HHsearch alignment for GI: 254780701 and conserved domain: COG4564
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=98.97 E-value=8.5e-06 Score=68.60 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHH
Q ss_conf 2013899999999985033687893789999999999999999999999999874220015653101---1999999999
Q gi|254780701|r 260 LRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAI---SLIDIVRECI 336 (495)
Q Consensus 260 LRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v---~L~~li~~~~ 336 (495)
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~ 330 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALL 330 (459)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH
T ss_conf 7777799999999996267799888-----750156678999989999998502------35745554430799999999
Q ss_pred HHHHHHHHHCCCCCEECCCCCCHHCCCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCH
Q ss_conf 9999999731122100036761010479--89999887776556886067988799999997698599999878997898
Q gi|254780701|r 337 IMLQLRAQEKNIEIFQKIDPSLSSVWAD--EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 (495)
Q Consensus 337 ~~~~~~A~~~~~~l~~~~~~~~~~v~~D--~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~ 414 (495)
T Consensus 331 ~~f~---~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~A-trv~ill~~-~~d~vql~vrDnG~GF~~ 404 (459)
T COG4564 331 EDFK---ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGA-TRVTILLQQ-MGDMVQLMVRDNGVGFSV 404 (459)
T ss_pred HHHH---HCCCEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECC-CCCCEEEEEECCCCCCCC
T ss_conf 9864---36683799970578-64478278889999999998778860687-179998615-776069998238998561
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 415 e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
T Consensus 405 ~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~~ 450 (459)
T COG4564 405 KEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDAS 450 (459)
T ss_pred HHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEEECCHHH
T ss_conf 65316----------------7556451009999997486589975698-7279998140466