HHsearch alignment for GI: 254780701 and conserved domain: COG4564

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=98.97  E-value=8.5e-06  Score=68.60  Aligned_cols=184  Identities=21%  Similarity=0.295  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHH
Q ss_conf             2013899999999985033687893789999999999999999999999999874220015653101---1999999999
Q gi|254780701|r  260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI---SLIDIVRECI  336 (495)
Q Consensus       260 LRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v---~L~~li~~~~  336 (495)
T Consensus       262 IsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~  330 (459)
T COG4564         262 ISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALL  330 (459)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH
T ss_conf             7777799999999996267799888-----750156678999989999998502------35745554430799999999


Q ss_pred             HHHHHHHHHCCCCCEECCCCCCHHCCCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH
Q ss_conf             9999999731122100036761010479--89999887776556886067988799999997698599999878997898
Q gi|254780701|r  337 IMLQLRAQEKNIEIFQKIDPSLSSVWAD--EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE  414 (495)
Q Consensus       337 ~~~~~~A~~~~~~l~~~~~~~~~~v~~D--~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~  414 (495)
T Consensus       331 ~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~A-trv~ill~~-~~d~vql~vrDnG~GF~~  404 (459)
T COG4564         331 EDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGA-TRVTILLQQ-MGDMVQLMVRDNGVGFSV  404 (459)
T ss_pred             HHHH---HCCCEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECC-CCCCEEEEEECCCCCCCC
T ss_conf             9864---36683799970578-64478278889999999998778860687-179998615-776069998238998561


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf             785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r  415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV  477 (495)
Q Consensus       415 e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~  477 (495)
T Consensus       405 ~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~~  450 (459)
T COG4564         405 KEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDAS  450 (459)
T ss_pred             HHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECCHHH
T ss_conf             65316----------------7556451009999997486589975698-7279998140466