKISLCKEGSKHSVAVVLGSSP 378
            +IA   P  +V +++ ++G +  + V +   P
Sbjct: 318 DRIAETRPGSKVMVTVLRQGKQLELPVTIDEKP 350