HHsearch alignment for GI: 254780701 and conserved domain: PRK09835
>PRK09835 sensor kinase CusS; Provisional.
Probab=100.00 E-value=0 Score=424.23 Aligned_cols=242 Identities=21% Similarity=0.322 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
T Consensus 240 El~~La~~fN~M~~rl~~~~~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~---~~~~~~~~~l~~~~~e~~rl~~lv~ 316 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQS---RSQKELEDVLYSNLEELTRMAKMVS 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999999999999999988987189999999999985389---9869999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999874220015653101199999999999999997311221000367610104798999988777655688606798
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIG 386 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~g 386 (495)
T Consensus 317 ~lL~lar~e~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NAikys~~g 394 (482)
T PRK09835 317 DMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNALRYTPEG 394 (482)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987743588766673456999999999999999986892899827--870899879999999999999999848999
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999976985999998789978987854422652315777678999888058999999996198599997989952
Q gi|254780701|r 387 GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGV 466 (495)
Q Consensus 387 G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt 466 (495)
T Consensus 395 ~~i~i~~~~-~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt 472 (482)
T PRK09835 395 EAIVVRCQT-VDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGT 472 (482)
T ss_pred CEEEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCE
T ss_conf 869999998-29989999996587889899987667975189888899994648999999999982998999963-9918
Q ss_pred EEEEEECHH
Q ss_conf 988984724
Q gi|254780701|r 467 EVIAILPNT 475 (495)
Q Consensus 467 ~f~v~LP~~ 475 (495)
T Consensus 473 ~f~i~lPr~ 481 (482)
T PRK09835 473 RFVISLPRL 481 (482)
T ss_pred EEEEEEECC
T ss_conf 999993078