RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780700|ref|YP_003065113.1| serine protease DO-like
protease [Candidatus Liberibacter asiaticus str. psy62]
         (489 letters)



>gnl|CDD|162670 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
           family.  This family consists of a set proteins various
           designated DegP, heat shock protein HtrA, and protease
           DO. The ortholog in Pseudomonas aeruginosa is designated
           MucD and is found in an operon that controls mucoid
           phenotype. This family also includes the DegQ (HhoA)
           paralog in E. coli which can rescue a DegP mutant, but
           not the smaller DegS paralog, which cannot. Members of
           this family are located in the periplasm and have
           separable functions as both protease and chaperone.
           Members have a trypsin domain and two copies of a PDZ
           domain. This protein protects bacteria from thermal and
           other stresses and may be important for the survival of
           bacterial pathogens.// The chaperone function is
           dominant at low temperatures, whereas the proteolytic
           activity is turned on at elevated temperatures.
          Length = 428

 Score =  311 bits (800), Expect = 2e-85
 Identities = 144/437 (32%), Positives = 225/437 (51%), Gaps = 30/437 (6%)

Query: 39  DLPPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEE 98
              P++ +V+P++V++ VE   K                     + +F  D   F   + 
Sbjct: 2   SFAPLVEKVAPAVVNISVEGTVKRRNRPPAL---------PPFFRQFFGDDMPNFPRQQ- 51

Query: 99  PILSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDL 158
               +   R + GSG  I+ DGYILT+NH+V+     +V LSD  E  AKLVG D   D+
Sbjct: 52  ---RERKVRGL-GSGVIISADGYILTNNHVVDGADEITVTLSDGREFKAKLVGKDPRTDI 107

Query: 159 AVLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIP--DRPG 216
           AVLK+ + +    ++  D++ +RVG+ V  IGNPF L  TV++GIVSAL R         
Sbjct: 108 AVLKIDAKKNLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTSGIVSALGRSGLGIGDYE 167

Query: 217 TFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLIS 276
            F Q DA IN GNSGGP  N  G VIG+N  I +    ++G+G  IP ++ K  +  LI 
Sbjct: 168 NFIQTDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIE 227

Query: 277 KGRVDHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGR 336
            G+V  GW G+  Q +T +LA  LGL   +G+L+  V+  SPA+KAG+K GDVI  ++G+
Sbjct: 228 GGKVQRGWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGK 287

Query: 337 IIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGM 396
            I S  D    I +  P ++V + + ++G + ++ V LG+SP  +            LG+
Sbjct: 288 PISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS-----SSNPFLGL 342

Query: 397 VLQDINDGNKKLVR-------IVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVER 449
            + +++   +K +R       +V             G+Q G  I+SVN   VS + ++ +
Sbjct: 343 TVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRK 402

Query: 450 LIGKAKEKKRDSVLLQI 466
           ++ +AK+     V L I
Sbjct: 403 VLDRAKKG--GRVALLI 417


>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional.
          Length = 455

 Score =  192 bits (488), Expect = 2e-49
 Identities = 142/485 (29%), Positives = 231/485 (47%), Gaps = 46/485 (9%)

Query: 3   KRQILSVKSICTVALTCVIFSSTYLVLEAKLP--PSSVDLPPVIARVSPSIVSVMVEPKK 60
           + Q+LS  ++ +V LT          +  ++        L P++ +V P++VSV VE   
Sbjct: 4   QTQLLSALAL-SVGLTLSASFQAVASIPGQVAGQAPLPSLAPMLEKVLPAVVSVRVEGTA 62

Query: 61  KVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEP-ILSDTVERLMFGSGFFI-TD 118
                          +PE+          F KFF  + P   +   E L  GSG  I   
Sbjct: 63  SQGQ----------KIPEE----------FKKFFGDDLPDQPAQPFEGL--GSGVIIDAA 100

