HHsearch alignment for GI: 254780701 and conserved domain: PRK10935
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.79 E-value=4.9e-15 Score=147.82 Aligned_cols=193 Identities=20% Similarity=0.255 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 9977642013899999999----985033687893789999999999999999999999999874220015653101199
Q gi|254780701|r 254 ASMSHELRTPLNAILGFSE----VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLI 329 (495)
Q Consensus 254 A~~SHELRTPL~aI~g~~e----lL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~ 329 (495)
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl-------~l~~~~L~ 438 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRL-------TIQEANLG 438 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHH
T ss_conf 89999844126657899999999999874225653889999999999999999999999998322-------67756879
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHH---HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 9999999999999973112210003676101047989---9998877765568860679887999999976985999998
Q gi|254780701|r 330 DIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK---GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIK 406 (495)
Q Consensus 330 ~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~---~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~ 406 (495)
T Consensus 439 ~AL~~~~~~~~~---q~~~~i~l~~~l--~~~~l~~~~~i~llrIvqEALtN~~KHA~A-~~V~V~~~~~~~~~v~l~V~ 512 (568)
T PRK10935 439 SALEEMLDQLRN---QTSAKITLDCRL--PSQALDAQQQVHLLQIIREATLNAIKHANA-SEIAVSCVTNPDGEVTVSIR 512 (568)
T ss_pred HHHHHHHHHHHH---HCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCEEEEEEE
T ss_conf 999999999975---119469997068--877788889999999999999999980899-87999999748987999997
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHC
Q ss_conf 78997898785442265231577767899988805899999999619859999798995298898472470
Q gi|254780701|r 407 DNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRV 477 (495)
Q Consensus 407 DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~ 477 (495)
T Consensus 513 DnG~Gf~~~~------------------~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~~~ 565 (568)
T PRK10935 513 DDGVGIGELK------------------EPEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQQE 565 (568)
T ss_pred ECCCCCCCCC------------------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 7994789878------------------8899857599999999669989999779996699998589888