HHsearch alignment for GI: 254780701 and conserved domain: PRK10600
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional.
Probab=99.70 E-value=8.9e-13 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
T Consensus 361 ER~~IARELHDslaQ~Ls~Lkiq~~~l~~~~--~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~-------~l~~~~ 431 (569)
T PRK10600 361 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQIRNELNASWAQLRELLTTFRL-------QLTEPG 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCC
T ss_conf 9999999988887222789999999999730--5798889999999999999999999999998355-------777566
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 9999999999999999731122100036761010479-899998877765568860679887999999976985999998
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWAD-EKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D-~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
T Consensus 432 l~~aL~~~i~~~~~---~~g~~i~l~~~~~~~~l~~~~~i~l~rIvqEALsNv~KHA~A-~~v~V~l~~-~~~~~~l~I~ 506 (569)
T PRK10600 432 LRPALEASCEEFSA---RFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQA-SEVVVTVAQ-NDNQVKLSVQ 506 (569)
T ss_pred HHHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEE-CCCEEEEEEE
T ss_conf 79999999999997---609779999558866798789999999999999999970899-879999997-6998999998
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCCCCC
Q ss_conf 789978987854422652315777678999888058999999996198599997989952988984724707469
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVLNFI 481 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~~~~ 481 (495)
T Consensus 507 DdG~Gf~~~------------------~~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~P~~~~~~~ 563 (569)
T PRK10600 507 DNGCGVPEN------------------AERSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFIPEKTFTDV 563 (569)
T ss_pred ECCCCCCCC------------------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 899898988------------------888999781599999997699899986699958999997589887413