Query: 119 DGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDAN 178
            GY+LT+NH++      S+ L+D  E  AKL+G+D   D+A+L++Q+  K   +   D++
Sbjct: 101 KGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD 160

Query: 179 NIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQGNSGGPCFN 236
            +RVG+    +GNPF L  T ++GI+SAL R   +  G   F Q DA IN+GNSGG   N
Sbjct: 161 KLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGLENFIQTDASINRGNSGGALLN 220

Query: 237 ALGHVIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWFGIMTQNLTQEL 296
             G +IG+N  I+  G   +G+G  IP ++ +     LI  G +  G  GI    ++ ++
Sbjct: 221 LNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADI 280

Query: 297 AIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQ 356
           A    L   +G+ ++ V+  S + KAG+K GD+I  L+G+ + S  +   +IA+  P  +
Sbjct: 281 AKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTK 340

Query: 357 VKISLCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGMVLQD--INDGNKKLVRIVAL 414
           VK+ L + G    V V L +S ++      E+    L G  L D  + DG K    I   
Sbjct: 341 VKLGLLRNGKPLEVEVTLDTSTSSSASA--EMITPALQGATLSDGQLKDGTKG---IKID 395

Query: 415 NPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQS 474
              +       G+QK   I+ VN   V+ I ++ +++      K   + LQI        
Sbjct: 396 EVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL----AAKPAIIALQI------VR 445

Query: 475 GNDNM 479
           GN+++
Sbjct: 446 GNESI 450


>gnl|CDD|182855 PRK10942, PRK10942, serine endoprotease; Provisional.
          Length = 473

 Score =  181 bits (461), Expect = 4e-46
 Identities = 129/431 (29%), Positives = 214/431 (49%), Gaps = 39/431 (9%)

Query: 40  LPPVIARVSPSIVSVMVEPKKKVSVEQM---FNAYGFGNLP---EDHPLKNYFRKDFHKF 93
           L P++ +V PS+VS+ VE    V+  +M   F  +   N P   E  P ++        F
Sbjct: 40  LAPMLEKVMPSVVSINVEGSTTVNTPRMPRQFQQFFGDNSPFCQEGSPFQS------SPF 93

Query: 94  FSGEEPILSDTVER--LMFGSGFFI-TDDGYILTSNHIVEDGASFSVILSDDTELPAKLV 150
             G +       ++  +  GSG  I  D GY++T+NH+V++     V LSD  +  AK+V
Sbjct: 94  CQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATKIKVQLSDGRKFDAKVV 153

Query: 151 GTDALFDLAVLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDR- 209
           G D   D+A++++Q+ +    ++  D++ +RVG+    IGNP+ L  TV++GIVSAL R 
Sbjct: 154 GKDPRSDIALIQLQNPKNLTAIKMADSDALRVGDYTVAIGNPYGLGETVTSGIVSALGRS 213

Query: 210 --DIPDRPGTFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSGQFHMGVGLIIPLSII 267
             ++ +    F Q DA IN+GNSGG   N  G +IG+N  I+     ++G+G  IP +++
Sbjct: 214 GLNVENYE-NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV 272

Query: 268 KKAIPSLISKGRVDHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVG 327
           K     ++  G+V  G  GIM   L  ELA  + +   +G+ ++ V+  S A KAG+K G
Sbjct: 273 KNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAG 332

Query: 328 DVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKNDMHLE 387
           DVI  L+G+ I S      Q+ +     ++ + L ++G   +V V L  S   + D    
Sbjct: 333 DVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVD---- 388

Query: 388 VGDKELLGMVLQDI------NDGNKKLVRIVALNPNREREVEAK-GIQKGMTIVSVNTHE 440
                    +   I      N G  K V +  + P       A+ G++KG  I+  N   
Sbjct: 389 ------SSNIFNGIEGAELSNKGGDKGVVVDNVKPG---TPAAQIGLKKGDVIIGANQQP 439

