HHsearch alignment for GI: 254780701 and conserved domain: PRK11073
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional.
Probab=100.00 E-value=7.3e-38 Score=343.50 Aligned_cols=209 Identities=26% Similarity=0.432 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
T Consensus 129 ~~~e~~~~iaHelrnPL~~I~g~~~ll~~~~----~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~------~~~~~ 198 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL----PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HITES 198 (348)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCC
T ss_conf 9999998401874785799999999997417----9989999999999999999999999864412688------77547
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEECCC-------
Q ss_conf 9999999999999999731122100036761010479899998877765568860-67988799999997698-------
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKF-TAIGGRVHVTVGWTSGR------- 399 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~-T~~gG~V~v~~~~~~~~------- 399 (495)
T Consensus 199 l~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~i~~d~~~l~qVl~NLl~NAik~~~~~~g~i~i~~~~~~~~~i~~~~~ 277 (348)
T PRK11073 199 IHKVAERVVQLVSLE-LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGERY 277 (348)
T ss_pred HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 999999999999985-6578099996078887264468788999999999999983669977999996433322145323
Q ss_pred --EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECH
Q ss_conf --599999878997898785442265231577767899988805899999999619859999798995298898472
Q gi|254780701|r 400 --GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPN 474 (495)
Q Consensus 400 --~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~ 474 (495)
T Consensus 278 ~~~~~i~V~D~G~GI~~e~~~~iF~pf~tt------k~~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 278 RLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf 304899999908878989999737783679------9898177899999999986998999982891-999999963