HHsearch alignment for GI: 254780701 and conserved domain: COG2205
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=5.2e-43 Score=387.62 Aligned_cols=236 Identities=31% Similarity=0.518 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988999997764201389999999998503368789378999999999999999999999999987
Q gi|254780701|r 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSR 313 (495)
Q Consensus 234 ~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsr 313 (495)
T Consensus 646 ~~~~a~l~~e-~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~-~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTR 723 (890)
T COG2205 646 EAEQARLAAE-RERLRSALLASISHDLRTPLTAIMGAAETLLLDG-EALSPEDRAELLSSIREESERLTRLVTNLLDMTR 723 (890)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999-9999999998741024672898861488864234-0159376999999999999999999998776777
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 42200156531011999999999999999973112210003676101047989999887776556886067988799999
Q gi|254780701|r 314 IEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTV 393 (495)
Q Consensus 314 leag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~ 393 (495)
T Consensus 724 i~sG~~~l~~~~~~veEvVg~Al~r~~k~~~--~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~ 801 (890)
T COG2205 724 LQSGGVNLKLDWVLVEEVVGEALQRLRKRFT--GHKIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINA 801 (890)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7137864144520399999999998663047--83589955888716764788999999999987874289997699999
Q ss_pred EEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 99769859999987899789878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 394 GWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 394 ~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
T Consensus 802 ~~-~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP 878 (890)
T COG2205 802 GV-ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLP 878 (890)
T ss_pred EE-ECCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 98-245699999718999885678876465414888778--887662299999999974886898776999358999940
Q ss_pred HHH
Q ss_conf 247
Q gi|254780701|r 474 NTR 476 (495)
Q Consensus 474 ~~~ 476 (495)
T Consensus 879 ~~~ 881 (890)
T COG2205 879 VEE 881 (890)
T ss_pred CCC
T ss_conf 688