HHsearch alignment for GI: 254780701 and conserved domain: COG0643

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.51  E-value=1.4e-11  Score=118.09  Aligned_cols=170  Identities=16%  Similarity=0.257  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHH--
Q ss_conf             999999999999999999874220015653101199999999999999997311221000367610104798999988--
Q gi|254780701|r  294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV--  371 (495)
Q Consensus       294 i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qv--  371 (495)
T Consensus       366 l~~~~~~l~~~~~~LQ------d~vm~~RMvP--~~~vf~RfpR~VRdla~~lgK~V~L~ieG~--~telDksIlE~l~d  435 (716)
T COG0643         366 LDEALRQLSRLTTDLQ------DEVMKIRMVP--FEQVFSRFPRMVRDLARKLGKQVELVIEGE--DTELDKSILERLGD  435 (716)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHCEE--HHHHHHHCCHHHHHHHHHHCCEEEEEEECC--CEEEHHHHHHHHCC
T ss_conf             9999999999999999------9999970003--999874440999999998699169999648--71342989988646


Q ss_pred             -HHHHHHHHHHCC------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------------------
Q ss_conf             -777655688606------------7988799999997698599999878997898785---------------------
Q gi|254780701|r  372 -ILNLLSNAVKFT------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI---------------------  417 (495)
Q Consensus       372 -l~NLi~NAiK~T------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~---------------------  417 (495)
T Consensus       436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~-~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~  514 (716)
T COG0643         436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH-EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE  514 (716)
T ss_pred             CHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCHH
T ss_conf             6998885001105898899987598986369999983-798699999568998799999999998299886775207999


Q ss_pred             ---HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             ---4422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r  418 ---PTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       418 ---~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
T Consensus       515 Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT  574 (716)
T COG0643         515 EILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT  574 (716)
T ss_pred             HHHHHHHCCCCCCCHHH-HCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf             99988736998734111-0165776578999999997399899996278976999966879