HHsearch alignment for GI: 254780701 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=1.2e-42 Score=384.63 Aligned_cols=232 Identities=28% Similarity=0.444 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999889999977642013899999999985033687893789999999999999999999999999874220015653
Q gi|254780701|r 244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE 323 (495)
Q Consensus 244 ~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~ 323 (495)
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~--d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~ 297 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWE--DKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNK 297 (459)
T ss_pred HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8899999998861403147367899999997468744--71232689987478899999999999877257632566657
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC-CEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 10119999999999999999731122-10003676101047989999887776556886067988799999997698599
Q gi|254780701|r 324 SAISLIDIVRECIIMLQLRAQEKNIE-IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY 402 (495)
Q Consensus 324 ~~v~L~~li~~~~~~~~~~A~~~~~~-l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~ 402 (495)
T Consensus 298 e~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~-~~~~v~ 376 (459)
T COG5002 298 EWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ-RETWVE 376 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-ECCEEE
T ss_conf 8887488999999999998756778899960888864899670689999999987775248999739999963-075899
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf 9998789978987854422652315777678999888058999999996198599997989952988984724707
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~ 478 (495)
T Consensus 377 iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~~ 452 (459)
T COG5002 377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA 452 (459)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 9974688899840689999988522366540378776129999999997098577760458861799995466766