HHsearch alignment for GI: 254780701 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=99.87 E-value=3.1e-19 Score=183.75 Aligned_cols=193 Identities=19% Similarity=0.325 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 99977642013899999999985033687893789999999999999999999999999874220015653101199999
Q gi|254780701|r 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 (495)
Q Consensus 253 lA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li 332 (495)
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~--------yd~a~~~I~~---~~~~qq~~~~~l~~~i~---------------~~~l 390 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGE--------YDDALDYIQQ---ESEEQQELIDSLSEKIK---------------DPVL 390 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHH---HHHHHHHHHHHHHHHCC---------------CHHH
T ss_conf 98852888888999987885053--------7899999999---87640456899998512---------------0888
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCHH--CCCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEEECCCEEEEEEEE
Q ss_conf 9999999999973112210003676101--047989999887776556886067---98879999999769859999987
Q gi|254780701|r 333 RECIIMLQLRAQEKNIEIFQKIDPSLSS--VWADEKGMRQVILNLLSNAVKFTA---IGGRVHVTVGWTSGRGQYISIKD 407 (495)
Q Consensus 333 ~~~~~~~~~~A~~~~~~l~~~~~~~~~~--v~~D~~~L~qvl~NLi~NAiK~T~---~gG~V~v~~~~~~~~~~~i~V~D 407 (495)
T Consensus 391 Ag~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~-~~~~~lvieV~D 469 (537)
T COG3290 391 AGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS-DRGDELVIEVAD 469 (537)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCCEEEEEEEC
T ss_conf 9998868999997296599757986788987667678999999988778888515578967999998-369879999957
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 8997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 408 tG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
T Consensus 470 ~G~GI~~~~~~~iFe~G~S-----tk~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~ 534 (537)
T COG3290 470 TGPGIPPEVRDKIFEKGVS-----TKNTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKE 534 (537)
T ss_pred CCCCCCHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 9999896887778734841-----4677887612889999998749669995078981499998888766