HHsearch alignment for GI: 254780701 and conserved domain: COG0642
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.97 E-value=7.8e-28 Score=257.51 Aligned_cols=219 Identities=37% Similarity=0.584 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200-15653101
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGR-YELSESAI 326 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~-~~l~~~~v 326 (495)
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGL-----LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELV 188 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9999999998885897999999999974146-----52599999999999999999999999999764457442234645
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 19999999999999999731122100036761010479899998877765568860679887999999976985999998
Q gi|254780701|r 327 SLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 327 ~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~-~~~i~i~V~ 265 (336)
T COG0642 189 DLAELLEEVVRLLAPLAQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQD-DEQVTISVE 265 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEC-CCEEEEEEE
T ss_conf 59999999999999876634848998237-6607860788999999999998998668-98599999963-877999998
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf 789978987854422652315777678999888058999999996198599997989952988984724707
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~ 478 (495)
T Consensus 266 D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~~~ 333 (336)
T COG0642 266 DTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAA 333 (336)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 07899798899988188634799989----886329999999998799899950799977999998477655