HHsearch alignment for GI: 254780701 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.37 E-value=2.4e-09 Score=99.05 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495)
T Consensus 19 ~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~----~~~-~~e~~~---~~-------~~Ri~sla~~He~L~~s~~~~~~~ 83 (221)
T COG3920 19 KELLLREIHHRVKNNLQIISSLLRLQARKF----EDE-VLEALR---ES-------QNRIQSLALIHELLYKSGDDTWDF 83 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCH-HHHHHH---HH-------HHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 999999999998879999999999777523----667-899999---99-------889999999999980688651759
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCC---CCEEEEEEEEECCC-EEEE
Q ss_conf 999999999999999731122100036761010479-899998877765568860679---88799999997698-5999
Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAI---GGRVHVTVGWTSGR-GQYI 403 (495)
Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~---gG~V~v~~~~~~~~-~~~i 403 (495)
T Consensus 84 ~~y~~~L~~~l~~~~~~~~~~~~~~~~~~-~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l 162 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPN-VFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLL 162 (221)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCC-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 99999999998876278875278822886-22673678899999999999889861788899779999998479971799
Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 9987899789878544226523157776789998880589999999-9619859999798995298898472470
Q gi|254780701|r 404 SIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIM-ANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 404 ~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lv-e~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
T Consensus 163 ~v~deg~G~~~~~~----------------~-~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~~ 218 (221)
T COG3920 163 TVWDEGGGPPVEAP----------------L-SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSEA 218 (221)
T ss_pred EEEECCCCCCCCCC----------------C-CCCCCHHHHHHHHHHHHCCCEEEEECCC--CEEEEEEEECCCC
T ss_conf 99878989888888----------------7-8998379999999999679727997499--7799999886443