RPSBLAST alignment for GI: 254780700 and conserved domain: cd00986
>gnl|CDD|29043 cd00986, PDZ_LON_protease, PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.. Length = 79
Score = 43.0 bits (101), Expect = 2e-04
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 306 KGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEG 365
G +T+VV+ PA +K GD I +DG+ K ++ + I S+ + VK+ + +E
Sbjct: 8 HGVYVTSVVEGMPA-AGKLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREE 66
Query: 366 SKHSVAVVLGSSP 378
+ ++L + P
Sbjct: 67 KELPEDLILKTFP 79