HHsearch alignment for GI: 254780701 and conserved domain: PRK10755

>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00  E-value=1.4e-43  Score=392.48  Aligned_cols=233  Identities=21%  Similarity=0.336  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r  227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN  306 (495)
Q Consensus       227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~  306 (495)
T Consensus       121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-----~~----~~~~~~~i~rl~~li~  191 (355)
T PRK10755        121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH-----ID----VAPLIARLDQMMHSVS  191 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----CC----HHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999997577740389999999999737575-----31----9999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999998742200156531011-9999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r  307 EILDLSRIEAGRYELSESAIS-LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI  385 (495)
Q Consensus       307 ~lLdlsrleag~~~l~~~~v~-L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~  385 (495)
T Consensus       192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~  271 (355)
T PRK10755        192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE  271 (355)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999858886434544213259999999999999999975995999658877189968999999999999989974899


Q ss_pred             CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf             88799999997698599999878997898785442265231577767899988805899999999619859999798-99
Q gi|254780701|r  386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-RE  464 (495)
Q Consensus       386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~-G~  464 (495)
T Consensus       272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg  345 (355)
T PRK10755        272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS  345 (355)
T ss_pred             CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             976999999-7-79889999987999897999885588613899----99987589999999999919989999879898


Q ss_pred             CEEEEEEECH
Q ss_conf             5298898472
Q gi|254780701|r  465 GVEVIAILPN  474 (495)
Q Consensus       465 Gt~f~v~LP~  474 (495)
T Consensus       346 Gt~~~v~LPk  355 (355)
T PRK10755        346 GTRAWVWLKK  355 (355)
T ss_pred             EEEEEEEECC
T ss_conf             7899999479