HHsearch alignment for GI: 254780701 and conserved domain: PRK10755
>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00 E-value=1.4e-43 Score=392.48 Aligned_cols=233 Identities=21% Similarity=0.336 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r 227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN 306 (495)
Q Consensus 227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~ 306 (495)
T Consensus 121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-----~~----~~~~~~~i~rl~~li~ 191 (355)
T PRK10755 121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHH-----ID----VAPLIARLDQMMHSVS 191 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-----CC----HHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999997577740389999999999737575-----31----9999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998742200156531011-9999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r 307 EILDLSRIEAGRYELSESAIS-LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 307 ~lLdlsrleag~~~l~~~~v~-L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
T Consensus 192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~ 271 (355)
T PRK10755 192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE 271 (355)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999858886434544213259999999999999999975995999658877189968999999999999989974899
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798-99
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-RE 464 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~-G~ 464 (495)
T Consensus 272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg 345 (355)
T PRK10755 272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS 345 (355)
T ss_pred CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 976999999-7-79889999987999897999885588613899----99987589999999999919989999879898
Q ss_pred CEEEEEEECH
Q ss_conf 5298898472
Q gi|254780701|r 465 GVEVIAILPN 474 (495)
Q Consensus 465 Gt~f~v~LP~ 474 (495)
T Consensus 346 Gt~~~v~LPk 355 (355)
T PRK10755 346 GTRAWVWLKK 355 (355)
T ss_pred EEEEEEEECC
T ss_conf 7899999479