HHsearch alignment for GI: 254780701 and conserved domain: COG0643
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.51 E-value=1.4e-11 Score=118.09 Aligned_cols=170 Identities=16% Similarity=0.257 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHH--
Q ss_conf 999999999999999999874220015653101199999999999999997311221000367610104798999988--
Q gi|254780701|r 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV-- 371 (495)
Q Consensus 294 i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qv-- 371 (495)
T Consensus 366 l~~~~~~l~~~~~~LQ------d~vm~~RMvP--~~~vf~RfpR~VRdla~~lgK~V~L~ieG~--~telDksIlE~l~d 435 (716)
T COG0643 366 LDEALRQLSRLTTDLQ------DEVMKIRMVP--FEQVFSRFPRMVRDLARKLGKQVELVIEGE--DTELDKSILERLGD 435 (716)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHCEE--HHHHHHHCCHHHHHHHHHHCCEEEEEEECC--CEEEHHHHHHHHCC
T ss_conf 9999999999999999------9999970003--999874440999999998699169999648--71342989988646
Q ss_pred -HHHHHHHHHHCC------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------------------
Q ss_conf -777655688606------------7988799999997698599999878997898785---------------------
Q gi|254780701|r 372 -ILNLLSNAVKFT------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI--------------------- 417 (495)
Q Consensus 372 -l~NLi~NAiK~T------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~--------------------- 417 (495)
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~-~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH-EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred CHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCHH
T ss_conf 6998885001105898899987598986369999983-798699999568998799999999998299886775207999
Q ss_pred ---HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf ---4422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 418 ---PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 418 ---~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
T Consensus 515 Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 515 EILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred HHHHHHHCCCCCCCHHH-HCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf 99988736998734111-0165776578999999997399899996278976999966879