Query: 441 VSCIKDVERLI 451
           V  I ++ +++
Sbjct: 440 VKNIAELRKIL 450


>gnl|CDD|162671 TIGR02038, protease_degS, periplasmic serine pepetdase DegS.  This
           family consists of the periplasmic serine protease DegS
           (HhoB), a shorter paralog of protease DO (HtrA, DegP)
           and DegQ (HhoA). It is found in E. coli and several
           other Proteobacteria of the gamma subdivision. It
           contains a trypsin domain and a single copy of PDZ
           domain (in contrast to DegP with two copies). A critical
           role of this DegS is to sense stress in the periplasm
           and partially degrade an inhibitor of sigma(E).
          Length = 351

 Score =  160 bits (407), Expect = 6e-40
 Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 7/273 (2%)

Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDR-KF 169
           GSG  ++ +GYILT+ H+++      V L D  +  A+LVG+D L DLAVLK++ D    
Sbjct: 80  GSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEAELVGSDPLTDLAVLKIEGDNLPT 139

Query: 170 IPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQ 227
           IPV         VG+ V  IGNP+ L  T++ GI+SA  R+     G   F Q DA IN 
Sbjct: 140 IPVNL--DRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAAINA 197

Query: 228 GNSGGPCFNALGHVIGVN--AMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWF 285
           GNSGG   N  G ++G+N  +      +   G+   IP+ +  K +  +I  GRV  G+ 
Sbjct: 198 GNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYI 257

Query: 286 GIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFV 345
           G+  +++   +A  LGL   +G +IT V    PA +AG+ V DVI   DG+ +   ++ +
Sbjct: 258 GVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELM 317

Query: 346 WQIASRSPKEQVKISLCKEGSKHSVAVVLGSSP 378
            +IA   P  +V +++ ++G +  + V +   P
Sbjct: 318 DRIAETRPGSKVMVTVLRQGKQLELPVTIDEKP 350


>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional.
          Length = 353

 Score =  152 bits (387), Expect = 1e-37
 Identities = 89/275 (32%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFI 170
           GSG  +   GYILT+ H++ D     V L D     A LVG+D+L DLAVLK+ +    +
Sbjct: 80  GSGVIMDQRGYILTNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATN--L 137

Query: 171 PVEFEDANNI-RVGEAVFTIGNPFRLRGTVSAGIVSALDRD--IPDRPGTFTQIDAPINQ 227
           PV   +   +  +G+ V  IGNP+ L  T++ GI+SA  R    P     F Q DA IN 
Sbjct: 138 PVIPINPKRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLSPTGRQNFLQTDASINH 197

Query: 228 GNSGGPCFNALGHVIGVNAMIV---TSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGW 284
           GNSGG   N+LG ++G+N +       G+   G+G  IP  +  K +  LI  GRV  G+
Sbjct: 198 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGY 257

Query: 285 FGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDF 344
            GI  + +    A   G+   +G ++  V  + PA KAG++V D+I  ++ +   S  + 
Sbjct: 258 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALET 317

Query: 345 VWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPT 379
           + Q+A   P   + + + ++  + ++ V +   P 
Sbjct: 318 MDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPA 352


>gnl|CDD|128524 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2.  Also
           called DHR (Dlg homologous region) or GLGF (relatively
           well conserved tetrapeptide in these domains). Some PDZs
           have been shown to bind C-terminal polypeptides; others
           appear to bind internal (non-C-terminal) polypeptides.
           Different PDZs possess different binding specificities.
          Length = 85

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 281 DHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKS 340
             G  G        E           G ++++VV  SPA KAG+KVGDVI  ++G  ++ 
Sbjct: 10  GGGGLGFSLVGGKDEG---------GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEG 60

