HHsearch alignment for GI: 254780701 and conserved domain: COG5385
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=94.24 E-value=0.54 Score=27.42 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 99997764201389999999998503368789378999999999999999999999999987422001565310119999
Q gi|254780701|r 252 FLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDI 331 (495)
Q Consensus 252 FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~l 331 (495)
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~---ad----dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea 86 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGG---AD----DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA 86 (214)
T ss_pred HHHHHHHHCCCCHHHHHCHHHHHCCCC---CC----HHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 999887540481777603256642689---64----789999999765178----8877889872555543335660669
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCC
Q ss_conf 99999999999973112210003676101047989999887776556886067988799999997698599999878997
Q gi|254780701|r 332 VRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 (495)
Q Consensus 332 i~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~G 411 (495)
T Consensus 87 e-k~A~~~~--a~ek-pe~~W~g~r~--~~~Kn~---vkllLNl~lia~~aiPrGG~~~vtle~-~e~d~rfsi~akG~m 156 (214)
T COG5385 87 E-KAAQDFF--ANEK-PELTWNGPRA--ILPKNR---VKLLLNLFLIAYGAIPRGGSLVVTLEN-PETDARFSIIAKGRM 156 (214)
T ss_pred H-HHHHHHH--HCCC-CCCCCCCCHH--HCCCCH---HHHHHHHHHHHCCCCCCCCEEEEEEEC-CCCCCEEEEEECCCC
T ss_conf 9-9999998--6238-7123558742--247505---899999999970557889826899536-776743899832753
Q ss_pred --CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf --89878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 412 --IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 412 --I~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
T Consensus 157 ~Rvppk~lel~-----~G~~~-eE~vdahsVQpyYt~lLa~eAgm~I~v~~~-~e~iv~~A~v~ 213 (214)
T COG5385 157 MRVPPKFLELH-----SGEPP-EEAVDAHSVQPYYTLLLAEEAGMTISVHAT-AERIVFTAWVV 213 (214)
T ss_pred CCCCHHHHHHH-----CCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CCEEEEEEECC
T ss_conf 44798998650-----59984-224787530399999999970986899963-64379997514