HHsearch alignment for GI: 254780701 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.18 E-value=3.2e-06 Score=72.19 Aligned_cols=133 Identities=24% Similarity=0.279 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEE--CCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEE
Q ss_conf 310119999999999999999731122100--0367610104798999988777655688606----7988799999997
Q gi|254780701|r 323 ESAISLIDIVRECIIMLQLRAQEKNIEIFQ--KIDPSLSSVWADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWT 396 (495)
Q Consensus 323 ~~~v~L~~li~~~~~~~~~~A~~~~~~l~~--~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T----~~gG~V~v~~~~~ 396 (495)
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~-~iP~fi---lQPLVENAIKHG~~~~~~~g~V~I~V~~- 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV-QIPSFI---LQPLVENAIKHGISQLKDTGRVTISVEK- 488 (557)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-CCCHHH---HHHHHHHHHHHCCCCHHCCCCEEEEEEE-
T ss_conf 15865599999999999899864488447999468777533-686166---7788888887536444208817999998-
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEC
Q ss_conf 6985999998789978987854422652315777678999888058999999996198---5999979899529889847
Q gi|254780701|r 397 SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGG---QFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 397 ~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG---~i~v~S~~G~Gt~f~v~LP 473 (495)
T Consensus 489 ~d~~l~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp 550 (557)
T COG3275 489 EDADLRIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLP 550 (557)
T ss_pred ECCEEEEEEECCCCCCCCC------------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 0883899994188776997------------------7889871788999999986482103137861677868999944
Q ss_pred HHHCC
Q ss_conf 24707
Q gi|254780701|r 474 NTRVL 478 (495)
Q Consensus 474 ~~~~~ 478 (495)
T Consensus 551 ~~~~~ 555 (557)
T COG3275 551 LQRTA 555 (557)
T ss_pred CCCCC
T ss_conf 76556