Query: 341 HQDFVWQIASRSPKEQVKISLCKEG 365
                     +    +V +++ + G
Sbjct: 61  LTHLEAVDLLKKAGGKVTLTVLRGG 85


>gnl|CDD|161683 TIGR00054, TIGR00054, RIP metalloprotease RseP.  A model that
           detects fragments as well matches a number of members of
           the PEPTIDASE FAMILY S2C. The region of match appears
           not to overlap the active site domain.
          Length = 420

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 290 QNLTQELAIPLGLRGTKGSLITA-VVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQI 348
           +N T E+   L  RG K   + + V   SPA+KAG+K GD I  ++G  ++S  DFV  +
Sbjct: 186 ENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAV 245

Query: 349 ASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKN 382
              +P + + I + + G   S+++     P AK 
Sbjct: 246 -KENPGKSMDIKVERNGETLSISLT----PEAKG 274


>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional.
          Length = 449

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 294 QELAIPLGLRGTKGSLITAVVKE----SPADKAGMKVGDVICMLDGRIIKSHQDFVWQIA 349
           Q+    LG+R  +G  I  V+ E    S A KAG++ GD I  +DG+ +   Q FV  + 
Sbjct: 206 QDPVSSLGIR-PRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLV- 263

Query: 350 SRSPKEQVKISLCKEGSKHSVAVVLGSSPTAK 381
             +P + + + + ++GS     + L  +P +K
Sbjct: 264 RDNPGKPLALEIERQGS----PLSLTLTPDSK 291


>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD.  This
           model describes the bacterial and chloroplast form of
           MinD, a multifunctional cell division protein that
           guides correct placement of the septum. The homologous
           archaeal MinD proteins, with many archaeal genomes
           having two or more forms, are described by a separate
           model.
          Length = 261

 Score = 33.1 bits (76), Expect = 0.16
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 426 GIQKG---------MTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQI-KYDPDMQSG 475
           GI+ G           IV V T EVS ++D +R+IG  + K  + + L + +  P+M   
Sbjct: 122 GIESGFRNAVAPADEAIV-VTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKK 180

Query: 476 NDNMS 480
            D +S
Sbjct: 181 GDMLS 185


>gnl|CDD|163044 TIGR02860, spore_IV_B, stage IV sporulation protein B.  SpoIVB, the
           stage IV sporulation protein B of endospore-forming
           bacteria such as Bacillus subtilis, is a serine
           proteinase, expressed in the spore (rather than mother
           cell) compartment, that participates in a proteolytic
           activation cascade for Sigma-K. It appears to be
           universal among endospore-forming bacteria and occurs
           nowhere else.
          Length = 402

 Score = 32.7 bits (75), Expect = 0.23
 Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 315 KESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSK 367
             SP ++AG+++GD I  ++G  IK+  D    + +++  E++ +++ + G  
Sbjct: 122 IHSPGEEAGIQIGDRILKINGEKIKNMDDLA-NLINKAGGEKLTLTIERGGKI 173


>gnl|CDD|161775 TIGR00225, prc, C-terminal peptidase (prc).  A C-terminal peptidase
           with different substrates in different species including
           processing of D1 protein of the photosystem II reaction
           center in higher plants and cleavage of a peptide of 11
           residues from the precursor form of penicillin-binding
           protein in E.coli E.coli and H influenza have the most
           distal branch of the tree and their proteins have an
           N-terminal 200 amino acids that show no homology to
           other proteins in the database.
          Length = 334

 Score = 31.9 bits (73), Expect = 0.35
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 309 LITAVVKESPADKAGMKVGDVICMLDG 335
           +I +  + SPA+KAG+K GD I  ++G
Sbjct: 65  VIVSPFEGSPAEKAGIKPGDKIIKING 91


>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease;
           Provisional.
          Length = 389

 Score = 31.6 bits (72), Expect = 0.46
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 295 ELAIPLGLRGTKGSL-ITAVVKESPADKAGMKVGDVICMLDGR 336
           E+  P G  G    L + A     PA +AG++ GDVI  +DG 
Sbjct: 90  EVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGT 132


