HHsearch alignment for GI: 254780701 and conserved domain: PRK05559
>PRK05559 DNA topoisomerase IV subunit B; Reviewed.
Probab=93.51 E-value=0.017 Score=40.41 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCC-----CCHHHHHHHCCCCCCCCCCCC---CC
Q ss_conf 7989999887776556886067988799999997698599999878997-----898785442265231577767---89
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG-----IAEGEIPTVLTSFGQGSIAIK---SA 434 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~G-----I~~e~~~~iF~~F~r~~~~~~---~~ 434 (495)
T Consensus 498 ~DGsHI~~Llltff~~~~p~Li~~G~vy~~~t----Pl--~kv~-~gk~~~~y~~~e~e~~~~~~~~~~~~~~~k~~i~r 570 (633)
T PRK05559 498 VDGAHIATLLLTFFYRHFPPLVEAGHVYIALP----PL--YRVD-VGKGKTFYALDEEEKEELLKKLGKGGKKGKVEIQR 570 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC----CE--EEEE-ECCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 97688999999999987699886595899739----88--9999-38943698588999999999864115778703687
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 9988805899999999
Q gi|254780701|r 435 EQGVGLGLPIAQSIMA 450 (495)
Q Consensus 435 ~~GtGLGLaIvk~lve 450 (495)
T Consensus 571 yK--GLGem~~~ql~e 584 (633)
T PRK05559 571 FK--GLGEMNPDQLWE 584 (633)
T ss_pred EE--ECCCCCHHHHHH
T ss_conf 64--067799899998