HHsearch alignment for GI: 254780701 and conserved domain: COG3850
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=99.62 E-value=4.7e-10 Score=105.06 Aligned_cols=193 Identities=22% Similarity=0.321 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9977642013899999999----985033687893789999999999999999999999999874220015653101199
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSE----VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~e----lL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~ 329 (495)
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~-~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~ 445 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTA-IPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELP 445 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHH
T ss_conf 9999987789999999999999999842-786566879999999999999999999999998787-------60567638
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC
Q ss_conf 99999999999999731122100036761010479-89999887776556886067988799999997698599999878
Q gi|254780701|r 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 330 ~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt 408 (495)
T Consensus 446 ~AL~~~~~~f~---~qtg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~-~~g~~~~~VeDn 520 (574)
T COG3850 446 PALEQMLAEFS---NQTGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQ-NDGQVTLTVEDN 520 (574)
T ss_pred HHHHHHHHHHH---HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEE-CCCEEEEEEEEC
T ss_conf 99999999997---346973887256898899878999999999999998998526-6758999986-596489999428
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
T Consensus 521 G~Gi~~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~~~~ 571 (574)
T COG3850 521 GVGIDEAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPPEEN 571 (574)
T ss_pred CCCCCCCC-----------------CCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 83779756-----------------7788-723699999999725757776459998179999564134