>gnl|CDD|169409 PRK08374, PRK08374, homoserine dehydrogenase; Provisional.
          Length = 336

 Score = 30.9 bits (70), Expect = 0.83
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 98  EPILSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTEL------PAK-LV 150
           E +L DTV+R+            +ILT    +E G +F   L +   L      P+K + 
Sbjct: 162 ENLLGDTVKRI---EAVVNATTTFILTR---MEQGKTFEEALKEAQTLGIAERDPSKDID 215

Query: 151 GTDALFDLAVLKVQSDRKFIPVEFEDAN-----NIRVGEA--VFTIGNPFRLRGTVSAGI 203
           G DA +   +L   +   F P+ FE+       ++  GE       G   RL  TV  G 
Sbjct: 216 GIDAGYKATILHWVA---FPPITFEEVGIRGIKDVTEGEIERAKAKGRNVRLVATVEEGR 272

Query: 204 VSALDRDIPD 213
           +S   + +P+
Sbjct: 273 ISVKPKKLPE 282


>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
           fusion protein; Provisional.
          Length = 906

 Score = 30.1 bits (68), Expect = 1.2
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 432 TIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGN 476
            +V  N+ +      +ER +   +E  R   LL+  Y+P     +
Sbjct: 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238


>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
          Length = 586

 Score = 30.1 bits (69), Expect = 1.3
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 160 VLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNP 192
           +++++ D+  I V +E+ + I+ GE V   G P
Sbjct: 40  IIRIEGDKATIQV-YEETSGIKPGEPVEFTGEP 71


>gnl|CDD|151032 pfam10459, Peptidase_S46, Peptidase S46.  Dipeptidyl-peptidase 7
           (DPP-7) is the best characterized member of this family.
           It is a serine peptidase that is located on the cell
           surface and is predicted to have two N-terminal
           transmembrane domains.
          Length = 696

 Score = 30.3 bits (69), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 228 GNSGGPCFNALGHVIGVN 245
           GNSG P  N  G ++G+ 
Sbjct: 631 GNSGSPVLNGKGELVGLA 648


>gnl|CDD|182074 PRK09784, PRK09784, hypothetical protein; Provisional.
          Length = 417

 Score = 29.6 bits (66), Expect = 1.9
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 314 VKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVV 373
           +K +P D      GD  C+L   ++    D+ W + S   +++V     K   K ++  +
Sbjct: 200 LKYAPVD------GDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKQTIEAL 253

Query: 374 LGSSPTAKNDMHLEVGDKELLGMVLQDIN 402
           +    TA  ++  +V  K L G+ LQ  N
Sbjct: 254 VD---TAFYNLREDV--KTLFGVDLQSDN 277


>gnl|CDD|149458 pfam08404, Baculo_p74_N, Baculoviridae P74 N-terminal.  This domain
           is found at the N-terminus of P74 occlusion-derived
           virus (ODV) envelope proteins which are required for
           oral infectivity. The envelope proteins are found in
           baculoviruses which are insect pathogens. The C-terminus
           of P74 is anchored to the membrane whereas the
           N-terminus is exposed to the virion surface. Furthermore
           P74 is unusual for a virus envelope protein as it lacks
           an N-terminal localisation signal sequence. Also see
           pfam04583.
          Length = 301

 Score = 28.8 bits (65), Expect = 3.2
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 100 ILSDTVERLMFGSGFFITDDGYILTSNHI---VEDGASFSVILSDDTELPAKLVGT 152
           IL D+  ++   S        Y+ T  H+   V+D   F+V    D   P +  GT
Sbjct: 135 ILVDSFTKMYMNSP-------YLRTDEHLIRGVDDVPGFNVEPDTDPLFPERFKGT 183


>gnl|CDD|164900 PHA02107, PHA02107, hypothetical protein.
          Length = 216

 Score = 28.8 bits (64), Expect = 3.4
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 14/69 (20%)

