HHsearch alignment for GI: 254780701 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=99.97 E-value=8.3e-29 Score=265.88 Aligned_cols=213 Identities=24% Similarity=0.416 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l----pd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~N 202 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERAL----PDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVN 202 (363)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCH
T ss_conf 9999998778872285310144999997458----9867789999999999999999999875087----8985535431
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCC----CCCEEEEEEEE----E-CC
Q ss_conf 999999999999999973112210003676101047989999887776556886067----98879999999----7-69
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTA----IGGRVHVTVGW----T-SG 398 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~----~gG~V~v~~~~----~-~~ 398 (495)
T Consensus 203 IH~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g 281 (363)
T COG3852 203 IHEVLERVRALVEAEF-ADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAG 281 (363)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEECCC
T ss_conf 9999999999985436-775588502799885323698999999999999999971677877856999722425887167
Q ss_pred C----EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf 8----599999878997898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 399 R----GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 399 ~----~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
T Consensus 282 ~r~rl~l~leViDNGPGVP~~L~~~lF~P~V------s~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~ 354 (363)
T COG3852 282 TRYRLALPLEVIDNGPGVPPDLQDHLFYPMV------SGREGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPI 354 (363)
T ss_pred CEEEEEEEEEEECCCCCCCHHHHHHCCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC-EEEEEEEEC
T ss_conf 4246631169861899998678643002302------068898661489999989852978987426894-589998633
Q ss_pred HH
Q ss_conf 47
Q gi|254780701|r 475 TR 476 (495)
Q Consensus 475 ~~ 476 (495)
T Consensus 355 ~~ 356 (363)
T COG3852 355 RK 356 (363)
T ss_pred CC
T ss_conf 54