Query: 125 SNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDANNI---- 180
           SNH+V    +FSV L +  + P K V T          V +     P +  D  NI    
Sbjct: 117 SNHVV----TFSVDLPNGDKAPVKNVETKT------EVVSTVDYTEPAKEPDGQNIFFAP 166

Query: 181 RVGEAVFTI 189
              +AV  +
Sbjct: 167 ETMKAVQLV 175


>gnl|CDD|165191 PHA02854, PHA02854, putative host range protein; Provisional.
          Length = 178

 Score = 28.3 bits (63), Expect = 5.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 20  VIFSSTYLVLEAKLPPSSVDLPPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPED 79
           V++S+++ +          D P     + P  V++ V PKKK  V    N Y F   P D
Sbjct: 83  VVYSASFSINSDSYVKVFSDNPDKYKHMYP-TVTINV-PKKKFKVVDQGNTYMFIQSPID 140

Query: 80  HPLKNYFRKDFHKFFSGEE 98
              K  F KD  +++  + 
Sbjct: 141 DCDKEQFLKDEFEYYDSDN 159


>gnl|CDD|180936 PRK07334, PRK07334, threonine dehydratase; Provisional.
          Length = 403

 Score = 28.3 bits (64), Expect = 5.1
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 195 LRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGG 232
           LRG V AG ++ L  DI DRPG   ++ A I  G +G 
Sbjct: 317 LRGLVRAGRLARLRVDIRDRPGALARVTALI--GEAGA 352


>gnl|CDD|130430 TIGR01363, strep_his_triad, streptococcal histidine triad protein. 
           This model represents the N-terminal half of a family of
           Streptococcal proteins that contain a signal peptide and
           then up to five repeats of a region that includes a
           His-X-X-His-X-His (histidine triad) motif. Three repeats
           are found in the seed alignment. Members of this family
           from Streptococcus pneumoniae are suggested to cleave
           human C3, and the member PhpA has been shown in vaccine
           studies to be a protective antigen in mice.
          Length = 348

 Score = 28.0 bits (62), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 113 GFFITDDGYILTSNHIVED 131
           G + TDDGYI  ++ I+ED
Sbjct: 181 GRYTTDDGYIFNASDIIED 199


>gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated.
          Length = 397

 Score = 27.6 bits (62), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 191 NPFRLRG--TVSAGIVSALDRDIPDR 214
           NPFRL G  T+   I   L  ++PDR
Sbjct: 195 NPFRLEGQKTIGFEIADQLGWEVPDR 220


>gnl|CDD|151593 pfam11150, DUF2927, Protein of unknown function (DUF2927).  This
           family is conserved in Proteobacteria. Several members
           are described as being putative lipoproteins, but
           otherwise the function is not known.
          Length = 212

 Score = 27.6 bits (62), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 460 DSVLLQIKYDPDMQSGNDNMSR 481
           D +LL+  YDP ++ G   M+R
Sbjct: 184 DELLLRALYDPRLRPG---MTR 202


>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
           Provisional.
          Length = 672

 Score = 27.2 bits (61), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)

Query: 294 QELAIPLGLRGT----KGSLITA 312
           + LA  LG++GT    KG LI A
Sbjct: 32  RALAKQLGIKGTSGMRKGELIAA 54


>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
          Length = 691

 Score = 27.1 bits (61), Expect = 9.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 15/45 (33%)

Query: 27  LVLEAKLPPSSVDLP-PVIARVSPSIVSVMVEPKKKVSVEQMFNA 70
           ++LE      S++ P PVI        S+ VEPK K   ++M  A
Sbjct: 394 IILE------SMEFPEPVI--------SLAVEPKTKADQDKMGLA 424


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,921,859
Number of extensions: 526620
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 38
Length of query: 489
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,898,497
Effective search space: 1528210824
Effective search space used: 1528210824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)